Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006498

Physical Location & Seq

Genomic Coordinates Forward (+)

14911884 .. 14912327

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG170100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAACGACTACATCAGCTTCTTGTGCAAGGAAGGGTACAACAGCACCAGCATTGGAAAGCTCATTGGTGGTAAAAAGAAGTACAACTGCTCAGACTTTAAACCCGCACCCGGCACCGATGGCCTCAACTATCCTTCAATGTCCTACCTGGTGCGAAATCCGAATTCTAGCATTTCAGCTGTTTTCCTTAGATCGGTGAAGCATGTGGGGTACGGTAAGTCGGTGTACAAGGCAAAGGTGACTTCGCCAAAGGGCCTTTCGATTAGAGTCACCCCGAGTACCTTGACATTCACTAAGAAGCATCAGAAGCGATCCTTCACGGTTGCGGTGAAGGGTGGCACGATGAAAGGAAAGACAGAGAGTCTGTCTGCTCTACTAGAGTGGGATGATGGTAGGCATACGGTTAGGAGCCCCATCGTAGTCTACAGGCATACCACATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

147

Amino Acids

16.19

Weight (kDa)

10.04

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	42 - 141	3.2e-27	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03620 AT5G03620
malus_domestica	MD12G1022400.v1.1 MD12G1022500.v1.1 MD14G1019300.v1.1 MD14G1019400.v1.1
prunus_persica	Prupe.7G114300_v2.0.a1 Prupe.7G114300_v2.0.a1
pyrus_communis	pycom14g01900
rosa_chinensis	RchiOBHm_Chr3g0472671 RchiOBHm_Chr3g0472681
rosa_laevigata	RLG00000016130 RLG00000024064
rosa_multiflora	Rmu_sc0001616.1_g000054 Rmu_sc0003510.1_g000013
rosa_roxburghii	Rroxscaffold_5G00353850 Rroxscaffold_6G00408720 Rroxscaffold_6G00408730
rosa_rugosa	Rorug03G0127100 Rorug04G0092600
rosa_samantha	Rh3AG179800 Rh3BG205700 Rh3CG202800 Rh3DG170000 Rh3DG170100
rosa_wichuraiana	Rw3G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	2 cut(s)	105, 326
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	5 cut(s)	38, 83, 212, 227, 280
AfiI	CCNNNNNNNGG	2 cut(s)	110, 193
AgsI	TTSAA	1 cut(s)	138
AhdI	GACNNNNNGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	3 cut(s)	18, 61, 179
AluI	AGCT	3 cut(s)	18, 61, 179
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	2 cut(s)	121, 253
ApoI	RAATTY	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	4 cut(s)	208, 250, 262, 340
AvaI	CYCGRG	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	413
BccI	CCATC	3 cut(s)	113, 383, 422
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	111
BfaI	CTAG	2 cut(s)	168, 377
BfmI	CTRYAG	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	111, 149
BmeRI	GACNNNNNGTC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	115, 410
BmrFI	CCNGG	2 cut(s)	111, 149
BmsI	GCATC	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 193
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	110, 193
BseMII	CTCAG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	123, 255
BshNI	GGYRCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	110, 193
BsnI	GGCC	2 cut(s)	123, 255
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	191, 311
BspACI	CCGC	2 cut(s)	105, 326
BspANI	GGCC	2 cut(s)	123, 255
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	115, 410
BspPI	GGATC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	225
BssMI	GATC	2 cut(s)	191, 311
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	215, 322, 403
BstAUI	TGTACA	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	91, 188, 294
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	2 cut(s)	194, 314
BstMBI	GATC	2 cut(s)	191, 311
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 120, 307
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	109, 147
BstSFI	CTRYAG	1 cut(s)	424
BsuRI	GGCC	2 cut(s)	123, 255
BtsCI	GGATG	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	147
Csp6I	GTAC	5 cut(s)	37, 82, 211, 226, 279
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	6 cut(s)	18, 61, 123, 179, 255, 411
CviKI_1	RGCY	6 cut(s)	18, 61, 123, 179, 255, 411
CviQI	GTAC	5 cut(s)	37, 82, 211, 226, 279
DdeI	CTNAG	3 cut(s)	91, 188, 294
DpnI	GATC	2 cut(s)	193, 313
DpnII	GATC	2 cut(s)	191, 311
DraI	TTTAAA	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	360
Eam1105I	GACNNNNNGTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	413
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	204, 399, 432, 442
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	423
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	413
FspBI	CTAG	2 cut(s)	168, 377
HaeIII	GGCC	2 cut(s)	123, 255
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	1 cut(s)	206
HinfI	GANTC	2 cut(s)	267, 361
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	4 cut(s)	208, 250, 262, 340
Hpy166II	GTNNAC	2 cut(s)	226, 424
Hpy188I	TCNGA	3 cut(s)	94, 162, 306
Hpy8I	GTNNAC	2 cut(s)	226, 424
HpyAV	CCTTC	4 cut(s)	26, 144, 325, 325
HpyCH4III	ACNGT	3 cut(s)	215, 322, 403
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 120, 307
HpyF3I	CTNAG	3 cut(s)	91, 188, 294
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	191, 311
LmnI	GCTCC	1 cut(s)	408
LpnPI	CCDG	5 cut(s)	61, 124, 134, 161, 412
LweI	GCATC	1 cut(s)	310
MabI	ACCWGGT	1 cut(s)	147
MaeI	CTAG	2 cut(s)	168, 377
MaeIII	GTNAC	2 cut(s)	238, 268
MalI	GATC	2 cut(s)	193, 313
MboI	GATC	2 cut(s)	191, 311
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	276, 370
MnlI	CCTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	111, 149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	24, 120, 307
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	191, 311
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	115, 410
NmuCI	GTSAC	2 cut(s)	238, 268
NspI	RCATGY	1 cut(s)	206
PleI	GAGTC	2 cut(s)	275, 369
PpsI	GAGTC	2 cut(s)	275, 369
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	115, 410
PspPI	GGNCC	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	5 cut(s)	38, 83, 212, 227, 280
RsaNI	GTAC	5 cut(s)	37, 82, 211, 226, 279
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	191, 311
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	276, 370
ScrFI	CCNGG	2 cut(s)	111, 149
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	6 cut(s)	20, 63, 150, 181, 240, 284
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	424
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	2 cut(s)	105, 326
SspMI	CTAG	2 cut(s)	168, 377
StyD4I	CCNGG	2 cut(s)	109, 147
TaaI	ACNGT	3 cut(s)	215, 322, 403
TaqI	TCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	163
TatI	WGTACW	2 cut(s)	81, 225
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	2 cut(s)	238, 268
Tsp45I	GTSAC	2 cut(s)	238, 268
TspDTI	ATGAA	2 cut(s)	17, 359
XapI	RAATTY	1 cut(s)	163
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	2 cut(s)	168, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.