Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013728

Physical Location & Seq

Genomic Coordinates Reverse (-)

77618939 .. 77620034

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAGAAACCATAACCCGAATAGTCACAGATCTCGAACACCTCAGCCACCTCGAAAACCCCACCAATACCCAATCCCAACCCATCTCCGATTCCACTCTCTCCGACCTCCAAAGCCTCTTTGACGCCAATGATCCCGACCCCATGGACCGCTTCTCCAACGTGCTTGCCGCCAAGTCCCTCTCCCTCTCCAATCTGGTCCGCCCTATTGCCGCCACCATCGATTCTGGCGCGGCCCATTTCATCCTCTCCCATGGCCCTCAAAAATGGACTTTCGAAGAAGAATTGAAGATGTTCAAGGTGGTGCTGAACGATCGTAATGGGAAGAAGGTGAAGGTGAAGGACAACGAGAACGACATCATCAACTTCTTGGAAGCTAGAGTCTTGGTGATGGTTGCTTATGATCTTCATTTGAGTCTTGCATTGTTGCTTCTATTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cnd1

Protein Analysis

148

Amino Acids

16.46

Weight (kDa)

4.96

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013728)

Species	Orthologous Gene IDs
malus_domestica	MD13G1128100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400321
rosa_laevigata	RLG00000019087 RLG00000019851 RLG00000029817 RLG00000036223
rosa_multiflora	Rmu_co8364043.1_g000001 Rmu_sc0000446.1_g000020 Rmu_sc0006567.1_g000017 Rmu_ssc0000245.1_g000016 Rmu_ssc0000245.1_g000028
rosa_roxburghii	Rroxscaffold_3G00246800 Rroxscaffold_3G00250210
rosa_rugosa	Rorug04G0024800
rosa_samantha	Rh2DG376000 Rh5DG042900 Rh6BG179100 Rh6DG076300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	233
AciI	CCGC	5 cut(s)	151, 171, 202, 213, 233
AclWI	GGATC	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	289, 298
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	234, 256
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	4 cut(s)	148, 199, 235, 257
AsuHPI	GGTGA	3 cut(s)	343, 349, 400
AsuII	TTCGAA	1 cut(s)	276
AvaII	GGWCC	2 cut(s)	148, 199
BbvCI	CCTCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	92, 227, 385
BfaI	CTAG	1 cut(s)	378
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	3 cut(s)	171, 213, 234
BlsI	GCNGC	3 cut(s)	172, 214, 235
Bme18I	GGWCC	2 cut(s)	148, 199
BmgT120I	GGNCC	4 cut(s)	148, 199, 235, 257
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	144, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	144, 253
BseGI	GGATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	236, 258
BshVI	ATCGAT	1 cut(s)	222
BsiEI	CGRYCG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	236, 258
Bsp119I	TTCGAA	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	31, 133, 313, 403
Bsp19I	CCATGG	2 cut(s)	144, 253
BspACI	CCGC	5 cut(s)	151, 171, 202, 213, 233
BspANI	GGCC	2 cut(s)	236, 258
BspCNI	CTCAG	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	233
BspPI	GGATC	1 cut(s)	128
BspT104I	TTCGAA	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	144, 253
BssMI	GATC	4 cut(s)	31, 133, 313, 403
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	144, 253
BstACI	GRCGYC	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	44
BstDSI	CCRYGG	2 cut(s)	144, 253
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	34, 136, 316, 406
BstMBI	GATC	4 cut(s)	31, 133, 313, 403
BstMCI	CGRYCG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	236, 258
BsuTUI	ATCGAT	1 cut(s)	222
BtgI	CCRYGG	2 cut(s)	144, 253
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	4 cut(s)	148, 199, 235, 257
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	1 cut(s)	134
CviAII	CATG	2 cut(s)	145, 254
CviJI	RGCY	5 cut(s)	48, 117, 236, 258, 377
CviKI_1	RGCY	5 cut(s)	48, 117, 236, 258, 377
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	4 cut(s)	33, 135, 315, 405
DpnII	GATC	4 cut(s)	31, 133, 313, 403
EciI	GGCGGA	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	144, 253
Eco47I	GGWCC	2 cut(s)	148, 199
EcoT14I	CCWWGG	2 cut(s)	144, 253
ErhI	CCWWGG	2 cut(s)	144, 253
FaeI	CATG	2 cut(s)	148, 257
FaiI	YATR	4 cut(s)	14, 146, 255, 402
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	144, 253
Fnu4HI	GCNGC	3 cut(s)	171, 213, 234
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	171, 213, 234
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	171, 213, 234
HaeIII	GGCC	2 cut(s)	236, 258
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	148, 257
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	4 cut(s)	92, 224, 381, 415
HphI	GGTGA	3 cut(s)	343, 349, 400
Hpy188I	TCNGA	2 cut(s)	91, 106
Hpy188III	TCNNGA	3 cut(s)	35, 137, 441
HpyAV	CCTTC	3 cut(s)	322, 328, 334
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	422
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	148, 257
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	31, 133, 313, 403
LpnPI	CCDG	2 cut(s)	182, 213
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	4 cut(s)	33, 135, 315, 405
MboI	GATC	4 cut(s)	31, 133, 313, 403
MboII	GAAGA	6 cut(s)	17, 290, 293, 301, 337, 398
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	390, 424
MmeI	TCCRAC	2 cut(s)	129, 183
MnlI	CCTC	8 cut(s)	53, 62, 119, 128, 191, 197, 257, 270
MroXI	GAANNNNTTC	1 cut(s)	293
MvnI	CGCG	1 cut(s)	233
NcoI	CCATGG	2 cut(s)	144, 253
NdeII	GATC	4 cut(s)	31, 133, 313, 403
NlaIII	CATG	2 cut(s)	148, 257
NmuCI	GTSAC	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	92, 224
PkrI	GCNGC	3 cut(s)	172, 214, 235
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	2 cut(s)	389, 423
PpsI	GAGTC	2 cut(s)	389, 423
PspPI	GGNCC	4 cut(s)	148, 199, 235, 257
PsuI	RGATCY	1 cut(s)	31
PvuI	CGATCG	1 cut(s)	316
SatI	GCNGC	3 cut(s)	171, 213, 234
Sau3AI	GATC	4 cut(s)	31, 133, 313, 403
Sau96I	GGNCC	4 cut(s)	148, 199, 235, 257
SchI	GAGTC	2 cut(s)	390, 424
SetI	ASST	8 cut(s)	45, 54, 111, 165, 303, 333, 339, 379
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	2 cut(s)	148, 199
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	5 cut(s)	151, 171, 202, 213, 233
SspMI	CTAG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	144, 253
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	4 cut(s)	36, 54, 222, 276
TasI	AATT	1 cut(s)	284
TauI	GCSGC	3 cut(s)	173, 215, 236
TfiI	GAWTC	2 cut(s)	92, 224
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	232, 398
VpaK11BI	GGWCC	2 cut(s)	148, 199
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.