Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001616.1

Orthogroup ID

OG0006498

Physical Location & Seq

Genomic Coordinates Reverse (-)

272727 .. 273521

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001616.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgaagagagggattttggtttcagcctcggctgggaatgatggaccttatgcattttctgttcagaatgttgcgccatggataatgactgtggctgctactggccttgataagcggttaaagactctagttaagttgggtaatggcaagaaaatttctggaaattcaatcaataccttcacccccaagaaacagatgtatcccctcacaagtggagcccgtggttcaaacgttacttcagacctctacggaaatgcgagtgcttgtgacaatgggactttaaaccctcagaaggtgaagggaaggattgtgttgtgcaaagggcaaagtaatcaggatccatctattaaagacttaaatgtggcaggaactataatgacagaagatgaaatgcttgattacggttacacccctatcatcccagctacctatgtgcttgctaatgatggacttaagattgagctgtatataaagttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

159

Amino Acids

17.0

Weight (kDa)

9.32

Isoelectric Point (pI)

19.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03620 AT5G03620
malus_domestica	MD12G1022400.v1.1 MD12G1022500.v1.1 MD14G1019300.v1.1 MD14G1019400.v1.1
prunus_persica	Prupe.7G114300_v2.0.a1 Prupe.7G114300_v2.0.a1
pyrus_communis	pycom14g01900
rosa_chinensis	RchiOBHm_Chr3g0472671 RchiOBHm_Chr3g0472681
rosa_laevigata	RLG00000016130 RLG00000024064
rosa_multiflora	Rmu_sc0001616.1_g000054 Rmu_sc0003510.1_g000013
rosa_roxburghii	Rroxscaffold_5G00353850 Rroxscaffold_6G00408720 Rroxscaffold_6G00408730
rosa_rugosa	Rorug03G0127100 Rorug04G0092600
rosa_samantha	Rh3AG179800 Rh3BG205700 Rh3CG202800 Rh3DG170000 Rh3DG170100
rosa_wichuraiana	Rw3G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	478
AciI	CCGC	1 cut(s)	115
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	2 cut(s)	332, 345
AcsI	RAATTY	2 cut(s)	153, 163
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	33, 292
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	168, 228
AluBI	AGCT	2 cut(s)	425, 463
AluI	AGCT	2 cut(s)	425, 463
AlwI	GGATC	2 cut(s)	332, 345
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	153, 163
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	172, 307
AvaII	GGWCC	1 cut(s)	44
BaeI	ACNNNNGTAYC	2 cut(s)	182, 215
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	35, 349, 440
BciVI	GTATCC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	217, 339
BsaJI	CCNNGG	3 cut(s)	27, 77, 220
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 292
Bse1I	ACTGG	1 cut(s)	106
BseDI	CCNNGG	3 cut(s)	27, 77, 220
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	33, 292
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	82
BseYI	CCCAGC	2 cut(s)	32, 421
BshFI	GGCC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	33, 292
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	217, 339
BspPI	GGATC	2 cut(s)	332, 345
BspTI	CTTAAG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	27, 77, 220
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	91, 404
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	2 cut(s)	77, 220
BstF5I	GGATG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	77, 220
BtsCI	GGATG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	7 cut(s)	26, 32, 95, 105, 218, 425, 463
CviKI_1	RGCY	7 cut(s)	26, 32, 95, 105, 218, 425, 463
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraI	TTTAAA	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	81
FaiI	YATR	7 cut(s)	51, 79, 374, 432, 468, 470, 478
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	96
GsaI	CCCAGC	2 cut(s)	36, 425
HaeIII	GGCC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	81
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	2 cut(s)	172, 307
Hpy188I	TCNGA	3 cut(s)	66, 241, 291
Hpy188III	TCNNGA	2 cut(s)	159, 335
HpyAV	CCTTC	4 cut(s)	187, 286, 292, 297
HpyCH4III	ACNGT	2 cut(s)	91, 404
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	53, 318
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	81
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	18, 87, 144, 320, 351, 435
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	232, 266, 404
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	16, 395
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	153, 163
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	37, 215, 254, 297
Mph1103I	ATGCAT	1 cut(s)	55
MseI	TTAA	6 cut(s)	119, 132, 281, 348, 356, 453
MspCI	CTTAAG	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	1 cut(s)	81
NlaIV	GGNNCC	2 cut(s)	217, 339
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	478
Psp1406I	AACGTT	1 cut(s)	231
PspFI	CCCAGC	2 cut(s)	32, 421
PspN4I	GGNNCC	2 cut(s)	217, 339
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	337
SaqAI	TTAA	6 cut(s)	119, 132, 281, 348, 356, 453
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	8 cut(s)	49, 179, 234, 246, 297, 427, 431, 465
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	153, 163
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	91, 404
TaiI	ACGT	1 cut(s)	234
TasI	AATT	2 cut(s)	153, 163
Tru1I	TTAA	6 cut(s)	119, 132, 281, 348, 356, 453
Tru9I	TTAA	6 cut(s)	119, 132, 281, 348, 356, 453
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	17, 402
TspGWI	ACGGA	1 cut(s)	264
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	153, 163
XspI	CTAG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.