Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000446.1

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Forward (+)

105567 .. 106079

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000446.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggaagaaaccataacccgaatagtcacagagctcgaagacctccgctacctcgaaaaccccactaataccctgtgccaacccatcttcgattccactctctccgacctccaaactctcttcgacgccaatgactccgatcccatggactgcttccccgaagagatcgccgccaagtccctctccctctccaatctggtccgccccattgacgccgccatggattccggcccggcccggccctcttctgatttcttctccttctcaaaattccgatgcggtactctccttttctgtaagagtcaatactttcatcgtcctcctctaatcctgatgaagacaagaacaacatgttgcttatccgaattgggttttgaggattgtgagctaatgtgtattgggtgctttgaatttgaaaccccgattgaaaaaggatcaacgtgtagccagtttagagaagaattaagagttgggtatcagttaaaattggatttgaagctgaatccggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cnd1

Protein Analysis

170

Amino Acids

19.33

Weight (kDa)

4.52

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	46, 171, 202, 216, 279
AclWI	GGATC	2 cut(s)	134, 442
AcsI	RAATTY	2 cut(s)	269, 410
AcyI	GRCGYC	2 cut(s)	126, 213
AfaI	GTAC	1 cut(s)	283
AflIII	ACRYGT	2 cut(s)	350, 440
AgsI	TTSAA	4 cut(s)	410, 416, 428, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	3 cut(s)	34, 388, 499
AluI	AGCT	3 cut(s)	34, 388, 499
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	2 cut(s)	134, 442
AoxI	GGCC	3 cut(s)	229, 234, 239
ApoI	RAATTY	2 cut(s)	269, 410
AspS9I	GGNCC	4 cut(s)	199, 230, 235, 240
AsuC2I	CCSGG	2 cut(s)	233, 238
AvaII	GGWCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	45, 344
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	1 cut(s)	92
BcnI	CCSGG	2 cut(s)	233, 238
BisI	GCNGC	2 cut(s)	171, 216
BlsI	GCNGC	2 cut(s)	172, 217
Bme1390I	CCNGG	2 cut(s)	233, 238
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	4 cut(s)	199, 230, 235, 240
BmrFI	CCNGG	2 cut(s)	233, 238
BmsI	GCATC	1 cut(s)	266
BpiI	GAAGAC	2 cut(s)	45, 344
BpuMI	CCSGG	2 cut(s)	233, 238
BsaHI	GRCGYC	2 cut(s)	126, 213
BsaJI	CCNNGG	2 cut(s)	144, 219
BsaWI	WCCGGW	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	144, 219
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	231, 236, 241
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	4 cut(s)	228, 233, 238, 506
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	231, 236, 241
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	139, 165, 434
Bsp19I	CCATGG	2 cut(s)	144, 219
BspACI	CCGC	5 cut(s)	46, 171, 202, 216, 279
BspANI	GGCC	3 cut(s)	231, 236, 241
BspPI	GGATC	2 cut(s)	134, 442
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	144, 219
BssMI	GATC	3 cut(s)	139, 165, 434
BssNI	GRCGYC	2 cut(s)	126, 213
BssT1I	CCWWGG	2 cut(s)	144, 219
Bst6I	CTCTTC	3 cut(s)	125, 156, 250
BstACI	GRCGYC	2 cut(s)	126, 213
BstDSI	CCRYGG	2 cut(s)	144, 219
BstKTI	GATC	3 cut(s)	142, 168, 437
BstMBI	GATC	3 cut(s)	139, 165, 434
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	231, 236
BstV2I	GAAGAC	2 cut(s)	45, 344
BsuRI	GGCC	3 cut(s)	231, 236, 241
BtgI	CCRYGG	2 cut(s)	144, 219
Cfr13I	GGNCC	4 cut(s)	199, 230, 235, 240
CseI	GACGC	2 cut(s)	134, 221
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	3 cut(s)	145, 220, 351
CviJI	RGCY	7 cut(s)	34, 231, 236, 241, 388, 447, 499
CviKI_1	RGCY	7 cut(s)	34, 231, 236, 241, 388, 447, 499
CviQI	GTAC	1 cut(s)	282
DpnI	GATC	3 cut(s)	141, 167, 436
DpnII	GATC	3 cut(s)	139, 165, 434
Eam1104I	CTCTTC	3 cut(s)	125, 156, 250
EarI	CTCTTC	3 cut(s)	125, 156, 250
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	144, 219
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	144, 219
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	144, 219
FaeI	CATG	3 cut(s)	148, 223, 354
FaiI	YATR	5 cut(s)	14, 146, 221, 352, 511
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	3 cut(s)	144, 219, 350
Fnu4HI	GCNGC	2 cut(s)	171, 216
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	171, 216
GluI	GCNGC	2 cut(s)	171, 216
HaeIII	GGCC	3 cut(s)	231, 236, 241
HapII	CCGG	4 cut(s)	228, 233, 238, 506
HgaI	GACGC	2 cut(s)	134, 221
Hin1I	GRCGYC	2 cut(s)	126, 213
Hin1II	CATG	3 cut(s)	148, 223, 354
HinfI	GANTC	5 cut(s)	92, 134, 224, 301, 502
HpaII	CCGG	4 cut(s)	228, 233, 238, 506
Hpy188I	TCNGA	5 cut(s)	106, 139, 250, 275, 364
Hpy188III	TCNNGA	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	2 cut(s)	126, 213
Hsp92II	CATG	3 cut(s)	148, 223, 354
Kzo9I	GATC	3 cut(s)	139, 165, 434
LpnPI	CCDG	7 cut(s)	86, 182, 241, 246, 251, 344, 461
LweI	GCATC	1 cut(s)	266
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	141, 167, 436
MboI	GATC	3 cut(s)	139, 165, 434
MboII	GAAGA	9 cut(s)	17, 50, 79, 112, 173, 237, 247, 349, 470
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	5 cut(s)	269, 365, 410, 461, 485
MlyI	GAGTC	2 cut(s)	128, 310
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	9 cut(s)	53, 62, 119, 191, 197, 253, 330, 333, 370
MseI	TTAA	2 cut(s)	464, 482
MspI	CCGG	4 cut(s)	228, 233, 238, 506
MspR9I	CCNGG	2 cut(s)	233, 238
NciI	CCSGG	2 cut(s)	233, 238
NcoI	CCATGG	2 cut(s)	144, 219
NdeII	GATC	3 cut(s)	139, 165, 434
NlaIII	CATG	3 cut(s)	148, 223, 354
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	354
PciI	ACATGT	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	92, 224, 502
PkrI	GCNGC	2 cut(s)	172, 217
PleI	GAGTC	2 cut(s)	128, 309
PpsI	GAGTC	2 cut(s)	128, 309
PscI	ACATGT	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	36
PspPI	GGNCC	4 cut(s)	199, 230, 235, 240
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	464, 482
SatI	GCNGC	2 cut(s)	171, 216
Sau3AI	GATC	3 cut(s)	139, 165, 434
Sau96I	GGNCC	4 cut(s)	199, 230, 235, 240
SchI	GAGTC	2 cut(s)	128, 310
ScrFI	CCNGG	2 cut(s)	233, 238
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	7 cut(s)	36, 45, 54, 111, 390, 443, 501
SfaNI	GCATC	1 cut(s)	266
SinI	GGWCC	1 cut(s)	199
Sse9I	AATT	5 cut(s)	269, 365, 410, 461, 485
SsiI	CCGC	5 cut(s)	46, 171, 202, 216, 279
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	231, 236
StyI	CCWWGG	2 cut(s)	144, 219
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	4 cut(s)	36, 54, 90, 123
TasI	AATT	5 cut(s)	269, 365, 410, 461, 485
TauI	GCSGC	2 cut(s)	173, 218
TfiI	GAWTC	3 cut(s)	92, 224, 502
Tru1I	TTAA	2 cut(s)	464, 482
Tru9I	TTAA	2 cut(s)	464, 482
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	302, 350
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	2 cut(s)	269, 410
XceI	RCATGY	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.