Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000245.1

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Forward (+)

112529 .. 112951

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000245.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggaagaactgagacatctctatatgccctacttcccacggtggggcagtaggatacgactgtctactctttccaatttgcagacagtaagtgatttttcaagcttgtcttgggatttgagtattcttccgaagttggtcaatcttcgaaaactaagcatacaactgcataaactgttgaaaaatctgaaagaaatcttgaggcgttcaagcagtacgctggatggtaggactctgagagctggcaaccaagttccacattgtgctggaggtgcttgggaggttagagaagtagtgttaagctgtcgttatgtgtacaagctggaggcatctgggctaatggaagagttaccggcagaactccagtactatccgaaactcaccaagttatcgttgagttattgtcatgagctcaaggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

140

Amino Acids

16.24

Weight (kDa)

9.35

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	3 cut(s)	217, 317, 368
AfiI	CCNNNNNNNGG	2 cut(s)	43, 44
AgsI	TTSAA	3 cut(s)	102, 181, 210
AluBI	AGCT	5 cut(s)	105, 242, 303, 322, 412
AluI	AGCT	5 cut(s)	105, 242, 303, 322, 412
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	373
AsuII	TTCGAA	1 cut(s)	148
BaeI	ACNNNNGTAYC	2 cut(s)	47, 80
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	414
BccI	CCATC	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	7
BfuI	GTATCC	1 cut(s)	48
BmcAI	AGTACT	1 cut(s)	368
BmsI	GCATC	1 cut(s)	338
BpmI	CTGGAG	3 cut(s)	288, 344, 347
Bpu14I	TTCGAA	1 cut(s)	148
BpuEI	CTTGAG	2 cut(s)	220, 398
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 44
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	43, 44
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	43, 44
BsmAI	GTCTC	1 cut(s)	7
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp1407I	TGTACA	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	406
BspT104I	TTCGAA	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	38
Bst4CI	ACNGT	4 cut(s)	42, 63, 88, 177
Bst6I	CTCTTC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	11, 155, 236
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	216, 316, 367
CviAII	CATG	1 cut(s)	407
CviJI	RGCY	6 cut(s)	105, 242, 303, 322, 337, 412
CviKI_1	RGCY	6 cut(s)	105, 242, 303, 322, 337, 412
CviQI	GTAC	3 cut(s)	216, 316, 367
DdeI	CTNAG	3 cut(s)	11, 155, 236
DraIII	CACNNNGTG	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	1 cut(s)	410
FaiI	YATR	6 cut(s)	24, 26, 161, 171, 312, 408
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FatI	CATG	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	65
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	414
GsuI	CTGGAG	3 cut(s)	288, 344, 347
HapII	CCGG	1 cut(s)	353
Hin1II	CATG	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	66, 316
Hpy188I	TCNGA	4 cut(s)	132, 189, 237, 375
Hpy188III	TCNNGA	2 cut(s)	199, 407
Hpy8I	GTNNAC	2 cut(s)	66, 316
HpyCH4III	ACNGT	4 cut(s)	42, 63, 88, 177
HpyCH4V	TGCA	2 cut(s)	82, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	11, 155, 236
Hsp92II	CATG	1 cut(s)	410
LpnPI	CCDG	7 cut(s)	206, 228, 252, 308, 318, 366, 377
LweI	GCATC	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	348
MboII	GAAGA	4 cut(s)	17, 119, 137, 356
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	4 cut(s)	195, 263, 274, 319
MseI	TTAA	2 cut(s)	299, 421
MspI	CCGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	148
PagI	TCATGA	1 cut(s)	406
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	414
RsaI	GTAC	3 cut(s)	217, 317, 368
RsaNI	GTAC	3 cut(s)	216, 316, 367
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	299, 421
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	7 cut(s)	107, 244, 274, 285, 305, 324, 414
SfaNI	GCATC	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	199, 413
SmoI	CTYRAG	2 cut(s)	199, 413
Sse9I	AATT	1 cut(s)	76
SstI	GAGCTC	1 cut(s)	414
TaaI	ACNGT	4 cut(s)	42, 63, 88, 177
TaqI	TCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	76
TatI	WGTACW	2 cut(s)	315, 366
Tru1I	TTAA	2 cut(s)	299, 421
Tru9I	TTAA	2 cut(s)	299, 421
XmiI	GTMKAC	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.