Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Forward (+)

30857145 .. 30864050

Gene Structure 6906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG179100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAGAAACCATAACCCGAACAGTCACAGAGCTCGAAGACCTCCGCTACCTCGAAAATCCCACCAATACCCAATCCCAACCCATCTTCGATTCCACTCTCTCCGACCTCCAAACCCTCTTCGACGCCAATGACTCCGACCCCATGGACTGCTTCCCCGACAAGATCGCCGCCAAGTCCCTCTCCCTCTCCAATCTGCCAGCCGCTCCTTTCTCTCCAAACCTCCATCGCCTAAATCTCCAAATCCGACGATTTGAACACGGCGAGTCACTTGGTTGTCCGGTAAACTTTGAGTTTTTGAACTACACCATCATCACAAGCAAATGCAAAGGACCACGGCCCATTGTGCAAAAAGAGACGCTGAGTCTTGCTGGACTCCAAGATAAAGGACACTGCTGGAGCTCTGCCGCCGCTCAATTTCCAATCCAGTCCAGATTGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cnd1

Protein Analysis

148

Amino Acids

16.56

Weight (kDa)

5.32

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	206, 413
AciI	CCGC	5 cut(s)	46, 171, 204, 408, 411
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	3 cut(s)	257, 301, 439
AhdI	GACNNNNNGTC	1 cut(s)	363
AluBI	AGCT	2 cut(s)	34, 402
AluI	AGCT	2 cut(s)	34, 402
Alw21I	GWGCWC	2 cut(s)	36, 404
Alw26I	GTCTC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	332, 339
AvaII	GGWCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	36, 404
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	36, 404
BccI	CCATC	3 cut(s)	92, 234, 317
BceAI	ACGGC	2 cut(s)	277, 353
BcoDI	GTCTC	1 cut(s)	350
BisI	GCNGC	4 cut(s)	171, 204, 408, 411
BlsI	GCNGC	4 cut(s)	172, 205, 409, 412
Bme18I	GGWCC	1 cut(s)	332
BmeRI	GACNNNNNGTC	1 cut(s)	363
BmgT120I	GGNCC	2 cut(s)	332, 339
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	144, 335
BsaWI	WCCGGW	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	144, 335
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	340
BsiHKAI	GWGCWC	2 cut(s)	36, 404
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	350
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	36, 404
Bsp143I	GATC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	5 cut(s)	46, 171, 204, 408, 411
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	354
BsrBI	CCGCTC	2 cut(s)	206, 413
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	144, 335
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	362, 444
BstDSI	CCRYGG	2 cut(s)	144, 335
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	340
BtgI	CCRYGG	2 cut(s)	144, 335
BtgZI	GCGATG	1 cut(s)	212
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	332, 339
CseI	GACGC	2 cut(s)	134, 367
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	5 cut(s)	34, 203, 340, 402, 443
CviKI_1	RGCY	5 cut(s)	34, 203, 340, 402, 443
DdeI	CTNAG	2 cut(s)	362, 444
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DriI	GACNNNNNGTC	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	125
Eam1105I	GACNNNNNGTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	2 cut(s)	34, 402
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	36, 404
Eco47I	GGWCC	1 cut(s)	332
Eco53kI	GAGCTC	2 cut(s)	34, 402
EcoICRI	GAGCTC	2 cut(s)	34, 402
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	36, 404
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	14, 146
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	171, 204, 408, 411
FriOI	GRGCYC	2 cut(s)	36, 404
Fsp4HI	GCNGC	4 cut(s)	171, 204, 408, 411
GluI	GCNGC	4 cut(s)	171, 204, 408, 411
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	2 cut(s)	134, 367
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	148
HinfI	GANTC	5 cut(s)	92, 134, 266, 364, 375
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	106, 139, 248
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	2 cut(s)	128, 252
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	327, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	2 cut(s)	362, 444
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	211, 399
LpnPI	CCDG	5 cut(s)	213, 294, 357, 382, 440
MaeIII	GTNAC	2 cut(s)	25, 267
MalI	GATC	1 cut(s)	167
MbiI	CCGCTC	2 cut(s)	206, 413
MboI	GATC	1 cut(s)	165
MboII	GAAGA	4 cut(s)	17, 50, 79, 112
MhlI	GDGCHC	2 cut(s)	36, 404
MluCI	AATT	1 cut(s)	416
MlyI	GAGTC	4 cut(s)	128, 275, 369, 373
MmeI	TCCRAC	3 cut(s)	129, 162, 271
MnlI	CCTC	7 cut(s)	53, 62, 119, 128, 191, 197, 233
MspI	CCGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	25, 267
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	172, 205, 409, 412
PleI	GAGTC	4 cut(s)	128, 274, 369, 372
PpsI	GAGTC	4 cut(s)	128, 274, 369, 372
Psp124BI	GAGCTC	2 cut(s)	36, 404
PspPI	GGNCC	2 cut(s)	332, 339
SacI	GAGCTC	2 cut(s)	36, 404
SatI	GCNGC	4 cut(s)	171, 204, 408, 411
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	332, 339
SchI	GAGTC	4 cut(s)	128, 275, 369, 373
SduI	GDGCHC	2 cut(s)	36, 404
SetI	ASST	6 cut(s)	36, 45, 54, 111, 225, 404
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	5 cut(s)	46, 171, 204, 408, 411
SstI	GAGCTC	2 cut(s)	36, 404
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	4 cut(s)	36, 54, 90, 123
TasI	AATT	1 cut(s)	416
TauI	GCSGC	4 cut(s)	173, 206, 410, 413
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	2 cut(s)	25, 267
Tsp45I	GTSAC	2 cut(s)	25, 267
TspRI	CASTG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.