Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Reverse (-)

46098259 .. 46103270

Gene Structure 5012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAGAAACCATAACCCAAATAGTCACAGAGCTCGAAGACCTCCGCCACCTCGAAAACCCCACCAATACCCAATCCCAACCCATCTCCGATTCCACTCTCTCCGACCTCCAAAGCCTCTTTGGCGCCAATGACCCCGACCCAATGGACCGCTTCTCGGACGAGCTTGCCACGAAGTCCCTCTCCCTCTCCAACCTGGTCCGCCCCATCGCCGCAGCCATCGATTCCGGCGCGGCCCATTTCACCCTCTCCCATGGCGTAAAAGAAGAGGCGGAGAACGTGCCGGTGAACCCTAAGGACTTAACGGCGACGGGCCAAACCAGCTCGGAGTTTTCAAGAGCTCCGTTTAACCTGATTCAGAACCCTAAGCCAGAACAGAAGTCGGCGATTTGGAGTAGGGCTGAGAAGACGCCGACTAAAGCTTCCAAGGCCAAAGCTTCCGATCCGGGGATGCCTCTTCGGACACCGGAAAAGCACGGTGCTGCGTTTTCGGCTAGGAAACGGTTCGGTTGGGCCCAGAGGAACAATTCAGGTGATTTTCATGAGGATGGGGGTGCTTGTAAGACTCAAGTGAGCAGAGGACGTGGTAATGGAAATAAGGGTTTGACAAATTTGACGCCTCGGATAGCCAGGGCGTTGGGAAAGGTGGTTCAAGTTCTTCAGAGAGTAAATGTGAAATTTGCAAGCAGAGCAATTTGTAATTCGACTTCACTATTGCAGACGCTTGCGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

245

Amino Acids

26.39

Weight (kDa)

9.14

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	233
AciI	CCGC	6 cut(s)	46, 151, 202, 213, 233, 272
AclWI	GGATC	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	610, 677
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	3 cut(s)	126, 410, 617
AfiI	CCNNNNNNNGG	2 cut(s)	157, 447
AgsI	TTSAA	2 cut(s)	336, 653
AjiI	CACGTC	2 cut(s)	584, 732
AjnI	CCWGG	2 cut(s)	195, 629
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
AluBI	AGCT	6 cut(s)	34, 166, 324, 341, 422, 437
AluI	AGCT	6 cut(s)	34, 166, 324, 341, 422, 437
Alw21I	GWGCWC	2 cut(s)	36, 343
AlwI	GGATC	1 cut(s)	437
AoxI	GGCC	4 cut(s)	234, 313, 429, 513
ApaI	GGGCCC	1 cut(s)	517
ApeKI	GCWGC	2 cut(s)	215, 482
ApoI	RAATTY	2 cut(s)	610, 677
Asp700I	GAANNNNTTC	1 cut(s)	503
AspLEI	GCGC	2 cut(s)	128, 233
AspS9I	GGNCC	6 cut(s)	148, 199, 235, 313, 513, 514
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	3 cut(s)	235, 298, 545
AvaII	GGWCC	2 cut(s)	148, 199
AxyI	CCTNAGG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	3 cut(s)	36, 343, 517
BarI	GAAGNNNNNNTAC	2 cut(s)	691, 723
BbsI	GAAGAC	2 cut(s)	45, 413
Bbv12I	GWGCWC	2 cut(s)	36, 343
BbvI	GCAGC	2 cut(s)	227, 469
BccI	CCATC	4 cut(s)	92, 215, 227, 542
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	2 cut(s)	197, 631
BcnI	CCSGG	1 cut(s)	447
BfaI	CTAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	4 cut(s)	213, 216, 234, 483
BlsI	GCNGC	4 cut(s)	214, 217, 235, 484
Bme1390I	CCNGG	3 cut(s)	197, 447, 631
Bme18I	GGWCC	2 cut(s)	148, 199
BmgBI	CACGTC	2 cut(s)	584, 732
BmgT120I	GGNCC	6 cut(s)	148, 199, 235, 313, 513, 514
BmiI	GGNNCC	2 cut(s)	127, 515
BmrFI	CCNGG	3 cut(s)	197, 447, 631
BmsI	GCATC	1 cut(s)	441
BpiI	GAAGAC	2 cut(s)	45, 413
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	447
Bsa29I	ATCGAT	1 cut(s)	222
BsaHI	GRCGYC	3 cut(s)	126, 410, 617
BsaJI	CCNNGG	5 cut(s)	253, 426, 446, 620, 630
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 447
Bse118I	RCCGGY	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	197, 631
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	5 cut(s)	253, 426, 446, 620, 630
BseGI	GGATG	2 cut(s)	456, 553
BseLI	CCNNNNNNNGG	2 cut(s)	157, 447
BseMII	CTCAG	1 cut(s)	393
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	227, 469
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	4 cut(s)	236, 315, 431, 515
BshNI	GGYRCC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	36, 343
BsiSI	CCGG	4 cut(s)	228, 284, 446, 467
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	157, 447
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	236, 315, 431, 515
Bsp120I	GGGCCC	1 cut(s)	513
Bsp1286I	GDGCHC	3 cut(s)	36, 343, 517
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	6 cut(s)	46, 151, 202, 213, 233, 272
BspANI	GGCC	4 cut(s)	236, 315, 431, 515
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	233
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	127, 515
BspPI	GGATC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	5 cut(s)	253, 426, 446, 620, 630
BssMI	GATC	1 cut(s)	442
BssNI	GRCGYC	3 cut(s)	126, 410, 617
BssT1I	CCWWGG	2 cut(s)	253, 426
Bst2UI	CCWGG	2 cut(s)	197, 631
Bst4CI	ACNGT	2 cut(s)	479, 504
Bst6I	CTCTTC	2 cut(s)	261, 462
BstACI	GRCGYC	3 cut(s)	126, 410, 617
BstC8I	GCNNGC	3 cut(s)	168, 685, 726
BstDEI	CTNAG	3 cut(s)	294, 366, 402
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	456, 553
BstFNI	CGCG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 233
BstKTI	GATC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 321, 428, 491, 689
BstNI	CCWGG	2 cut(s)	197, 631
BstSCI	CCNGG	3 cut(s)	195, 445, 629
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	227, 469
BstV2I	GAAGAC	2 cut(s)	45, 413
BstXI	CCANNNNNNTGG	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	4 cut(s)	236, 315, 431, 515
BsuTUI	ATCGAT	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	193
BtrI	CACGTC	2 cut(s)	584, 732
BtsCI	GGATG	2 cut(s)	456, 553
Cac8I	GCNNGC	3 cut(s)	168, 685, 726
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	128, 233
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	6 cut(s)	148, 199, 235, 313, 513, 514
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	3 cut(s)	418, 625, 730
CsiI	ACCWGGT	1 cut(s)	195
CviAII	CATG	2 cut(s)	254, 542
DdeI	CTNAG	3 cut(s)	294, 366, 402
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	261, 462
EarI	CTCTTC	2 cut(s)	261, 462
EciI	GGCGGA	3 cut(s)	35, 191, 287
Ecl136II	GAGCTC	2 cut(s)	34, 341
Eco130I	CCWWGG	2 cut(s)	253, 426
Eco24I	GRGCYC	3 cut(s)	36, 343, 517
Eco47I	GGWCC	2 cut(s)	148, 199
Eco53kI	GAGCTC	2 cut(s)	34, 341
Eco57I	CTGAAG	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	294
EcoICRI	GAGCTC	2 cut(s)	34, 341
EcoRII	CCWGG	2 cut(s)	195, 629
EcoT14I	CCWWGG	2 cut(s)	253, 426
EcoT38I	GRGCYC	3 cut(s)	36, 343, 517
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	2 cut(s)	253, 426
FaeI	CATG	2 cut(s)	257, 545
FaiI	YATR	3 cut(s)	14, 255, 543
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	253, 541
Fnu4HI	GCNGC	4 cut(s)	213, 216, 234, 483
FokI	GGATG	2 cut(s)	463, 560
FriOI	GRGCYC	3 cut(s)	36, 343, 517
Fsp4HI	GCNGC	4 cut(s)	213, 216, 234, 483
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	2 cut(s)	127, 232
GluI	GCNGC	4 cut(s)	213, 216, 234, 483
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	236, 315, 431, 515
HapII	CCGG	4 cut(s)	228, 284, 446, 467
HgaI	GACGC	3 cut(s)	418, 625, 730
HhaI	GCGC	2 cut(s)	128, 233
Hin1I	GRCGYC	3 cut(s)	126, 410, 617
Hin1II	CATG	2 cut(s)	257, 545
Hin6I	GCGC	2 cut(s)	126, 231
HinP1I	GCGC	2 cut(s)	126, 231
HindIII	AAGCTT	2 cut(s)	420, 435
HinfI	GANTC	4 cut(s)	92, 224, 355, 565
HpaII	CCGG	4 cut(s)	228, 284, 446, 467
HphI	GGTGA	3 cut(s)	235, 298, 545
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	9 cut(s)	91, 106, 160, 328, 360, 442, 462, 624, 663
Hpy188III	TCNNGA	2 cut(s)	336, 542
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	2 cut(s)	313, 733
HpyCH4III	ACNGT	2 cut(s)	479, 504
HpyCH4IV	ACGT	3 cut(s)	279, 583, 731
HpyCH4V	TGCA	2 cut(s)	683, 718
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 321, 428, 491, 689
HpyF3I	CTNAG	3 cut(s)	294, 366, 402
HpySE526I	ACGT	3 cut(s)	279, 583, 731
Hsp92I	GRCGYC	3 cut(s)	126, 410, 617
Hsp92II	CATG	2 cut(s)	257, 545
HspAI	GCGC	2 cut(s)	126, 231
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	2 cut(s)	227, 469
LweI	GCATC	1 cut(s)	441
MabI	ACCWGGT	1 cut(s)	195
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	3 cut(s)	279, 583, 731
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	6 cut(s)	17, 50, 278, 418, 449, 650
MhlI	GDGCHC	3 cut(s)	36, 343, 517
MluCI	AATT	5 cut(s)	526, 610, 677, 693, 700
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	2 cut(s)	129, 216
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	2 cut(s)	302, 348
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	4 cut(s)	228, 284, 446, 467
MspR9I	CCNGG	3 cut(s)	197, 447, 631
MvaI	CCWGG	2 cut(s)	197, 631
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	123, 321, 428, 491, 689
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	447
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	257, 545
NlaIV	GGNNCC	2 cut(s)	127, 515
NmuCI	GTSAC	1 cut(s)	25
PagI	TCATGA	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	3 cut(s)	92, 224, 355
PkrI	GCNGC	4 cut(s)	214, 217, 235, 484
PleI	GAGTC	1 cut(s)	559
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	559
Psp124BI	GAGCTC	2 cut(s)	36, 343
Psp6I	CCWGG	2 cut(s)	195, 629
PspGI	CCWGG	2 cut(s)	195, 629
PspN4I	GGNNCC	2 cut(s)	127, 515
PspOMI	GGGCCC	1 cut(s)	513
PspPI	GGNCC	6 cut(s)	148, 199, 235, 313, 513, 514
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	2 cut(s)	36, 343
SaqAI	TTAA	2 cut(s)	302, 348
SatI	GCNGC	4 cut(s)	213, 216, 234, 483
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	6 cut(s)	148, 199, 235, 313, 513, 514
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	3 cut(s)	197, 447, 631
SduI	GDGCHC	3 cut(s)	36, 343, 517
SexAI	ACCWGGT	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	441
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	2 cut(s)	148, 199
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	5 cut(s)	526, 610, 677, 693, 700
SsiI	CCGC	6 cut(s)	46, 151, 202, 213, 233, 272
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	2 cut(s)	36, 343
StyD4I	CCNGG	3 cut(s)	195, 445, 629
StyI	CCWWGG	2 cut(s)	253, 426
TaaI	ACNGT	2 cut(s)	479, 504
TaiI	ACGT	3 cut(s)	282, 586, 734
TaqI	TCGA	4 cut(s)	36, 54, 222, 704
TasI	AATT	5 cut(s)	526, 610, 677, 693, 700
TauI	GCSGC	2 cut(s)	215, 236
TfiI	GAWTC	3 cut(s)	92, 224, 355
Tru1I	TTAA	2 cut(s)	302, 348
Tru9I	TTAA	2 cut(s)	302, 348
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	215, 482
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	530
TspGWI	ACGGA	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	148, 199
XapI	RAATTY	2 cut(s)	610, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.