RLG00000029817

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013728
Physical Location & Seq
Reverse (-)
49693878 .. 49694521
644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029817

Sequence Viewer

Length: 513 bp
ATGGACCGCTTCTCCGACGAGCTCACTGCCAAGTCCCTCTCCCTCTCCAATCTGGTTCGCCCCATCGCCGCCGCCATGGATTCGCCCCACCCATTTCACCCTCTCCGCCTCCCAGTTCTACCTCTCTCTCCTCCTCTCCCCCAATTCCCCAGTCTGTACTCTCTTCACTCCCATGGCGTTTTTCTCTCTCCTCTAATTGATTTGCCGATCACAGAAGCGTCGCCGCTCCAAATCGGGTCACAAGGGATTGAAGAACAATCAGGATTGCGAAAGGTTTTGCTTAAGGTATCCAAGCCTAAGGTTAGAGACCTTGCCAACATTGCAGCTGAGGTGTTCAAGTCATTAGCACCAATGATTCTTCAGCCTCGCCTCAAGATGGTTCACCGTCTTGATGCTCCGGTTGCGGATAAGTCCCTGGAGATTTTCAAAGGAGAGCTCGAGCCACTGGGCCAAATCGTTGGATGCCCTATATGTGAAGATGAGGTAGGCGATGACGGCGGGGACTTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

171

Amino Acids

18.44

Weight (kDa)

5.49

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 7 cut(s) 7, 69, 72, 106, 224, 404, 498
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 376
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 3 cut(s) 251, 337, 427
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 3 cut(s) 22, 326, 436
AluI AGCT 3 cut(s) 22, 326, 436
Alw21I GWGCWC 2 cut(s) 24, 438
Alw26I GTCTC 1 cut(s) 300
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 4, 448
AsuHPI GGTGA 2 cut(s) 89, 374
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 297
BanII GRGCYC 2 cut(s) 24, 438
Bbv12I GWGCWC 2 cut(s) 24, 438
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 335
BccI CCATC 2 cut(s) 71, 370
BceAI ACGGC 1 cut(s) 511
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 416
BciVI GTATCC 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 4 cut(s) 69, 72, 224, 324
BlsI GCNGC 4 cut(s) 70, 73, 225, 325
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 4, 448
BmrFI CCNGG 1 cut(s) 416
BmrI ACTGGG 3 cut(s) 107, 144, 455
BmsI GCATC 2 cut(s) 382, 452
BmuI ACTGGG 3 cut(s) 107, 144, 455
BpmI CTGGAG 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 75, 172, 414
BsaWI WCCGGW 1 cut(s) 397
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 3 cut(s) 113, 150, 450
Bse21I CCTNAGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 3 cut(s) 75, 172, 414
BseGI GGATG 1 cut(s) 467
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 3 cut(s) 113, 150, 450
BseRI GAGGAG 3 cut(s) 120, 123, 180
BseXI GCAGC 1 cut(s) 335
BshFI GGCC 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 24, 438
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 2 cut(s) 19, 397
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 2 cut(s) 19, 397
BsnI GGCC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 300
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 24, 438
Bsp143I GATC 1 cut(s) 207
Bsp19I CCATGG 2 cut(s) 75, 172
BspACI CCGC 7 cut(s) 7, 69, 72, 106, 224, 404, 498
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 3 cut(s) 113, 150, 450
BssECI CCNNGG 3 cut(s) 75, 172, 414
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 75, 172
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 297, 327
BstDSI CCRYGG 2 cut(s) 75, 172
BstF5I GGATG 1 cut(s) 467
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 3 cut(s) 320, 401, 495
BstNI CCWGG 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 414
BstV1I GCAGC 1 cut(s) 335
BstXI CCANNNNNNTGG 1 cut(s) 458
Bsu36I CCTNAGG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 2 cut(s) 75, 172
BtgZI GCGATG 2 cut(s) 49, 504
BtsCI GGATG 1 cut(s) 467
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 443
Cfr13I GGNCC 2 cut(s) 4, 448
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 76, 173
CviJI RGCY 7 cut(s) 22, 295, 326, 364, 436, 442, 450
CviKI_1 RGCY 7 cut(s) 22, 295, 326, 364, 436, 442, 450
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 297, 327
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 95
Ecl136II GAGCTC 2 cut(s) 22, 436
Eco130I CCWWGG 2 cut(s) 75, 172
Eco24I GRGCYC 2 cut(s) 24, 438
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 22, 436
Eco57I CTGAAG 1 cut(s) 344
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 437
EcoICRI GAGCTC 2 cut(s) 22, 436
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 2 cut(s) 75, 172
EcoT38I GRGCYC 2 cut(s) 24, 438
ErhI CCWWGG 2 cut(s) 75, 172
FaeI CATG 2 cut(s) 79, 176
FaiI YATR 4 cut(s) 77, 174, 470, 472
FaqI GGGAC 2 cut(s) 19, 397
FatI CATG 2 cut(s) 75, 172
FauI CCCGC 1 cut(s) 491
Fnu4HI GCNGC 4 cut(s) 69, 72, 224, 324
FokI GGATG 1 cut(s) 474
FriOI GRGCYC 2 cut(s) 24, 438
Fsp4HI GCNGC 4 cut(s) 69, 72, 224, 324
GluI GCNGC 4 cut(s) 69, 72, 224, 324
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 207
Hin1II CATG 2 cut(s) 79, 176
HinfI GANTC 2 cut(s) 80, 355
HpaII CCGG 1 cut(s) 398
HphI GGTGA 2 cut(s) 89, 374
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 261, 373, 389
Hpy8I GTNNAC 1 cut(s) 382
Hpy99I CGWCG 2 cut(s) 20, 223
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 401, 495
HpyF3I CTNAG 2 cut(s) 297, 327
Hsp92II CATG 2 cut(s) 79, 176
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 231, 400
LpnPI CCDG 8 cut(s) 38, 126, 163, 246, 401, 411, 428, 431
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 2 cut(s) 382, 452
MaeIII GTNAC 1 cut(s) 237
MalI GATC 1 cut(s) 209
MbiI CCGCTC 1 cut(s) 226
MboI GATC 1 cut(s) 207
MboII GAAGA 4 cut(s) 155, 263, 350, 488
MhlI GDGCHC 2 cut(s) 24, 438
MluCI AATT 2 cut(s) 143, 195
MmeI TCCRAC 2 cut(s) 39, 439
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 326
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 3 cut(s) 320, 401, 495
NcoI CCATGG 2 cut(s) 75, 172
NdeII GATC 1 cut(s) 207
NlaIII CATG 2 cut(s) 79, 176
NmuCI GTSAC 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 437
PfeI GAWTC 2 cut(s) 80, 355
PkrI GCNGC 4 cut(s) 70, 73, 225, 325
Psp124BI GAGCTC 2 cut(s) 24, 438
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspPI GGNCC 2 cut(s) 4, 448
PspXI VCTCGAGB 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 2 cut(s) 24, 438
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 4 cut(s) 69, 72, 224, 324
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 2 cut(s) 4, 448
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 2 cut(s) 24, 438
SfaNI GCATC 2 cut(s) 382, 452
Sfr274I CTCGAG 1 cut(s) 437
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 3 cut(s) 281, 371, 437
SmoI CTYRAG 3 cut(s) 281, 371, 437
Sse9I AATT 2 cut(s) 143, 195
SsiI CCGC 7 cut(s) 7, 69, 72, 106, 224, 404, 498
SstI GAGCTC 2 cut(s) 24, 438
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 2 cut(s) 75, 172
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 438
TasI AATT 2 cut(s) 143, 195
TatI WGTACW 1 cut(s) 156
TauI GCSGC 3 cut(s) 71, 74, 226
TfiI GAWTC 2 cut(s) 80, 355
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 31, 450
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 237
TspRI CASTG 2 cut(s) 31, 450
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 4
XhoI CTCGAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.