Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000245.1

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Forward (+)

47847 .. 48314

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000245.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgggtaatttggtgcgtatgcaaactcttgatatccatgattctgttctccttgagagtaaaaccattgcgaatgtaatatcgagaatggaagaactgagacatttgtatatgccctacttgaaccggtggagcaggaggatacaactgtctactctttgcaaattacaaacgttatgtcatgcttcaagcttgtcttgggatttgagtgatcttgtgaagttggccagtcttcgaaaactaagcatagaactgttaggaaagttgaaaaatctgaaagaaatcttggggcggtcaagcagtacgctggatggtattcgttctctgagtgtttgcaacaatgatgaaattgaatgtgctggaggtgctcgggaggttagagaaatagtgttaagctgtcgttatgtgtacaagctgagggcatttgggccaatggaagagttaccggcagagctccagtactattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

155

Amino Acids

17.75

Weight (kDa)

8.62

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	292
AclI	AACGTT	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	225
AfaI	GTAC	3 cut(s)	304, 410, 461
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	124, 189, 268, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	4 cut(s)	192, 396, 415, 454
AluI	AGCT	4 cut(s)	192, 396, 415, 454
Alw21I	GWGCWC	2 cut(s)	370, 456
Alw26I	GTCTC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	2 cut(s)	225, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AsiGI	ACCGGT	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	428
AsuII	TTCGAA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	369
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BalI	TGGCCA	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	370, 456
BbvCI	CCTCAGC	1 cut(s)	416
BccI	CCATC	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	2 cut(s)	381, 440
Bpu10I	CCTNAGC	1 cut(s)	416
Bpu14I	TTCGAA	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	126
Bse118I	RCCGGY	2 cut(s)	126, 445
Bse1I	ACTGG	2 cut(s)	228, 457
Bse3DI	GCAATG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	89, 317, 407
BseNI	ACTGG	2 cut(s)	228, 457
BshFI	GGCC	2 cut(s)	227, 430
BshTI	ACCGGT	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	370, 456
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	127, 446
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	227, 430
BsoBI	CYCGRG	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	370, 456
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	2 cut(s)	227, 430
BspCNI	CTCAG	3 cut(s)	90, 318, 408
BspT104I	TTCGAA	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	126, 445
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	228, 457
BssAI	RCCGGY	2 cut(s)	126, 445
BssMI	GATC	1 cut(s)	211
Bst4CI	ACNGT	2 cut(s)	150, 255
Bst6I	CTCTTC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	235
BstDEI	CTNAG	4 cut(s)	98, 242, 326, 416
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	224
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	227, 430
BtsCI	GGATG	1 cut(s)	316
Cfr10I	RCCGGY	2 cut(s)	126, 445
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	3 cut(s)	303, 409, 460
CspAI	ACCGGT	1 cut(s)	126
CviAII	CATG	2 cut(s)	38, 182
CviJI	RGCY	6 cut(s)	192, 227, 396, 415, 430, 454
CviKI_1	RGCY	6 cut(s)	192, 227, 396, 415, 430, 454
CviQI	GTAC	3 cut(s)	303, 409, 460
DdeI	CTNAG	4 cut(s)	98, 242, 326, 416
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	2 cut(s)	41, 185
FaiI	YATR	8 cut(s)	20, 39, 111, 113, 178, 183, 248, 405
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FatI	CATG	2 cut(s)	37, 181
FblI	GTMKAC	1 cut(s)	152
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	456
GsuI	CTGGAG	2 cut(s)	381, 440
HaeIII	GGCC	2 cut(s)	227, 430
HapII	CCGG	2 cut(s)	127, 446
Hin1II	CATG	2 cut(s)	41, 185
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	127, 446
Hpy166II	GTNNAC	2 cut(s)	153, 409
Hpy188I	TCNGA	2 cut(s)	276, 327
Hpy188III	TCNNGA	3 cut(s)	29, 84, 371
Hpy8I	GTNNAC	2 cut(s)	153, 409
HpyCH4III	ACNGT	2 cut(s)	150, 255
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	22, 162, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	4 cut(s)	98, 242, 326, 416
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	41, 185
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	132, 459
LpnPI	CCDG	6 cut(s)	121, 140, 241, 293, 345, 459
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	104, 224, 449
MhlI	GDGCHC	2 cut(s)	370, 456
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	3 cut(s)	7, 164, 348
MluNI	TGGCCA	1 cut(s)	227
MnlI	CCTC	4 cut(s)	132, 356, 367, 411
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	2 cut(s)	127, 446
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	41, 185
NspV	TTCGAA	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	456
Psp1406I	AACGTT	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	428
RsaI	GTAC	3 cut(s)	304, 410, 461
RsaNI	GTAC	3 cut(s)	303, 409, 460
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	392
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	370, 456
SetI	ASST	7 cut(s)	176, 194, 367, 378, 398, 417, 456
SfuI	TTCGAA	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	7, 164, 348
SsiI	CCGC	1 cut(s)	292
SstI	GAGCTC	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	150, 255
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	83, 235
TasI	AATT	3 cut(s)	7, 164, 348
TatI	WGTACW	2 cut(s)	408, 459
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.