Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Forward (+)

53767957 .. 53779375

Gene Structure 11419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG376000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCTCTTCGGACACCGGAAAAGCACGGTGCTGCGTTTTCGGCTTGGAAACAGTTCGGTTGGGCCCAGAGGAACGATTCAGGTGATTTTCATGAGGATGGGGGTGCTTGTAAGACTCAAGTGAGCAGAGGACGTGGTAATGGAAATAAGGGTTTGACAAATTTGATGCCTCGGATAGCTAAGACGTTGGGAAAGGTGGTTCAAGTTATTCAGAGAGTAAATGTGAAATTTGCAAGCAGAGCAATTTGTAATTCGACTTCACTATTGCAGCCCAATACCAATCGTGAAAATCTCTTCCATTCGCGTCTTCATAGATTTGGATCAAAAGTTCAAAACCCCGGGCTGGATATCGGACTCTTAATTTGCGAGACTCAGAGTGATCATGGATCCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

132

Amino Acids

14.54

Weight (kDa)

10.29

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	304
AclWI	GGATC	3 cut(s)	328, 381, 394
AcsI	RAATTY	2 cut(s)	160, 227
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	203, 332
AjiI	CACGTC	1 cut(s)	134
AloI	GAACNNNNNNTCC	4 cut(s)	183, 215, 312, 344
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	3 cut(s)	328, 381, 394
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	63
ApaI	GGGCCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	32, 268
ApoI	RAATTY	2 cut(s)	160, 227
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp700I	GAANNNNTTC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	63, 64
AsuC2I	CCSGG	2 cut(s)	339, 340
AsuHPI	GGTGA	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BbsI	GAAGAC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	19, 280
BccI	CCATC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	339, 340
BcoDI	GTCTC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	33, 269
BlsI	GCNGC	2 cut(s)	34, 270
Bme1390I	CCNGG	2 cut(s)	339, 340
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	63, 64
BmiI	GGNNCC	2 cut(s)	65, 388
BmrFI	CCNGG	2 cut(s)	339, 340
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	339, 340
BsaBI	GATNNNNATC	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	170, 337, 338
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	319
BseDI	CCNNGG	3 cut(s)	170, 337, 338
BseGI	GGATG	1 cut(s)	103
BseJI	GATNNNNATC	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	19, 280
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	17, 339
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	338
Bsp120I	GGGCCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	320, 379, 386
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	65, 388
BspPI	GGATC	3 cut(s)	328, 381, 394
BssECI	CCNNGG	3 cut(s)	170, 337, 338
BssMI	GATC	3 cut(s)	320, 379, 386
Bst4CI	ACNGT	2 cut(s)	29, 54
Bst6I	CTCTTC	2 cut(s)	12, 299
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	180, 372
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	304
BstKTI	GATC	3 cut(s)	323, 382, 389
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	3 cut(s)	320, 379, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 239
BstSCI	CCNGG	2 cut(s)	337, 338
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	19, 280
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	65
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	63, 64
Cfr9I	CCCGGG	1 cut(s)	338
CseI	GACGC	1 cut(s)	293
CviAII	CATG	2 cut(s)	92, 383
CviJI	RGCY	5 cut(s)	44, 65, 179, 271, 343
CviKI_1	RGCY	5 cut(s)	44, 65, 179, 271, 343
DdeI	CTNAG	2 cut(s)	180, 372
DpnI	GATC	3 cut(s)	322, 381, 388
DpnII	GATC	3 cut(s)	320, 379, 386
Eam1104I	CTCTTC	2 cut(s)	12, 299
EarI	CTCTTC	2 cut(s)	12, 299
Eco24I	GRGCYC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	338
EcoRV	GATATC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	67
FaeI	CATG	2 cut(s)	95, 386
FaiI	YATR	3 cut(s)	93, 312, 384
FatI	CATG	2 cut(s)	91, 382
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	33, 269
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	2 cut(s)	33, 269
GluI	GCNGC	2 cut(s)	33, 269
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	17, 339
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	95, 386
HinfI	GANTC	4 cut(s)	77, 115, 354, 370
HpaII	CCGG	2 cut(s)	17, 339
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	5 cut(s)	12, 174, 213, 353, 375
Hpy188III	TCNNGA	2 cut(s)	92, 284
HpyCH4III	ACNGT	2 cut(s)	29, 54
HpyCH4IV	ACGT	2 cut(s)	133, 185
HpyCH4V	TGCA	2 cut(s)	233, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 239
HpyF3I	CTNAG	2 cut(s)	180, 372
HpySE526I	ACGT	2 cut(s)	133, 185
Hsp92II	CATG	2 cut(s)	95, 386
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	320, 379, 386
LpnPI	CCDG	5 cut(s)	30, 66, 80, 329, 352
Lsp1109I	GCAGC	2 cut(s)	19, 280
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	2 cut(s)	133, 185
MalI	GATC	3 cut(s)	322, 381, 388
MboI	GATC	3 cut(s)	320, 379, 386
MboII	GAAGA	2 cut(s)	286, 299
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	5 cut(s)	160, 227, 243, 250, 360
MlyI	GAGTC	3 cut(s)	109, 348, 364
MnlI	CCTC	5 cut(s)	15, 63, 88, 122, 180
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	2 cut(s)	17, 339
MspR9I	CCNGG	2 cut(s)	339, 340
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	2 cut(s)	41, 239
NciI	CCSGG	2 cut(s)	339, 340
NdeII	GATC	3 cut(s)	320, 379, 386
NlaIII	CATG	2 cut(s)	95, 386
NlaIV	GGNNCC	2 cut(s)	65, 388
PagI	TCATGA	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	34, 270
PleI	GAGTC	3 cut(s)	109, 348, 364
PpsI	GAGTC	3 cut(s)	109, 348, 364
PspN4I	GGNNCC	2 cut(s)	65, 388
PspOMI	GGGCCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	63, 64
PsuI	RGATCY	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	33, 269
Sau3AI	GATC	3 cut(s)	320, 379, 386
Sau96I	GGNCC	2 cut(s)	63, 64
SchI	GAGTC	3 cut(s)	109, 348, 364
ScrFI	CCNGG	2 cut(s)	339, 340
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	5 cut(s)	85, 136, 181, 188, 198
SfaNI	GCATC	1 cut(s)	156
SmaI	CCCGGG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	5 cut(s)	160, 227, 243, 250, 360
StyD4I	CCNGG	2 cut(s)	337, 338
TaaI	ACNGT	2 cut(s)	29, 54
TaiI	ACGT	2 cut(s)	136, 188
TaqI	TCGA	1 cut(s)	254
TasI	AATT	5 cut(s)	160, 227, 243, 250, 360
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TseI	GCWGC	2 cut(s)	32, 268
TspDTI	ATGAA	2 cut(s)	80, 299
TspMI	CCCGGG	1 cut(s)	338
XapI	RAATTY	2 cut(s)	160, 227
XmaI	CCCGGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.