Rh5DG042900

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013728
Physical Location & Seq
Forward (+)
3331097 .. 3331708
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG042900.1

Sequence Viewer

Length: 246 bp
ATGGAAGAATCCATAACCCGAATAGTCACAGAGCTCGAAGACCTCCGCCACCTCGAAAACCCCACCAATACTCAATCCCAACCCATCTCCGATTCCACTCTCTTCGACCTCCAAACCCTCTTCGACGCCAATGACCCCGACCCCATGGACTGCTTCTCCGACGAGCTCGCCGCCAAGTCCCTCTCCCTCTCCAATCTGGTCCGCCCCATCGGCGCCGCCATGGATTCCGGCCCGGCCCTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

81

Amino Acids

8.91

Weight (kDa)

4.05

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 4 cut(s) 46, 171, 202, 216
AcyI GRCGYC 2 cut(s) 126, 213
AluBI AGCT 2 cut(s) 34, 166
AluI AGCT 2 cut(s) 34, 166
Alw21I GWGCWC 2 cut(s) 36, 168
AoxI GGCC 2 cut(s) 229, 234
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 3 cut(s) 199, 230, 235
AsuC2I CCSGG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 2 cut(s) 36, 168
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 36, 168
BccI CCATC 2 cut(s) 92, 215
BcnI CCSGG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 2 cut(s) 171, 216
BlsI GCNGC 2 cut(s) 172, 217
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 199, 230, 235
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 2 cut(s) 126, 213
BsaJI CCNNGG 2 cut(s) 144, 219
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
BseDI CCNNGG 2 cut(s) 144, 219
BshFI GGCC 2 cut(s) 231, 236
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 36, 168
BsiSI CCGG 2 cut(s) 228, 233
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 231, 236
Bsp1286I GDGCHC 2 cut(s) 36, 168
Bsp19I CCATGG 2 cut(s) 144, 219
BspACI CCGC 4 cut(s) 46, 171, 202, 216
BspANI GGCC 2 cut(s) 231, 236
BspLI GGNNCC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 144, 219
BssNI GRCGYC 2 cut(s) 126, 213
BssT1I CCWWGG 2 cut(s) 144, 219
Bst6I CTCTTC 2 cut(s) 107, 125
BstACI GRCGYC 2 cut(s) 126, 213
BstC8I GCNNGC 1 cut(s) 168
BstDSI CCRYGG 2 cut(s) 144, 219
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 2 cut(s) 231, 236
BtgI CCRYGG 2 cut(s) 144, 219
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 3 cut(s) 199, 230, 235
CseI GACGC 1 cut(s) 134
CviAII CATG 2 cut(s) 145, 220
CviJI RGCY 4 cut(s) 34, 166, 231, 236
CviKI_1 RGCY 4 cut(s) 34, 166, 231, 236
DinI GGCGCC 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 107, 125
EarI CTCTTC 2 cut(s) 107, 125
EciI GGCGGA 2 cut(s) 35, 191
Ecl136II GAGCTC 2 cut(s) 34, 166
Eco130I CCWWGG 2 cut(s) 144, 219
Eco24I GRGCYC 2 cut(s) 36, 168
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 2 cut(s) 34, 166
EcoICRI GAGCTC 2 cut(s) 34, 166
EcoT14I CCWWGG 2 cut(s) 144, 219
EcoT38I GRGCYC 2 cut(s) 36, 168
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
ErhI CCWWGG 2 cut(s) 144, 219
FaeI CATG 2 cut(s) 148, 223
FaiI YATR 3 cut(s) 14, 146, 221
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 144, 219
Fnu4HI GCNGC 2 cut(s) 171, 216
FriOI GRGCYC 2 cut(s) 36, 168
Fsp4HI GCNGC 2 cut(s) 171, 216
GlaI GCGC 1 cut(s) 214
GluI GCNGC 2 cut(s) 171, 216
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 231, 236
HapII CCGG 2 cut(s) 228, 233
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 2 cut(s) 126, 213
Hin1II CATG 2 cut(s) 148, 223
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 3 cut(s) 8, 92, 224
HpaII CCGG 2 cut(s) 228, 233
Hpy188I TCNGA 2 cut(s) 91, 160
Hpy99I CGWCG 2 cut(s) 128, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
Hsp92I GRCGYC 2 cut(s) 126, 213
Hsp92II CATG 2 cut(s) 148, 223
HspAI GCGC 1 cut(s) 213
KasI GGCGCC 1 cut(s) 212
LpnPI CCDG 2 cut(s) 182, 241
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 4 cut(s) 17, 50, 94, 112
MhlI GDGCHC 2 cut(s) 36, 168
Mly113I GGCGCC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 6 cut(s) 53, 62, 119, 128, 191, 197
MspI CCGG 2 cut(s) 228, 233
MspR9I CCNGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 210
NarI GGCGCC 1 cut(s) 213
NciI CCSGG 1 cut(s) 233
NcoI CCATGG 2 cut(s) 144, 219
NlaIII CATG 2 cut(s) 148, 223
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 8, 92, 224
PkrI GCNGC 2 cut(s) 172, 217
PluTI GGCGCC 1 cut(s) 216
Psp124BI GAGCTC 2 cut(s) 36, 168
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 3 cut(s) 199, 230, 235
SacI GAGCTC 2 cut(s) 36, 168
SatI GCNGC 2 cut(s) 171, 216
Sau96I GGNCC 3 cut(s) 199, 230, 235
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 36, 168
SetI ASST 5 cut(s) 36, 45, 54, 111, 168
SfoI GGCGCC 1 cut(s) 214
SinI GGWCC 1 cut(s) 199
SsiI CCGC 4 cut(s) 46, 171, 202, 216
SspDI GGCGCC 1 cut(s) 212
SstI GAGCTC 2 cut(s) 36, 168
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 2 cut(s) 144, 219
TaqI TCGA 4 cut(s) 36, 54, 105, 123
TauI GCSGC 2 cut(s) 173, 218
TfiI GAWTC 3 cut(s) 8, 92, 224
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.