Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Forward (+)

17868710 .. 17869630

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTTCCAAGAAGATTTCAAATGGCTTAGAGTTTTGAAGTTGGAACCTCTAGCTCAATTAGTAGTGTTACCAACTGAAATTGGGAATATGGTCCACTTGAGATATTTCAGTCCAAGTTGCTGTCAAATCAATCATCTGCCATCAACCATGGGTAATTTGGTGCGTATGCAAACTCTTGATATCCATGATTCTGTTCTCCTTGAGAGTAAAACCATTGCGAATGTAATATCGAGAATGGAAGAACTGAGACATTTGTATATGCCCTACTTGAACCGGTGGAGCAGGAGGATACAACTGTCTACTCTTTGCAAATTGCAAACGTTATGTCATGCTTCAAGCTTGTCTTGGGATTTGAGTGATCTTGTGAAGTTGGCCAGTCTTCGAAAACTAAGCATAGAACTGTTTGGAAAGTTGAAAAATCTGAAAGAAATCTTGAGGCGGTCAAGCAGTACGCTGGATGGTATTCGTTCTCTGAGTGTTTGCAACAATGATGAAATTGAATGTGCTGGAGGTGCTCGGGAGGTTAGAGAAATAGTGTTAAGCTGTCGTTATGTGTACAAGCTGAGGGCATTTGGGCCAATGCATGGAAGAGTTACTGGCAGAGCTCCAGTACTATTAGAACCTCACCACGTTATTGTTGCGTTGTTGTCTTCAGCTCAAGGAAGACCAATTGGCAATACTAGAGAAGCTGCCAAACTTCTTTCACTAATTAGACATGTTTTTCATGAAAGTGCAAGCACATTGGTCTGCTCCAGAGGAGGCTTTCCCCGTCTTGAAAATCTTTTTCTTCGTGGCTTGATTAAGGTACAGGAGTGGAGGGTGGAGGAAGGAGCCATGCCTAGTCTCTGTCGATTACACATTGCAGATTGCCCAGAATTGAAGGAAGTTCCAGAAGGGCTGGGATATATGGATACCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

306

Amino Acids

34.72

Weight (kDa)

9.03

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	4 - 288	1.4e-21	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	1 cut(s)	439
AclI	AACGTT	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	4 cut(s)	451, 557, 612, 807
AfiI	CCNNNNNNNGG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	715
AgeI	ACCGGT	1 cut(s)	273
AgsI	TTSAA	8 cut(s)	19, 37, 271, 336, 415, 500, 776, 880
AluBI	AGCT	7 cut(s)	53, 339, 543, 562, 605, 656, 689
AluI	AGCT	7 cut(s)	53, 339, 543, 562, 605, 656, 689
Alw21I	GWGCWC	2 cut(s)	517, 607
Alw26I	GTCTC	2 cut(s)	241, 848
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	2 cut(s)	372, 575
ApeKI	GCWGC	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AsiGI	ACCGGT	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	91, 575
AsuHPI	GGTGA	1 cut(s)	617
AsuII	TTCGAA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	91
BaeI	ACNNNNGTAYC	4 cut(s)	281, 314, 797, 830
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	607
BbsI	GAAGAC	3 cut(s)	371, 642, 670
Bbv12I	GWGCWC	2 cut(s)	517, 607
BbvCI	CCTCAGC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	676
BccI	CCATC	2 cut(s)	148, 452
BciVI	GTATCC	2 cut(s)	282, 904
BcoDI	GTCTC	2 cut(s)	241, 848
BfaI	CTAG	4 cut(s)	50, 681, 840, 919
BfuI	GTATCC	2 cut(s)	282, 904
BisI	GCNGC	1 cut(s)	690
BlsI	GCNGC	1 cut(s)	691
BmcAI	AGTACT	1 cut(s)	612
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	2 cut(s)	91, 575
BmiI	GGNNCC	2 cut(s)	45, 832
BpiI	GAAGAC	3 cut(s)	371, 642, 670
BpmI	CTGGAG	3 cut(s)	528, 591, 736
Bpu10I	CCTNAGC	1 cut(s)	563
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	4 cut(s)	118, 221, 454, 642
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	3 cut(s)	375, 601, 608
Bse3DI	GCAATG	2 cut(s)	213, 858
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMI	GCAATG	2 cut(s)	213, 858
BseMII	CTCAG	3 cut(s)	236, 464, 554
BseNI	ACTGG	3 cut(s)	375, 601, 608
BseRI	GAGGAG	1 cut(s)	771
BseXI	GCAGC	1 cut(s)	676
BseYI	CCCAGC	1 cut(s)	898
BshFI	GGCC	2 cut(s)	374, 577
BshTI	ACCGGT	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	517, 607
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	2 cut(s)	241, 848
BsnI	GGCC	2 cut(s)	374, 577
BsoBI	CYCGRG	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	517, 607
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	374, 577
BspCNI	CTCAG	3 cut(s)	237, 465, 555
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	45, 832
BspT104I	TTCGAA	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	213, 858
BsrFI	RCCGGY	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	375, 601, 608
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	297, 402
Bst6I	CTCTTC	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	5 cut(s)	26, 245, 389, 473, 563
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	241, 848
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	719
BstV1I	GCAGC	1 cut(s)	676
BstV2I	GAAGAC	3 cut(s)	371, 642, 670
BsuI	GTATCC	2 cut(s)	282, 904
BsuRI	GGCC	2 cut(s)	374, 577
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	736
CciI	TCATGA	1 cut(s)	724
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	91, 575
Csp6I	GTAC	4 cut(s)	450, 556, 611, 806
CspAI	ACCGGT	1 cut(s)	273
CviAII	CATG	7 cut(s)	148, 185, 329, 584, 716, 725, 835
CviQI	GTAC	4 cut(s)	450, 556, 611, 806
DdeI	CTNAG	5 cut(s)	26, 245, 389, 473, 563
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	605
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	7 cut(s)	151, 188, 332, 587, 719, 728, 838
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	7 cut(s)	147, 184, 328, 583, 715, 724, 834
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	690
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	1 cut(s)	690
FspBI	CTAG	4 cut(s)	50, 681, 840, 919
GluI	GCNGC	1 cut(s)	690
GsaI	CCCAGC	1 cut(s)	902
GsuI	CTGGAG	3 cut(s)	528, 591, 736
HaeIII	GGCC	2 cut(s)	374, 577
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	7 cut(s)	151, 188, 332, 587, 719, 728, 838
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	3 cut(s)	94, 300, 556
Hpy188I	TCNGA	2 cut(s)	423, 474
Hpy188III	TCNNGA	8 cut(s)	176, 231, 433, 518, 725, 753, 773, 890
Hpy8I	GTNNAC	3 cut(s)	94, 300, 556
HpyAV	CCTTC	3 cut(s)	821, 874, 887
HpyCH4III	ACNGT	2 cut(s)	297, 402
HpyCH4IV	ACGT	2 cut(s)	320, 630
HpyCH4V	TGCA	7 cut(s)	169, 309, 316, 483, 583, 734, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	5 cut(s)	26, 245, 389, 473, 563
HpySE526I	ACGT	2 cut(s)	320, 630
Hsp92II	CATG	7 cut(s)	151, 188, 332, 587, 719, 728, 838
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	4 cut(s)	279, 610, 755, 830
Lsp1109I	GCAGC	1 cut(s)	676
MaeI	CTAG	4 cut(s)	50, 681, 840, 919
MaeII	ACGT	2 cut(s)	320, 630
MaeIII	GTNAC	2 cut(s)	66, 592
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	7 cut(s)	23, 251, 371, 600, 642, 675, 779
MfeI	CAATTG	1 cut(s)	669
MhlI	GDGCHC	2 cut(s)	517, 607
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	8 cut(s)	56, 78, 154, 311, 495, 669, 708, 875
MluNI	TGGCCA	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	21
Mox20I	TGGCCA	1 cut(s)	374
Mph1103I	ATGCAT	1 cut(s)	585
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	539, 801
MslI	CAYNNNNRTG	1 cut(s)	729
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	1 cut(s)	274
MunI	CAATTG	1 cut(s)	669
MwoI	GCNNNNNNNGC	1 cut(s)	512
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	7 cut(s)	151, 188, 332, 587, 719, 728, 838
NlaIV	GGNNCC	2 cut(s)	45, 832
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	1 cut(s)	719
NspV	TTCGAA	1 cut(s)	382
PagI	TCATGA	1 cut(s)	724
PciI	ACATGT	1 cut(s)	715
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	584
PinAI	ACCGGT	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	691
PscI	ACATGT	1 cut(s)	715
Psp124BI	GAGCTC	1 cut(s)	607
Psp1406I	AACGTT	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	898
PspN4I	GGNNCC	2 cut(s)	45, 832
PspPI	GGNCC	2 cut(s)	91, 575
RsaI	GTAC	4 cut(s)	451, 557, 612, 807
RsaNI	GTAC	4 cut(s)	450, 556, 611, 806
RseI	CAYNNNNRTG	1 cut(s)	729
SacI	GAGCTC	1 cut(s)	607
SaqAI	TTAA	2 cut(s)	539, 801
SatI	GCNGC	1 cut(s)	690
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	2 cut(s)	91, 575
ScaI	AGTACT	1 cut(s)	612
SduI	GDGCHC	2 cut(s)	517, 607
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	4 cut(s)	97, 200, 433, 657
SmoI	CTYRAG	4 cut(s)	97, 200, 433, 657
Sse9I	AATT	8 cut(s)	56, 78, 154, 311, 495, 669, 708, 875
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	4 cut(s)	50, 681, 840, 919
SstI	GAGCTC	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	297, 402
TaiI	ACGT	2 cut(s)	323, 633
TaqI	TCGA	3 cut(s)	230, 382, 850
TasI	AATT	8 cut(s)	56, 78, 154, 311, 495, 669, 708, 875
TatI	WGTACW	2 cut(s)	555, 610
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	539, 801
Tru9I	TTAA	2 cut(s)	539, 801
TseI	GCWGC	1 cut(s)	689
TspDTI	ATGAA	3 cut(s)	507, 713, 741
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	91
XceI	RCATGY	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	299
XspI	CTAG	4 cut(s)	50, 681, 840, 919
ZrmI	AGTACT	1 cut(s)	612
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.