Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Forward (+)

57430275 .. 57432151

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019851

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTTTGAGAGCTTTGTGTTGGTCGTTCCTTGTCTTCTTTTTTGTTGTCTATGTCAATGCTTTTGTTGTCTATGTCAATGCTCATGATCATCATAAGCCAAAGCCTCATGATCAGCATAAGCCAAAGCCTCATGACCAGCATAAACCAAAGCCTCATGACCAGCAGAAGCCAAGGCGTGATGATCAGCAGAAGCTAAGGCCTGATGATCAGCAAAAGCCAAAGTTGCTGTCAACTGAATGGAAATATGCTCATGCCACATTCTATGAAGGAGGTTCCGGAACATTTGGTGGAGCTTATGGATACCATGATGTAGTTCAAGAAGGCTATGACCTGGAGACAGTAGCATTGAGCAATGCATTGTTCAACAAGGGGGAGATGTGTGGTGCATGCTTCGAAATCAAATGCGAAGACTCGCCTAAATGGTGCAAGCCTGGCCAGCCAAGTCTCATTGTTACAGCAACCAACCAGTGCCCTCCAAATTACAACCAACTGAGTGATAACGGAGGATGGTGCAACGAACCCCGTGAACATTTCGACATAGCAACTAGCAAGGCCTGTGTTCGAGACTATTGCCGCGTACAAGGCAGGTACCGCAGGTACTTCAATATATATACCGATATGTTTGTCTTATTGCCTTGCTTTATCAACACCAATACCCAATCCCAACCGATCTCCGATTCCATTCTCTCCCACCTCCAAACCCTCTTCGACGCCAATAACCCTAACCCCATGGACCGCTTCTTCGATGAGCTCGCCGCCAAGTCCCTCCCCCTCTCCAAACTGGTCCTCCCCATCGCCGCCGCCATGGATTCGCCCGGCCCATTTCATCCTCTCCACCTCCAAGCTCTACCTCTCTCCCCTAATTCCCTAGTCTGCACTCTCTTCACTCCCATGACGTTTTTCTCTCTCATCCAGTCGATTTGCATATCGCTGAAGCACCTCCGTGCCGAATTGGTGCTTGAAAAATTGGAACTTGTGATCGATTTGGTTCATTTGGATCAATTTTCAGATAGATTGAAGCCTGAGGTTTTGCTTAAGGTGTCCAAGCTTGAGGTTGGAGACCATGCCAACATTGCAGCTGAGGTGTTCAAGTCATTGGCACCAATGATTCTTCAGCCTCAAGATGGTCCACCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

381

Amino Acids

43.06

Weight (kDa)

6.49

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	98 - 183	6.5e-06	EXPB1-like domain 1
DPBB_1	PF03330	114 - 183	2.2e-11	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	579, 588
Acc65I	GGTACC	1 cut(s)	591
AccB1I	GGYRCC	2 cut(s)	591, 1102
AccII	CGCG	1 cut(s)	579
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	6 cut(s)	577, 595, 739, 759, 801, 804
AclWI	GGATC	1 cut(s)	1008
AcoI	YGGCCR	1 cut(s)	436
AcuI	CTGAAG	2 cut(s)	956, 1100
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	3 cut(s)	582, 593, 602
AfiI	CCNNNNNNNGG	1 cut(s)	1127
AflII	CTTAAG	1 cut(s)	1037
AgsI	TTSAA	6 cut(s)	320, 367, 607, 965, 1021, 1093
AjnI	CCWGG	2 cut(s)	333, 433
AleI	CACNNNNGTG	1 cut(s)	945
AluBI	AGCT	7 cut(s)	14, 196, 296, 754, 848, 1051, 1082
AluI	AGCT	7 cut(s)	14, 196, 296, 754, 848, 1051, 1082
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	4 cut(s)	332, 452, 561, 1056
AlwI	GGATC	1 cut(s)	1008
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	4 cut(s)	200, 436, 555, 820
ApeKI	GCWGC	1 cut(s)	1079
ArsI	GACNNNNNNTTYG	4 cut(s)	215, 247, 728, 760
Asp718I	GGTACC	1 cut(s)	591
AspS9I	GGNCC	4 cut(s)	736, 787, 821, 1130
AsuC2I	CCSGG	1 cut(s)	819
AsuII	TTCGAA	1 cut(s)	396
AvaII	GGWCC	3 cut(s)	736, 787, 1130
AxyI	CCTNAGG	1 cut(s)	1026
BaeGI	GKGCMC	1 cut(s)	476
BalI	TGGCCA	1 cut(s)	438
BanI	GGYRCC	2 cut(s)	591, 1102
BanII	GRGCYC	1 cut(s)	756
BbsI	GAAGAC	2 cut(s)	28, 417
Bbv12I	GWGCWC	1 cut(s)	756
BbvCI	CCTCAGC	1 cut(s)	1083
BbvI	GCAGC	1 cut(s)	1091
BccI	CCATC	3 cut(s)	504, 803, 1121
BcgI	CGANNNNNNTGC	2 cut(s)	555, 589
BciT130I	CCWGG	2 cut(s)	335, 435
BciVI	GTATCC	1 cut(s)	296
BclI	TGATCA	4 cut(s)	88, 112, 184, 208
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	4 cut(s)	332, 452, 561, 1056
BfaI	CTAG	2 cut(s)	549, 872
BfrI	CTTAAG	1 cut(s)	1037
BfuAI	ACCTGC	2 cut(s)	579, 588
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	5 cut(s)	577, 759, 801, 804, 1080
BlsI	GCNGC	5 cut(s)	578, 760, 802, 805, 1081
Bme1390I	CCNGG	3 cut(s)	335, 435, 819
Bme18I	GGWCC	3 cut(s)	736, 787, 1130
BmgT120I	GGNCC	4 cut(s)	736, 787, 821, 1130
BmiI	GGNNCC	3 cut(s)	277, 593, 1104
BmrFI	CCNGG	3 cut(s)	335, 435, 819
BpiI	GAAGAC	2 cut(s)	28, 417
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	2 cut(s)	197, 1083
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	1073, 1107
BpuMI	CCSGG	1 cut(s)	819
Bsa29I	ATCGAT	1 cut(s)	984
BsaHI	GRCGYC	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	1056
BsaJI	CCNNGG	3 cut(s)	173, 732, 807
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	1127
Bse1I	ACTGG	3 cut(s)	469, 789, 916
Bse21I	CCTNAGG	1 cut(s)	1026
Bse3DI	GCAATG	2 cut(s)	361, 1074
BseAI	TCCGGA	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	335, 435
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	3 cut(s)	173, 732, 807
BseGI	GGATG	3 cut(s)	515, 829, 912
BseLI	CCNNNNNNNGG	1 cut(s)	1127
BseMI	GCAATG	2 cut(s)	361, 1074
BseMII	CTCAG	3 cut(s)	485, 1017, 1074
BseNI	ACTGG	3 cut(s)	469, 789, 916
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	1091
BsgI	GTGCAG	1 cut(s)	862
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	4 cut(s)	202, 438, 557, 822
BshNI	GGYRCC	2 cut(s)	591, 1102
BshVI	ATCGAT	1 cut(s)	984
BsiHKAI	GWGCWC	1 cut(s)	756
BsiSI	CCGG	2 cut(s)	279, 819
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	1 cut(s)	1127
BsmAI	GTCTC	4 cut(s)	332, 452, 561, 1056
BsmFI	GGGAC	1 cut(s)	751
BsnI	GGCC	4 cut(s)	202, 438, 557, 822
Bso31I	GGTCTC	1 cut(s)	1056
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	476, 756
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	7 cut(s)	88, 112, 184, 208, 672, 981, 1000
Bsp19I	CCATGG	2 cut(s)	732, 807
BspACI	CCGC	6 cut(s)	577, 595, 739, 759, 801, 804
BspANI	GGCC	4 cut(s)	202, 438, 557, 822
BspCNI	CTCAG	3 cut(s)	486, 1018, 1075
BspDI	ATCGAT	1 cut(s)	984
BspEI	TCCGGA	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	579
BspHI	TCATGA	4 cut(s)	85, 109, 133, 157
BspLI	GGNNCC	3 cut(s)	277, 593, 1104
BspMI	ACCTGC	2 cut(s)	579, 588
BspPI	GGATC	1 cut(s)	1008
BspT104I	TTCGAA	1 cut(s)	396
BspT107I	GGYRCC	2 cut(s)	591, 1102
BspTI	CTTAAG	1 cut(s)	1037
BspTNI	GGTCTC	1 cut(s)	1056
BsrDI	GCAATG	2 cut(s)	361, 1074
BsrI	ACTGG	3 cut(s)	469, 789, 916
BssECI	CCNNGG	3 cut(s)	173, 732, 807
BssMI	GATC	7 cut(s)	88, 112, 184, 208, 672, 981, 1000
BssNI	GRCGYC	1 cut(s)	714
BssT1I	CCWWGG	3 cut(s)	173, 732, 807
Bst2UI	CCWGG	2 cut(s)	335, 435
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	2 cut(s)	713, 890
BstACI	GRCGYC	1 cut(s)	714
BstAFI	CTTAAG	1 cut(s)	1037
BstBI	TTCGAA	1 cut(s)	396
BstC8I	GCNNGC	4 cut(s)	391, 431, 440, 756
BstDEI	CTNAG	4 cut(s)	197, 494, 1026, 1083
BstDSI	CCRYGG	2 cut(s)	732, 807
BstF5I	GGATG	3 cut(s)	515, 829, 912
BstFNI	CGCG	1 cut(s)	579
BstKTI	GATC	7 cut(s)	91, 115, 187, 211, 675, 984, 1003
BstMAI	GTCTC	4 cut(s)	332, 452, 561, 1056
BstMBI	GATC	7 cut(s)	88, 112, 184, 208, 672, 981, 1000
BstMWI	GCNNNNNNNGC	6 cut(s)	226, 435, 439, 585, 594, 1076
BstNI	CCWGG	2 cut(s)	335, 435
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	3 cut(s)	333, 433, 817
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	1091
BstV2I	GAAGAC	2 cut(s)	28, 417
Bsu15I	ATCGAT	1 cut(s)	984
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	4 cut(s)	202, 438, 557, 822
BsuTUI	ATCGAT	1 cut(s)	984
BtgI	CCRYGG	2 cut(s)	732, 807
BtgZI	GCGATG	1 cut(s)	781
BtsCI	GGATG	3 cut(s)	515, 829, 912
BtsIMutI	CAGTG	1 cut(s)	476
BveI	ACCTGC	2 cut(s)	579, 588
Cac8I	GCNNGC	4 cut(s)	391, 431, 440, 756
CciI	TCATGA	4 cut(s)	85, 109, 133, 157
Cfr13I	GGNCC	4 cut(s)	736, 787, 821, 1130
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	3 cut(s)	581, 592, 601
CviQI	GTAC	3 cut(s)	581, 592, 601
DdeI	CTNAG	4 cut(s)	197, 494, 1026, 1083
DpnI	GATC	7 cut(s)	90, 114, 186, 210, 674, 983, 1002
DpnII	GATC	7 cut(s)	88, 112, 184, 208, 672, 981, 1000
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	2 cut(s)	713, 890
EarI	CTCTTC	2 cut(s)	713, 890
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	3 cut(s)	173, 732, 807
Eco147I	AGGCCT	2 cut(s)	202, 557
Eco24I	GRGCYC	1 cut(s)	756
Eco31I	GGTCTC	1 cut(s)	1056
Eco47I	GGWCC	3 cut(s)	736, 787, 1130
Eco53kI	GAGCTC	1 cut(s)	754
Eco57I	CTGAAG	2 cut(s)	956, 1100
Eco81I	CCTNAGG	1 cut(s)	1026
EcoICRI	GAGCTC	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	333, 433
EcoT14I	CCWWGG	3 cut(s)	173, 732, 807
EcoT22I	ATGCAT	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	756
ErhI	CCWWGG	3 cut(s)	173, 732, 807
FaqI	GGGAC	1 cut(s)	751
FbaI	TGATCA	4 cut(s)	88, 112, 184, 208
Fnu4HI	GCNGC	5 cut(s)	577, 759, 801, 804, 1080
FokI	GGATG	3 cut(s)	522, 816, 899
FriOI	GRGCYC	1 cut(s)	756
Fsp4HI	GCNGC	5 cut(s)	577, 759, 801, 804, 1080
FspBI	CTAG	2 cut(s)	549, 872
GluI	GCNGC	5 cut(s)	577, 759, 801, 804, 1080
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	202, 438, 557, 822
HapII	CCGG	2 cut(s)	279, 819
HgaI	GACGC	1 cut(s)	722
Hin1I	GRCGYC	1 cut(s)	714
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	4 cut(s)	413, 680, 812, 1111
HpaII	CCGG	2 cut(s)	279, 819
Hpy166II	GTNNAC	3 cut(s)	234, 530, 1133
Hpy188I	TCNGA	2 cut(s)	679, 1012
Hpy188III	TCNNGA	9 cut(s)	86, 110, 134, 158, 279, 320, 566, 1124, 1140
Hpy8I	GTNNAC	3 cut(s)	234, 530, 1133
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	2 cut(s)	263, 317
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	899
HpyCH4V	TGCA	7 cut(s)	359, 389, 429, 516, 879, 927, 1079
HpyF10VI	GCNNNNNNNGC	6 cut(s)	226, 435, 439, 585, 594, 1076
HpyF3I	CTNAG	4 cut(s)	197, 494, 1026, 1083
HpySE526I	ACGT	1 cut(s)	899
Hsp92I	GRCGYC	1 cut(s)	714
Kpn2I	TCCGGA	1 cut(s)	278
KpnI	GGTACC	1 cut(s)	595
Ksp22I	TGATCA	4 cut(s)	88, 112, 184, 208
Kzo9I	GATC	7 cut(s)	88, 112, 184, 208, 672, 981, 1000
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	1 cut(s)	1091
MaeI	CTAG	2 cut(s)	549, 872
MaeII	ACGT	1 cut(s)	899
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	7 cut(s)	90, 114, 186, 210, 674, 983, 1002
MboI	GATC	7 cut(s)	88, 112, 184, 208, 672, 981, 1000
MboII	GAAGA	6 cut(s)	28, 422, 700, 736, 877, 1106
MhlI	GDGCHC	2 cut(s)	476, 756
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	5 cut(s)	481, 865, 953, 968, 1004
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	1039
Mox20I	TGGCCA	1 cut(s)	438
Mph1103I	ATGCAT	1 cut(s)	361
MroI	TCCGGA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	1 cut(s)	1038
MslI	CAYNNNNRTG	2 cut(s)	893, 945
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	1082
MspCI	CTTAAG	1 cut(s)	1037
MspI	CCGG	2 cut(s)	279, 819
MspR9I	CCNGG	3 cut(s)	335, 435, 819
MvaI	CCWGG	2 cut(s)	335, 435
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	6 cut(s)	226, 435, 439, 585, 594, 1076
NciI	CCSGG	1 cut(s)	819
NcoI	CCATGG	2 cut(s)	732, 807
NdeII	GATC	7 cut(s)	88, 112, 184, 208, 672, 981, 1000
NlaIV	GGNNCC	3 cut(s)	277, 593, 1104
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	396
OliI	CACNNNNGTG	1 cut(s)	945
PaeI	GCATGC	1 cut(s)	393
PagI	TCATGA	4 cut(s)	85, 109, 133, 157
PceI	AGGCCT	2 cut(s)	202, 557
PfeI	GAWTC	3 cut(s)	680, 812, 1111
PkrI	GCNGC	5 cut(s)	578, 760, 802, 805, 1081
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	333, 433
PspGI	CCWGG	2 cut(s)	333, 433
PspN4I	GGNNCC	3 cut(s)	277, 593, 1104
PspPI	GGNCC	4 cut(s)	736, 787, 821, 1130
PvuII	CAGCTG	1 cut(s)	1082
RsaI	GTAC	3 cut(s)	582, 593, 602
RsaNI	GTAC	3 cut(s)	581, 592, 601
RseI	CAYNNNNRTG	2 cut(s)	893, 945
SacI	GAGCTC	1 cut(s)	756
SaqAI	TTAA	1 cut(s)	1038
SatI	GCNGC	5 cut(s)	577, 759, 801, 804, 1080
Sau3AI	GATC	7 cut(s)	88, 112, 184, 208, 672, 981, 1000
Sau96I	GGNCC	4 cut(s)	736, 787, 821, 1130
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	335, 435, 819
SduI	GDGCHC	2 cut(s)	476, 756
SfuI	TTCGAA	1 cut(s)	396
SinI	GGWCC	3 cut(s)	736, 787, 1130
SmiMI	CAYNNNNRTG	2 cut(s)	893, 945
SmlI	CTYRAG	3 cut(s)	1037, 1052, 1122
SmoI	CTYRAG	3 cut(s)	1037, 1052, 1122
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	5 cut(s)	481, 865, 953, 968, 1004
SseBI	AGGCCT	2 cut(s)	202, 557
SsiI	CCGC	6 cut(s)	577, 595, 739, 759, 801, 804
SspMI	CTAG	2 cut(s)	549, 872
SstI	GAGCTC	1 cut(s)	756
StuI	AGGCCT	2 cut(s)	202, 557
StyD4I	CCNGG	3 cut(s)	333, 433, 817
StyI	CCWWGG	3 cut(s)	173, 732, 807
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	902
TaqI	TCGA	7 cut(s)	396, 537, 565, 711, 747, 920, 984
TasI	AATT	5 cut(s)	481, 865, 953, 968, 1004
TauI	GCSGC	4 cut(s)	579, 761, 803, 806
TfiI	GAWTC	3 cut(s)	680, 812, 1111
Tru1I	TTAA	1 cut(s)	1038
Tru9I	TTAA	1 cut(s)	1038
TscAI	CASTG	1 cut(s)	476
TseI	GCWGC	1 cut(s)	1079
TspDTI	ATGAA	3 cut(s)	282, 818, 983
TspGWI	ACGGA	2 cut(s)	519, 935
TspRI	CASTG	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	1037
VpaK11BI	GGWCC	3 cut(s)	736, 787, 1130
XceI	RCATGY	1 cut(s)	393
XspI	CTAG	2 cut(s)	549, 872
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.