Rmu_sc0006567.1_g000017

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006567.1
OG0013728
Physical Location & Seq
Forward (+)
63570 .. 64115
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006567.1_g000017.1.cds

Sequence Viewer

Length: 546 bp
atggaagaaaccataacccgaatagtcacagagttcgaagacctccgccatctcgaaaaccccaccaatacccaatcccaacccatctccgattccactctctccgacctccaaaccctcttcgacgctaatgaccccgaccccatggaccgcttctccaacgagctctccgccaagtccctctccctctccaatctggtcagccccatcgccgccgccatggattccggcccgggcctatttcaccctctcccatggcgtgtttctctctttgatcataataccctctgctctccgcctatcccaattacgaaatactcgctgctgatcaaaaagctcctcccggcccggccctcaaaaaggacttttgaagaagaattgaagatgtttaaggtggtgctgaacgatagtcttgggaagaaggtgaaggtgaagggcaacgataacgacatcatcaacttcctggaagctagaggacctcttagttcttaccatgtaaatccacgcattgttcttttgtgctcttgtatttatactttctggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

181

Amino Acids

20.42

Weight (kDa)

5.8

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 46, 151, 171, 213, 216, 296
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 2 cut(s) 371, 382
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 3 cut(s) 166, 337, 470
AluI AGCT 3 cut(s) 166, 337, 470
Alw21I GWGCWC 2 cut(s) 168, 524
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 4 cut(s) 229, 235, 345, 350
ApeKI GCWGC 1 cut(s) 322
AspS9I GGNCC 6 cut(s) 148, 230, 235, 346, 351, 476
AsuC2I CCSGG 4 cut(s) 233, 234, 344, 349
AsuHPI GGTGA 3 cut(s) 236, 436, 442
AsuII TTCGAA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 2 cut(s) 148, 476
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 168, 524
BbvI GCAGC 1 cut(s) 309
BccI CCATC 3 cut(s) 57, 92, 215
BciT130I CCWGG 1 cut(s) 464
BclI TGATCA 2 cut(s) 274, 327
BcnI CCSGG 4 cut(s) 233, 234, 344, 349
BfaI CTAG 1 cut(s) 471
BisI GCNGC 3 cut(s) 213, 216, 323
BlsI GCNGC 3 cut(s) 214, 217, 324
Bme1390I CCNGG 5 cut(s) 233, 234, 344, 349, 464
Bme18I GGWCC 2 cut(s) 148, 476
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 6 cut(s) 148, 230, 235, 346, 351, 476
BmrFI CCNGG 5 cut(s) 233, 234, 344, 349, 464
BpiI GAAGAC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 36
BpuMI CCSGG 4 cut(s) 233, 234, 344, 349
BsaJI CCNNGG 4 cut(s) 144, 219, 232, 254
BsaXI ACNNNNNCTCC 4 cut(s) 140, 152, 170, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 4 cut(s) 144, 219, 232, 254
BseLI CCNNNNNNNGG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 4 cut(s) 231, 237, 347, 352
BsiHKAI GWGCWC 2 cut(s) 168, 524
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 4 cut(s) 228, 233, 344, 349
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 4 cut(s) 231, 237, 347, 352
BsoBI CYCGRG 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 168, 524
Bsp143I GATC 2 cut(s) 274, 327
Bsp19I CCATGG 3 cut(s) 144, 219, 254
BspACI CCGC 6 cut(s) 46, 151, 171, 213, 216, 296
BspANI GGCC 4 cut(s) 231, 237, 347, 352
BspT104I TTCGAA 1 cut(s) 36
BssECI CCNNGG 4 cut(s) 144, 219, 232, 254
BssMI GATC 2 cut(s) 274, 327
BssT1I CCWWGG 3 cut(s) 144, 219, 254
Bst2UI CCWGG 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 125
BstBI TTCGAA 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 482
BstDSI CCRYGG 3 cut(s) 144, 219, 254
BstENI CCTNNNNNAGG 1 cut(s) 358
BstKTI GATC 2 cut(s) 277, 330
BstMBI GATC 2 cut(s) 274, 327
BstNI CCWGG 1 cut(s) 464
BstSCI CCNGG 5 cut(s) 231, 232, 342, 347, 462
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 4 cut(s) 231, 237, 347, 352
BtgI CCRYGG 3 cut(s) 144, 219, 254
BtgZI GCGATG 1 cut(s) 193
Cfr13I GGNCC 6 cut(s) 148, 230, 235, 346, 351, 476
Cfr9I CCCGGG 1 cut(s) 232
CseI GACGC 1 cut(s) 134
CviAII CATG 4 cut(s) 145, 220, 255, 494
CviJI RGCY 8 cut(s) 166, 204, 231, 237, 337, 347, 352, 470
CviKI_1 RGCY 8 cut(s) 166, 204, 231, 237, 337, 347, 352, 470
DdeI CTNAG 1 cut(s) 482
DpnI GATC 2 cut(s) 276, 329
DpnII GATC 2 cut(s) 274, 327
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 3 cut(s) 35, 160, 285
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 144, 219, 254
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 148, 476
Eco53kI GAGCTC 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 462
EcoT14I CCWWGG 3 cut(s) 144, 219, 254
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 3 cut(s) 144, 219, 254
FaeI CATG 4 cut(s) 148, 223, 258, 497
FaiI YATR 7 cut(s) 14, 146, 221, 256, 279, 495, 534
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 144, 219, 254, 493
FbaI TGATCA 2 cut(s) 274, 327
Fnu4HI GCNGC 3 cut(s) 213, 216, 323
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 3 cut(s) 213, 216, 323
FspBI CTAG 1 cut(s) 471
GluI GCNGC 3 cut(s) 213, 216, 323
HaeIII GGCC 4 cut(s) 231, 237, 347, 352
HapII CCGG 4 cut(s) 228, 233, 344, 349
HgaI GACGC 1 cut(s) 134
Hin1II CATG 4 cut(s) 148, 223, 258, 497
HinfI GANTC 2 cut(s) 92, 224
HpaII CCGG 4 cut(s) 228, 233, 344, 349
HphI GGTGA 3 cut(s) 236, 436, 442
Hpy188I TCNGA 2 cut(s) 91, 106
Hpy188III TCNNGA 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 415, 421, 427
HpyF3I CTNAG 1 cut(s) 482
Hsp92II CATG 4 cut(s) 148, 223, 258, 497
Ksp22I TGATCA 2 cut(s) 274, 327
Kzo9I GATC 2 cut(s) 274, 327
LmnI GCTCC 1 cut(s) 342
LpnPI CCDG 8 cut(s) 182, 241, 246, 357, 362, 449, 476, 526
Lsp1109I GCAGC 1 cut(s) 309
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 25
MalI GATC 2 cut(s) 276, 329
MboI GATC 2 cut(s) 274, 327
MboII GAAGA 7 cut(s) 17, 50, 112, 383, 386, 394, 430
MhlI GDGCHC 2 cut(s) 168, 524
MluCI AATT 2 cut(s) 306, 377
MmeI TCCRAC 2 cut(s) 129, 183
MseI TTAA 1 cut(s) 390
MspI CCGG 4 cut(s) 228, 233, 344, 349
MspR9I CCNGG 5 cut(s) 233, 234, 344, 349, 464
MvaI CCWGG 1 cut(s) 464
NciI CCSGG 4 cut(s) 233, 234, 344, 349
NcoI CCATGG 3 cut(s) 144, 219, 254
NdeII GATC 2 cut(s) 274, 327
NlaIII CATG 4 cut(s) 148, 223, 258, 497
NmuCI GTSAC 1 cut(s) 25
NspV TTCGAA 1 cut(s) 36
PfeI GAWTC 2 cut(s) 92, 224
PfoI TCCNGGA 1 cut(s) 462
PkrI GCNGC 3 cut(s) 214, 217, 324
PpuMI RGGWCCY 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 462
PspGI CCWGG 1 cut(s) 462
PspPI GGNCC 6 cut(s) 148, 230, 235, 346, 351, 476
PspPPI RGGWCCY 1 cut(s) 476
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 3 cut(s) 213, 216, 323
Sau3AI GATC 2 cut(s) 274, 327
Sau96I GGNCC 6 cut(s) 148, 230, 235, 346, 351, 476
ScrFI CCNGG 5 cut(s) 233, 234, 344, 349, 464
SduI GDGCHC 2 cut(s) 168, 524
SetI ASST 9 cut(s) 45, 111, 168, 339, 396, 426, 432, 472, 481
SfuI TTCGAA 1 cut(s) 36
SinI GGWCC 2 cut(s) 148, 476
SmaI CCCGGG 1 cut(s) 234
SrfI GCCCGGGC 1 cut(s) 234
Sse9I AATT 2 cut(s) 306, 377
SsiI CCGC 6 cut(s) 46, 151, 171, 213, 216, 296
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 5 cut(s) 231, 232, 342, 347, 462
StyI CCWWGG 3 cut(s) 144, 219, 254
TaqI TCGA 3 cut(s) 36, 54, 123
TasI AATT 2 cut(s) 306, 377
TauI GCSGC 2 cut(s) 215, 218
TfiI GAWTC 2 cut(s) 92, 224
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 25
TspMI CCCGGG 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 148, 476
XagI CCTNNNNNAGG 1 cut(s) 358
XmaI CCCGGG 1 cut(s) 232
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.