Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003510.1

Orthogroup ID

OG0006498

Physical Location & Seq

Genomic Coordinates Forward (+)

47136 .. 47868

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003510.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgtcttgccctcatgcaactgcctcagcagcctatgtcaagtccttccacccggactggtccccggctgccatcaagtcggctctcatgacaaccgccacaccattgaaaatcaaacccctggaaggcgagttagccttcggagcaggacaaatacagccaataaaggcagtgcatcctggcctagtctacgacatttccatgaacgactacatcagcttcttgtgcaaggaaggctacaacagcaccagcattggaaagcttattggtggtaaaaagaagtacaactgctcagactttaaacccgcacccggcaccgatggcctcaactatccttcaatgtcctacctggtgcgaaatccgaattctagcatttcagctgttttccttagatcggtgaagcatgtagggtacggtaagtcggtgtacaaggcaaaggtgacttcgccaaagggcctttccattagagtcaccccgagtaccttgacattcactaagaagcatcagaagcgatccttcacggttgtggtgaagggtggcacgatgaaaggaaagatagagaggctgtctgctctactagagtgggatgatggtaggcatacggttaggagccccatcgtagtctacaggcgtaccacatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

214

Amino Acids

23.33

Weight (kDa)

9.96

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03620 AT5G03620
malus_domestica	MD12G1022400.v1.1 MD12G1022500.v1.1 MD14G1019300.v1.1 MD14G1019400.v1.1
prunus_persica	Prupe.7G114300_v2.0.a1 Prupe.7G114300_v2.0.a1
pyrus_communis	pycom14g01900
rosa_chinensis	RchiOBHm_Chr3g0472671 RchiOBHm_Chr3g0472681
rosa_laevigata	RLG00000016130 RLG00000024064
rosa_multiflora	Rmu_sc0001616.1_g000054 Rmu_sc0003510.1_g000013
rosa_roxburghii	Rroxscaffold_5G00353850 Rroxscaffold_6G00408720 Rroxscaffold_6G00408730
rosa_rugosa	Rorug03G0127100 Rorug04G0092600
rosa_samantha	Rh3AG179800 Rh3BG205700 Rh3CG202800 Rh3DG170000 Rh3DG170100
rosa_wichuraiana	Rw3G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	2 cut(s)	189, 624
AciI	CCGC	2 cut(s)	96, 306
AclWI	GGATC	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	5 cut(s)	284, 413, 428, 481, 634
AfiI	CCNNNNNNNGG	3 cut(s)	125, 311, 394
AgsI	TTSAA	2 cut(s)	109, 339
AjnI	CCWGG	3 cut(s)	120, 178, 348
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	3 cut(s)	219, 262, 380
AluI	AGCT	3 cut(s)	219, 262, 380
AlwI	GGATC	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	475
AoxI	GGCC	3 cut(s)	181, 322, 454
ApeKI	GCWGC	2 cut(s)	29, 68
ApoI	RAATTY	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	60, 454
AsuC2I	CCSGG	3 cut(s)	53, 65, 312
AsuHPI	GGTGA	4 cut(s)	409, 451, 463, 541
AvaI	CYCGRG	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	60
BaeI	ACNNNNGTAYC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	614
BbvCI	CCTCAGC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	41, 55
BccI	CCATC	4 cut(s)	80, 314, 584, 623
BciT130I	CCWGG	3 cut(s)	122, 180, 350
BcnI	CCSGG	3 cut(s)	53, 65, 312
BfaI	CTAG	3 cut(s)	185, 369, 578
BfmI	CTRYAG	1 cut(s)	625
BisI	GCNGC	2 cut(s)	30, 69
BlsI	GCNGC	2 cut(s)	31, 70
Bme1390I	CCNGG	6 cut(s)	53, 65, 122, 180, 312, 350
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	60, 454
BmiI	GGNNCC	3 cut(s)	62, 316, 611
BmrFI	CCNGG	6 cut(s)	53, 65, 122, 180, 312, 350
BmsI	GCATC	2 cut(s)	184, 511
Bpu10I	CCTNAGC	1 cut(s)	25
BpuMI	CCSGG	3 cut(s)	53, 65, 312
BsaJI	CCNNGG	2 cut(s)	63, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 311, 394
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	3 cut(s)	122, 180, 350
BseDI	CCNNGG	2 cut(s)	63, 120
BseGI	GGATG	2 cut(s)	175, 592
BseLI	CCNNNNNNNGG	3 cut(s)	125, 311, 394
BseMII	CTCAG	2 cut(s)	39, 306
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	41, 55
BshFI	GGCC	3 cut(s)	183, 324, 456
BshNI	GGYRCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	3 cut(s)	53, 65, 312
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	3 cut(s)	125, 311, 394
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	183, 324, 456
BsoBI	CYCGRG	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	392, 512
BspACI	CCGC	2 cut(s)	96, 306
BspANI	GGCC	3 cut(s)	183, 324, 456
BspCNI	CTCAG	2 cut(s)	38, 305
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	62, 316, 611
BspPI	GGATC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	63, 120
BssMI	GATC	2 cut(s)	392, 512
Bst2UI	CCWGG	3 cut(s)	122, 180, 350
Bst4CI	ACNGT	3 cut(s)	416, 523, 604
BstAUI	TGTACA	1 cut(s)	426
BstDEI	CTNAG	4 cut(s)	25, 292, 389, 495
BstF5I	GGATG	2 cut(s)	175, 592
BstKTI	GATC	2 cut(s)	395, 515
BstMBI	GATC	2 cut(s)	392, 512
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 143, 225, 234, 243, 321, 508
BstNI	CCWGG	3 cut(s)	122, 180, 350
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	6 cut(s)	51, 63, 120, 178, 310, 348
BstSFI	CTRYAG	1 cut(s)	625
BstV1I	GCAGC	2 cut(s)	41, 55
BsuRI	GGCC	3 cut(s)	183, 324, 456
BtsCI	GGATG	2 cut(s)	175, 592
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	60, 454
CsiI	ACCWGGT	1 cut(s)	348
Csp6I	GTAC	5 cut(s)	283, 412, 427, 480, 633
CviAII	CATG	4 cut(s)	14, 88, 202, 404
CviQI	GTAC	5 cut(s)	283, 412, 427, 480, 633
DdeI	CTNAG	4 cut(s)	25, 292, 389, 495
DpnI	GATC	2 cut(s)	394, 514
DpnII	GATC	2 cut(s)	392, 512
DraI	TTTAAA	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	3 cut(s)	120, 178, 348
EcoT38I	GRGCYC	1 cut(s)	614
FaeI	CATG	4 cut(s)	17, 91, 205, 407
FaiI	YATR	7 cut(s)	15, 36, 89, 203, 405, 600, 643
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	13, 87, 201, 403
FauI	CCCGC	1 cut(s)	313
FblI	GTMKAC	2 cut(s)	189, 624
Fnu4HI	GCNGC	2 cut(s)	30, 69
FokI	GGATG	2 cut(s)	162, 599
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	2 cut(s)	30, 69
FspBI	CTAG	3 cut(s)	185, 369, 578
GluI	GCNGC	2 cut(s)	30, 69
HaeIII	GGCC	3 cut(s)	183, 324, 456
HapII	CCGG	3 cut(s)	53, 65, 312
Hin1II	CATG	4 cut(s)	17, 91, 205, 407
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	468
HpaII	CCGG	3 cut(s)	53, 65, 312
HphI	GGTGA	4 cut(s)	409, 451, 463, 541
Hpy166II	GTNNAC	3 cut(s)	190, 427, 625
Hpy188I	TCNGA	4 cut(s)	143, 295, 363, 507
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	3 cut(s)	190, 427, 625
HpyAV	CCTTC	7 cut(s)	55, 119, 148, 227, 345, 526, 526
HpyCH4III	ACNGT	3 cut(s)	416, 523, 604
HpyCH4V	TGCA	3 cut(s)	17, 175, 228
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 143, 225, 234, 243, 321, 508
HpyF3I	CTNAG	4 cut(s)	25, 292, 389, 495
Hsp92II	CATG	4 cut(s)	17, 91, 205, 407
Kzo9I	GATC	2 cut(s)	392, 512
LmnI	GCTCC	2 cut(s)	143, 609
Lsp1109I	GCAGC	2 cut(s)	41, 55
LweI	GCATC	2 cut(s)	184, 511
MabI	ACCWGGT	1 cut(s)	348
MaeI	CTAG	3 cut(s)	185, 369, 578
MaeIII	GTNAC	2 cut(s)	439, 469
MalI	GATC	2 cut(s)	394, 514
MboI	GATC	2 cut(s)	392, 512
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	477
MnlI	CCTC	4 cut(s)	21, 34, 335, 555
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	2 cut(s)	200, 524
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	3 cut(s)	53, 65, 312
MspR9I	CCNGG	6 cut(s)	53, 65, 122, 180, 312, 350
MvaI	CCWGG	3 cut(s)	122, 180, 350
MwoI	GCNNNNNNNGC	7 cut(s)	29, 143, 225, 234, 243, 321, 508
NciI	CCSGG	3 cut(s)	53, 65, 312
NdeII	GATC	2 cut(s)	392, 512
NlaIII	CATG	4 cut(s)	17, 91, 205, 407
NlaIV	GGNNCC	3 cut(s)	62, 316, 611
NmuCI	GTSAC	2 cut(s)	439, 469
NspI	RCATGY	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	524
PagI	TCATGA	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	31, 70
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	3 cut(s)	120, 178, 348
PspGI	CCWGG	3 cut(s)	120, 178, 348
PspN4I	GGNNCC	3 cut(s)	62, 316, 611
PspPI	GGNCC	2 cut(s)	60, 454
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	5 cut(s)	284, 413, 428, 481, 634
RsaNI	GTAC	5 cut(s)	283, 412, 427, 480, 633
RseI	CAYNNNNRTG	2 cut(s)	200, 524
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	30, 69
Sau3AI	GATC	2 cut(s)	392, 512
Sau96I	GGNCC	2 cut(s)	60, 454
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	6 cut(s)	53, 65, 122, 180, 312, 350
SduI	GDGCHC	1 cut(s)	614
SetI	ASST	6 cut(s)	221, 264, 351, 382, 441, 485
SexAI	ACCWGGT	1 cut(s)	348
SfaNI	GCATC	2 cut(s)	184, 511
SfcI	CTRYAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	200, 524
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	2 cut(s)	96, 306
SspMI	CTAG	3 cut(s)	185, 369, 578
StyD4I	CCNGG	6 cut(s)	51, 63, 120, 178, 310, 348
TaaI	ACNGT	3 cut(s)	416, 523, 604
TasI	AATT	1 cut(s)	364
TatI	WGTACW	2 cut(s)	282, 426
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	2 cut(s)	439, 469
TseI	GCWGC	2 cut(s)	29, 68
Tsp45I	GTSAC	2 cut(s)	439, 469
TspDTI	ATGAA	2 cut(s)	218, 560
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	2 cut(s)	189, 624
XspI	CTAG	3 cut(s)	185, 369, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.