Rroxscaffold_3G00250210

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013728
Physical Location & Seq
Reverse (-)
44035047 .. 44037661
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250210.1

Sequence Viewer

Length: 378 bp
ATGGAAGAAACCATAACCCTAATAGTCACGAGCTCGAAGACCTCTCGCTACCTCGAAAACCCCACCAATACCCAATCCCAACCCATCTTCGATTCCACTCTCTCCGACCTCCAAACCCTCTCCGACGCCAATGACTCCGACCCCATGGATCGCTTCCCCGACGAGATCGCCGCCAAGTCCCTCTCCCTCTCCAATCGGTCCGCCCTATCGGCGCCGCCATGGATTCCGGCCCGCCCTCTTCGATTTCTTCTCCTTCTCAAAATTCCGACGTGGTACTCTCCTTTTCTCGATTTGAAGTTGGGGGAACCAGAAACATCCGTGGTGCATGAAGGTGGATTGAGACGCGGCGGTGGGAATCGGACGAGCAAGATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

125

Amino Acids

13.86

Weight (kDa)

5.34

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 1 cut(s) 345
AciI CCGC 6 cut(s) 171, 201, 215, 232, 345, 348
AclWI GGATC 1 cut(s) 156
AcsI RAATTY 1 cut(s) 261
AcyI GRCGYC 2 cut(s) 126, 212
AfaI GTAC 1 cut(s) 275
AgsI TTSAA 1 cut(s) 295
AjiI CACGTC 1 cut(s) 270
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 1 cut(s) 156
AoxI GGCC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 261
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 198, 229
AvaII GGWCC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 35
BauI CACGAG 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 35
BccI CCATC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 215
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 3 cut(s) 171, 215, 346
BlsI GCNGC 3 cut(s) 172, 216, 347
Bme18I GGWCC 1 cut(s) 198
BmgBI CACGTC 1 cut(s) 270
BmgT120I GGNCC 2 cut(s) 198, 229
BmiI GGNNCC 2 cut(s) 213, 306
BpiI GAAGAC 1 cut(s) 44
BsaHI GRCGYC 2 cut(s) 126, 212
BsaJI CCNNGG 3 cut(s) 144, 218, 318
BseDI CCNNGG 3 cut(s) 144, 218, 318
BseGI GGATG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 334
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 148, 165
Bsp19I CCATGG 2 cut(s) 144, 218
BspACI CCGC 6 cut(s) 171, 201, 215, 232, 345, 348
BspANI GGCC 1 cut(s) 230
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 213, 306
BspPI GGATC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 144, 218, 318
BssMI GATC 2 cut(s) 148, 165
BssNI GRCGYC 2 cut(s) 126, 212
BssSI CACGAG 1 cut(s) 28
BssT1I CCWWGG 2 cut(s) 144, 218
Bst2BI CACGAG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 126, 212
BstC8I GCNNGC 1 cut(s) 232
BstDSI CCRYGG 3 cut(s) 144, 218, 318
BstF5I GGATG 1 cut(s) 314
BstFNI CGCG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 151, 168
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 2 cut(s) 148, 165
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstUI CGCG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 230
BtgI CCRYGG 3 cut(s) 144, 218, 318
BtrI CACGTC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 198, 229
CpoI CGGWCCG 1 cut(s) 198
CseI GACGC 2 cut(s) 134, 351
Csp6I GTAC 1 cut(s) 274
CspI CGGWCCG 1 cut(s) 198
CviAII CATG 3 cut(s) 145, 219, 326
CviJI RGCY 2 cut(s) 33, 230
CviKI_1 RGCY 2 cut(s) 33, 230
CviQI GTAC 1 cut(s) 274
DinI GGCGCC 1 cut(s) 213
DpnI GATC 2 cut(s) 150, 167
DpnII GATC 2 cut(s) 148, 165
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 144, 218
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 144, 218
EcoT38I GRGCYC 1 cut(s) 35
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 144, 218
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 3 cut(s) 148, 222, 329
FaiI YATR 4 cut(s) 14, 146, 220, 327
FaqI GGGAC 1 cut(s) 163
FatI CATG 3 cut(s) 144, 218, 325
FauI CCCGC 1 cut(s) 239
Fnu4HI GCNGC 3 cut(s) 171, 215, 346
FokI GGATG 1 cut(s) 301
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 3 cut(s) 171, 215, 346
GlaI GCGC 1 cut(s) 213
GluI GCNGC 3 cut(s) 171, 215, 346
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 227
HgaI GACGC 2 cut(s) 134, 351
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 2 cut(s) 126, 212
Hin1II CATG 3 cut(s) 148, 222, 329
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 4 cut(s) 92, 134, 223, 355
HpaII CCGG 1 cut(s) 227
Hpy188I TCNGA 5 cut(s) 106, 124, 139, 267, 360
Hpy188III TCNNGA 2 cut(s) 28, 287
Hpy99I CGWCG 3 cut(s) 128, 164, 271
HpyAV CCTTC 2 cut(s) 263, 323
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 269
Hsp92I GRCGYC 2 cut(s) 126, 212
Hsp92II CATG 3 cut(s) 148, 222, 329
HspAI GCGC 1 cut(s) 212
KasI GGCGCC 1 cut(s) 211
Kzo9I GATC 2 cut(s) 148, 165
LpnPI CCDG 2 cut(s) 240, 321
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 25
MalI GATC 2 cut(s) 150, 167
MboI GATC 2 cut(s) 148, 165
MboII GAAGA 5 cut(s) 17, 49, 79, 230, 239
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 261
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 4 cut(s) 129, 147, 162, 290
MnlI CCTC 7 cut(s) 52, 62, 119, 128, 191, 197, 246
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 209
NarI GGCGCC 1 cut(s) 212
NcoI CCATGG 2 cut(s) 144, 218
NdeII GATC 2 cut(s) 148, 165
NlaIII CATG 3 cut(s) 148, 222, 329
NlaIV GGNNCC 2 cut(s) 213, 306
NmuCI GTSAC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 92, 223, 355
PkrI GCNGC 3 cut(s) 172, 216, 347
PleI GAGTC 1 cut(s) 128
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 213, 306
PspPI GGNCC 2 cut(s) 198, 229
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 330
Rsr2I CGGWCCG 1 cut(s) 198
RsrII CGGWCCG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 35
SatI GCNGC 3 cut(s) 171, 215, 346
Sau3AI GATC 2 cut(s) 148, 165
Sau96I GGNCC 2 cut(s) 198, 229
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 35
SetI ASST 6 cut(s) 35, 44, 54, 111, 272, 334
SfoI GGCGCC 1 cut(s) 213
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 330
Sse9I AATT 1 cut(s) 261
SsiI CCGC 6 cut(s) 171, 201, 215, 232, 345, 348
SspDI GGCGCC 1 cut(s) 211
SstI GAGCTC 1 cut(s) 35
StyI CCWWGG 2 cut(s) 144, 218
TaiI ACGT 1 cut(s) 272
TaqI TCGA 5 cut(s) 35, 54, 90, 241, 288
TaqII GACCGA 1 cut(s) 186
TasI AATT 1 cut(s) 261
TauI GCSGC 3 cut(s) 173, 217, 348
TfiI GAWTC 3 cut(s) 92, 223, 355
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.