Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Reverse (-)

9702383 .. 9704425

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1128100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTATTACACCGCACGTGGTAATAGACTACACCTATCTACTCTTCACAATTTGCAGACTTTAAATTATGTTTCGAGTCGCTGTTGTGAGTTGAATGATCTTGCTGGATTAACCAGTCTCAGAAAACTGGCCATACAATTGGCAAGCCCCTTGAAAAATTTGGAGGAAACCTTGAAAGGTATAAGCAACACACTCAATGGCATTCGATCTCTATATGTGCACAACTTACTTGGAACTGACAGTGGCACGGAGGTAACACAAATAGTATTCAGTTGTCGTCATGTGTACAAGCTGAAATTGAATGGTCGAACAGTAGAGTTACCTGGAGACCTTCAGCACTTTCCAAACTTCACTAAGTTATCTCTGTGCCGGTGTGATCTCAACGACAACCAAATGGCGGTACTAGCGAAGTTGCCAAATTTGAAAATCCTATGCCTAATGGAAGAAACTTTTGAGAGTTCAATTTCGGACACACTGGTTTTCTCCAACGAAGGCTTTCGTCGTCTTGAATGTCTTTCCCTTATTTCTATGTATGAGTTAAAGGACTTGAAGGTGGAAAGAGGAGCCATGCCGAGCCTCCGCCGATTGTTCATACAAGCTTGCTACAGATTGACCGAAGTTCCAAACGGGCTGAGGTATCTTACTACGCTCAGGGAGTTGAGCTTCGTAAGGATGTCTACGACATTTCGTAACAGGCTTCAGGTAGGAGGAGAGGATTTCGATAAAGTCCAACTCGTGCCTTCCGTTGTATTTGCCAACATGGTGGACAGTTCTGAAGTCGCGAAATTCCAATCACGACAGCGGAGATCGCATTCTGCCCAAGACTCTCCTGGTATTTCATTTTGCAATCCAGTTTTTTCTTTTATAATACGTATAATTTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

296

Amino Acids

33.51

Weight (kDa)

9.07

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	12 - 222	4.5e-19	Leucine-rich repeat region
LRR_At5g56370	PF24758	64 - 203	2.9e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	1 cut(s)	782
AciI	CCGC	4 cut(s)	12, 398, 580, 802
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	3 cut(s)	157, 418, 785
AcuI	CTGAAG	3 cut(s)	317, 683, 795
AcvI	CACGTG	1 cut(s)	17
AfaI	GTAC	2 cut(s)	287, 402
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	8 cut(s)	94, 154, 175, 301, 424, 462, 509, 550
AjnI	CCWGG	2 cut(s)	322, 829
AluBI	AGCT	3 cut(s)	292, 599, 663
AluI	AGCT	3 cut(s)	292, 599, 663
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	122, 321
Alw44I	GTGCAC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	129
ApaLI	GTGCAC	1 cut(s)	218
ApoI	RAATTY	3 cut(s)	157, 418, 785
Asp700I	GAANNNNTTC	1 cut(s)	495
BaeGI	GKGCMC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	131
BauI	CACGAG	1 cut(s)	734
BbrPI	CACGTG	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	632
BciT130I	CCWGG	2 cut(s)	324, 831
BcoDI	GTCTC	2 cut(s)	122, 321
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	604
Bme1390I	CCNGG	2 cut(s)	324, 831
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	2 cut(s)	324, 831
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	2 cut(s)	632, 650
BsaAI	YACGTR	2 cut(s)	17, 872
BsaI	GGTCTC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	4 cut(s)	114, 132, 480, 851
BseBI	CCWGG	2 cut(s)	324, 831
BseGI	GGATG	1 cut(s)	678
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMII	CTCAG	3 cut(s)	133, 623, 664
BseNI	ACTGG	4 cut(s)	114, 132, 480, 851
BseRI	GAGGAG	2 cut(s)	576, 723
BseSI	GKGCMC	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	2 cut(s)	122, 321
BsmI	GAATGC	2 cut(s)	201, 811
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	5 cut(s)	97, 206, 376, 806, 882
Bsp68I	TCGCGA	1 cut(s)	782
BspACI	CCGC	4 cut(s)	12, 398, 580, 802
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	3 cut(s)	132, 624, 663
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	369
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	4 cut(s)	114, 132, 480, 851
BssAI	RCCGGY	1 cut(s)	369
BssMI	GATC	5 cut(s)	97, 206, 376, 806, 882
BssSI	CACGAG	1 cut(s)	734
Bst2BI	CACGAG	1 cut(s)	734
Bst2UI	CCWGG	2 cut(s)	324, 831
Bst4CI	ACNGT	3 cut(s)	242, 313, 770
Bst6I	CTCTTC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	285
BstBAI	YACGTR	2 cut(s)	17, 872
BstC8I	GCNNGC	2 cut(s)	145, 601
BstDEI	CTNAG	4 cut(s)	119, 354, 632, 650
BstF5I	GGATG	1 cut(s)	678
BstFNI	CGCG	1 cut(s)	782
BstKTI	GATC	5 cut(s)	100, 209, 379, 809, 885
BstMAI	GTCTC	2 cut(s)	122, 321
BstMBI	GATC	5 cut(s)	97, 206, 376, 806, 882
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 808
BstNI	CCWGG	2 cut(s)	324, 831
BstSCI	CCNGG	2 cut(s)	322, 829
BstSFI	CTRYAG	1 cut(s)	604
BstSLI	GKGCMC	1 cut(s)	222
BstSNI	TACGTA	1 cut(s)	872
BstUI	CGCG	1 cut(s)	782
BstXI	CCANNNNNNTGG	2 cut(s)	139, 763
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	247, 473
BtuMI	TCGCGA	1 cut(s)	782
Cac8I	GCNNGC	2 cut(s)	145, 601
Cfr10I	RCCGGY	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	286, 401
CviAII	CATG	3 cut(s)	281, 568, 760
CviQI	GTAC	2 cut(s)	286, 401
DdeI	CTNAG	4 cut(s)	119, 354, 632, 650
DpnI	GATC	5 cut(s)	99, 208, 378, 808, 884
DpnII	GATC	5 cut(s)	97, 206, 376, 806, 882
DraI	TTTAAA	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	569
Eco105I	TACGTA	1 cut(s)	872
Eco31I	GGTCTC	1 cut(s)	321
Eco57I	CTGAAG	3 cut(s)	317, 683, 795
Eco72I	CACGTG	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	322, 829
FaeI	CATG	3 cut(s)	284, 571, 763
FatI	CATG	3 cut(s)	280, 567, 759
FblI	GTMKAC	1 cut(s)	677
FokI	GGATG	1 cut(s)	685
FspBI	CTAG	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	3 cut(s)	284, 571, 763
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	2 cut(s)	76, 824
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	4 cut(s)	220, 286, 678, 766
Hpy188I	TCNGA	3 cut(s)	122, 469, 775
Hpy188III	TCNNGA	3 cut(s)	506, 781, 795
Hpy8I	GTNNAC	4 cut(s)	220, 286, 678, 766
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	4 cut(s)	341, 485, 544, 750
HpyCH4III	ACNGT	3 cut(s)	242, 313, 770
HpyCH4IV	ACGT	2 cut(s)	16, 871
HpyCH4V	TGCA	3 cut(s)	55, 220, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 808
HpyF3I	CTNAG	4 cut(s)	119, 354, 632, 650
HpySE526I	ACGT	2 cut(s)	16, 871
Hsp92II	CATG	3 cut(s)	284, 571, 763
Kzo9I	GATC	5 cut(s)	97, 206, 376, 806, 882
LmnI	GCTCC	1 cut(s)	563
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	2 cut(s)	16, 871
MaeIII	GTNAC	3 cut(s)	253, 318, 689
MalI	GATC	5 cut(s)	99, 208, 378, 808, 884
MboI	GATC	5 cut(s)	97, 206, 376, 806, 882
MboII	GAAGA	2 cut(s)	35, 455
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	9 cut(s)	49, 64, 137, 157, 296, 418, 462, 785, 876
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	85, 818
MmeI	TCCRAC	2 cut(s)	510, 754
MnlI	CCTC	7 cut(s)	157, 244, 554, 587, 627, 701, 706
Mox20I	TGGCCA	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	3 cut(s)	62, 110, 539
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	802
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	324, 831
MunI	CAATTG	1 cut(s)	137
Mva1269I	GAATGC	2 cut(s)	201, 811
MvaI	CCWGG	2 cut(s)	324, 831
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	2 cut(s)	404, 808
NdeII	GATC	5 cut(s)	97, 206, 376, 806, 882
NlaIII	CATG	3 cut(s)	284, 571, 763
NlaIV	GGNNCC	1 cut(s)	565
NmeAIII	GCCGAG	1 cut(s)	597
NruI	TCGCGA	1 cut(s)	782
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	2 cut(s)	201, 811
PdmI	GAANNNNTTC	1 cut(s)	495
PleI	GAGTC	2 cut(s)	84, 818
PmaCI	CACGTG	1 cut(s)	17
PmlI	CACGTG	1 cut(s)	17
PpsI	GAGTC	2 cut(s)	84, 818
Ppu21I	YACGTR	2 cut(s)	17, 872
PsiI	TTATAA	1 cut(s)	866
Psp6I	CCWGG	2 cut(s)	322, 829
PspCI	CACGTG	1 cut(s)	17
PspGI	CCWGG	2 cut(s)	322, 829
PspN4I	GGNNCC	1 cut(s)	565
RruI	TCGCGA	1 cut(s)	782
RsaI	GTAC	2 cut(s)	287, 402
RsaNI	GTAC	2 cut(s)	286, 401
SaqAI	TTAA	3 cut(s)	62, 110, 539
Sau3AI	GATC	5 cut(s)	97, 206, 376, 806, 882
SchI	GAGTC	2 cut(s)	85, 818
ScrFI	CCNGG	2 cut(s)	324, 831
SduI	GDGCHC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	604
SnaBI	TACGTA	1 cut(s)	872
Sse9I	AATT	9 cut(s)	49, 64, 137, 157, 296, 418, 462, 785, 876
SsiI	CCGC	4 cut(s)	12, 398, 580, 802
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	2 cut(s)	322, 829
TaaI	ACNGT	3 cut(s)	242, 313, 770
TaiI	ACGT	2 cut(s)	19, 874
TaqI	TCGA	4 cut(s)	74, 205, 307, 720
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	9 cut(s)	49, 64, 137, 157, 296, 418, 462, 785, 876
TatI	WGTACW	1 cut(s)	285
Tru1I	TTAA	3 cut(s)	62, 110, 539
Tru9I	TTAA	3 cut(s)	62, 110, 539
TscAI	CASTG	2 cut(s)	247, 480
TspDTI	ATGAA	2 cut(s)	580, 828
TspGWI	ACGGA	2 cut(s)	263, 733
TspRI	CASTG	2 cut(s)	247, 480
VneI	GTGCAC	1 cut(s)	218
XapI	RAATTY	3 cut(s)	157, 418, 785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XmiI	GTMKAC	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.