Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006498

Physical Location & Seq

Genomic Coordinates Reverse (-)

4088799 .. 4089600

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGAGAGGGATTTTGGTTTCAGCCTCAGCTAGGAATGATGGACCTTATGCATTTTCTGTTCAGAATGTTGCACCATGGATAATGACTGTGGCTGCTACTGGCCTTGATAGGCGGTTAAAGACTCTAGTTAAGTTGGATAATGGCAAGAAAATTTCTGGAAATTCAATCAATACCTTCACCCCCAAGAAACAGATGTATCCCCTCACAAGTGGAGCCCGTGCTTCCAACGTTGCTTCAGACCTCTATGGAAATGCGAGTGCTTGTGACACTGGGACTTTCAACCCTCAGAAGATGAAGGGAAGGATTGTGTTGTGCAAAGGGCAAAGTAATCAGGACCCATCTATTAAAGACTTAAATGGGGCAGGAACTATAATGACAGAAGATGAAATGCTTGATTACGGTTACACCCCTATCATCCCAGCTACCTATGTGCTTGTTAATGATGGACTTAAGATTGAGCGGTATATAAACACTACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

162

Amino Acids

17.46

Weight (kDa)

9.46

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03620 AT5G03620
malus_domestica	MD12G1022400.v1.1 MD12G1022500.v1.1 MD14G1019300.v1.1 MD14G1019400.v1.1
prunus_persica	Prupe.7G114300_v2.0.a1 Prupe.7G114300_v2.0.a1
pyrus_communis	pycom14g01900
rosa_chinensis	RchiOBHm_Chr3g0472671 RchiOBHm_Chr3g0472681
rosa_laevigata	RLG00000016130 RLG00000024064
rosa_multiflora	Rmu_sc0001616.1_g000054 Rmu_sc0003510.1_g000013
rosa_roxburghii	Rroxscaffold_5G00353850 Rroxscaffold_6G00408720 Rroxscaffold_6G00408730
rosa_rugosa	Rorug03G0127100 Rorug04G0092600
rosa_samantha	Rh3AG179800 Rh3BG205700 Rh3CG202800 Rh3DG170000 Rh3DG170100
rosa_wichuraiana	Rw3G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	463
AciI	CCGC	2 cut(s)	115, 463
AclI	AACGTT	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	153, 163
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	168, 283
AluBI	AGCT	2 cut(s)	32, 425
AluI	AGCT	2 cut(s)	32, 425
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	153, 163
AspS9I	GGNCC	2 cut(s)	44, 337
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	2 cut(s)	44, 337
BaeI	ACNNNNGTAYC	2 cut(s)	182, 215
BanII	GRGCYC	1 cut(s)	220
BbvCI	CCTCAGC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	35, 349, 440
BciVI	GTATCC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	33, 128
BfrI	CTTAAG	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	2 cut(s)	44, 337
BmgT120I	GGNCC	2 cut(s)	44, 337
BmiI	GGNNCC	2 cut(s)	217, 339
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	106, 277
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	42, 302
BseNI	ACTGG	2 cut(s)	106, 277
BseXI	GCAGC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	2 cut(s)	115, 463
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	41, 301
BspLI	GGNNCC	2 cut(s)	217, 339
BspTI	CTTAAG	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	106, 277
BssECI	CCNNGG	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	91, 404
BstAFI	CTTAAG	1 cut(s)	452
BstDEI	CTNAG	2 cut(s)	28, 288
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	44, 337
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	6 cut(s)	26, 32, 95, 105, 218, 425
CviKI_1	RGCY	6 cut(s)	26, 32, 95, 105, 218, 425
DdeI	CTNAG	2 cut(s)	28, 288
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	44, 337
Eco57I	CTGAAG	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	81
FaiI	YATR	7 cut(s)	51, 79, 249, 374, 432, 468, 470
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	33, 128
GluI	GCNGC	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	81
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	66, 241, 291
Hpy188III	TCNNGA	2 cut(s)	159, 335
HpyAV	CCTTC	3 cut(s)	187, 292, 297
HpyCH4III	ACNGT	2 cut(s)	91, 404
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	53, 74, 318
HpyF3I	CTNAG	2 cut(s)	28, 288
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	87, 144, 258, 320, 351, 435
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	33, 128
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	266, 404
MbiI	CCGCTC	1 cut(s)	463
MboII	GAAGA	3 cut(s)	16, 304, 395
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	153, 163
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	2 cut(s)	117, 252
MnlI	CCTC	4 cut(s)	37, 215, 254, 297
Mph1103I	ATGCAT	1 cut(s)	55
MseI	TTAA	6 cut(s)	119, 132, 348, 356, 441, 453
MspCI	CTTAAG	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	77
NlaIII	CATG	1 cut(s)	81
NlaIV	GGNNCC	2 cut(s)	217, 339
NmuCI	GTSAC	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	337
Psp1406I	AACGTT	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	217, 339
PspPI	GGNCC	2 cut(s)	44, 337
PspPPI	RGGWCCY	1 cut(s)	337
SaqAI	TTAA	6 cut(s)	119, 132, 348, 356, 441, 453
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	2 cut(s)	44, 337
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	7 cut(s)	34, 49, 179, 234, 246, 427, 431
SinI	GGWCC	2 cut(s)	44, 337
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	153, 163
SsiI	CCGC	2 cut(s)	115, 463
SspMI	CTAG	2 cut(s)	33, 128
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	91, 404
TaiI	ACGT	1 cut(s)	234
TasI	AATT	2 cut(s)	153, 163
Tru1I	TTAA	6 cut(s)	119, 132, 348, 356, 441, 453
Tru9I	TTAA	6 cut(s)	119, 132, 348, 356, 441, 453
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	17, 311, 402
TspRI	CASTG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	44, 337
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	153, 163
XspI	CTAG	2 cut(s)	33, 128
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.