Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005525

Physical Location & Seq

Genomic Coordinates Reverse (-)

6258564 .. 6262920

Gene Structure 4357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1089800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTCTCTCTCTCGCACCATCACACAGCTTTGCTCTCCGCAAGTGTTGCCATTGTCGTCGGTACTAGCAATTCCTCCCCACGTTCTTCAAAACTTTAACCCCACAGCTCCTTTTCCATTTCTTCCCCACCTCTCTCTCTCTCTCTCCTCTCTCTCTCCCTCTCCCTACAAAACCTTCATCTTCGACGTTTCTGCTAATCAGTTCATGTTATTTCTAATATCAGGGACAGTGTGGACTGCTTGTGCGCACATAATCACAACATCAGTTGGTGCTGGAGTGCTCTCTCTGGCATGGGCAATGGCTCAACTTGGCTGGCTTGGTGGCATTTCCATTCTCTTGTTTTGCACATTTGGTGCACTTTATGCTGCCACTCTCTTAGCAGATTGCTACAGATTTCCAGACCCAGTCACTGGCAAGAGAAATTACTCTTACATGGAGGCTGTCAAAGCCTATTTAGGTGGAACAATTTACAAGTTCTGTGGATGGATGATATATTTAAATCTTGCTACCATTGGAGTTGGCTTTACAATAACTACGAAACCGAATTGCCATCGCAAAAATGGTGGTGATGACCCATGCAAGTTCTCCAACATTCCTCATGTGATTGGATTTGGAATTGTAGAAATTTTCTTATCACAACTCCCAAACTTTCACAAGCTCTCTGGGCTCTCAAAGGTTGCAGCAATTATGTCTTTTGGGTATGCCTTTATCGGAATTGGACTTTCCATGACAAAAATCATATCGGGGCATGGAGGAAAAACCTCTCTTGCAGGAGTGGACCTGCCTTTATCTGAAAAAAATTGGAGGATGTTTGCAGCAGCTGGAGACATGGCCTTTGCTTGCTCATATGCCCTAGTACTTTTGGATATCCAAGTACTTTGCCAACCAGTGTTTCGAGTTATTGAACTATTGGCTAGAAGGAGGTGGCCCAAGTCCAAGTTCATAAACAGGGAGATCCCAATCAGACTTGGGAAGGTAAAGTTGAACATGAACATGTTTAGGCTGTCATGGAGGACAGCCTATGGAGTGTTGGTCTCATTTCTTGCCATAGCTCTGCCATTCTTCTCCGACATGCTGGGCCTTCTTGGAGCCCTAGGTTACTGGCCACTCATAGTTTACATTCCAGTGGAGATGCACATTGTGCAAAACAAGATTGCAAAAGGTACAATTAGATGGTTTGAGCTCCAATTGCTGAGCCTTTTGTGCTTGATTCTTTCTTTGGCTGCAGCATCTGGTGCCATTCATGGTCTGTATAAGGGTCTCAAAGCCTACAAGGCCTTCCAAATTAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

432

Amino Acids

47.36

Weight (kDa)

9.57

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	75 - 291	2.8e-45	Transmembrane amino acid transporter protein
Aa_trans	PF01490	285 - 417	8.4e-19	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35270 FvH4_2g35270 FvH4_2g35270 FvH4_2g35270
malus_domestica	MD08G1110600.v1.1 MD15G1089800.v1.1
prunus_persica	Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306641 RchiOBHm_Chr6g0306671
rosa_laevigata	RLG00000010775 RLG00000010777
rosa_multiflora	Rmu_sc0005201.1_g000004 Rmu_sc0005201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161560 Rroxscaffold_7G00161580
rosa_rugosa	Rorug06G0351500
rosa_samantha	Rh6AG463600 Rh6AG463800 Rh6BG437200 Rh6BG437300 Rh6CG477900 Rh6DG464600 Rh6DG464700
rosa_wichuraiana	Rw6G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	246
Acc36I	ACCTGC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	1235
AccB7I	CCANNNNNTGG	1 cut(s)	410
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	949
AcoI	YGGCCR	1 cut(s)	1103
AcsI	RAATTY	1 cut(s)	624
AdeI	CACNNNGTG	1 cut(s)	1141
AfaI	GTAC	4 cut(s)	63, 858, 876, 1165
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	993
AgsI	TTSAA	3 cut(s)	89, 905, 985
AjuI	GAANNNNNNNTTGG	4 cut(s)	876, 908, 923, 955
AluBI	AGCT	6 cut(s)	28, 107, 658, 821, 1052, 1183
AluI	AGCT	6 cut(s)	28, 107, 658, 821, 1052, 1183
Alw21I	GWGCWC	3 cut(s)	282, 358, 1185
Alw26I	GTCTC	4 cut(s)	9, 819, 1039, 1265
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	949
AlwNI	CAGNNNCTG	3 cut(s)	410, 821, 1232
AoxI	GGCC	5 cut(s)	831, 926, 1078, 1103, 1275
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	6 cut(s)	365, 680, 815, 818, 1223, 1226
ApoI	RAATTY	1 cut(s)	624
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
AspA2I	CCTAGG	1 cut(s)	1093
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	778, 927, 1078
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	778
AvrII	CCTAGG	1 cut(s)	1093
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	1105
BanI	GGYRCC	1 cut(s)	1235
BanII	GRGCYC	3 cut(s)	669, 1093, 1185
Bbv12I	GWGCWC	3 cut(s)	282, 358, 1185
BbvI	GCAGC	6 cut(s)	352, 692, 827, 830, 1210, 1238
BccI	CCATC	4 cut(s)	26, 477, 558, 1167
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BcoDI	GTCTC	4 cut(s)	9, 819, 1039, 1265
BfaI	CTAG	4 cut(s)	65, 854, 915, 1094
BfmI	CTRYAG	2 cut(s)	388, 1224
BfuAI	ACCTGC	1 cut(s)	789
BglI	GCCNNNNNGGC	1 cut(s)	1274
BisI	GCNGC	6 cut(s)	366, 681, 816, 819, 1224, 1227
BlnI	CCTAGG	1 cut(s)	1093
BlpI	GCTNAGC	1 cut(s)	1193
BlsI	GCNGC	6 cut(s)	367, 682, 817, 820, 1225, 1228
BmcAI	AGTACT	2 cut(s)	858, 876
Bme18I	GGWCC	1 cut(s)	778
BmgT120I	GGNCC	3 cut(s)	778, 927, 1078
BmiI	GGNNCC	2 cut(s)	1090, 1237
BmrI	ACTGGG	1 cut(s)	398
BmsI	GCATC	2 cut(s)	1122, 1238
BmuI	ACTGGG	1 cut(s)	398
BpmI	CTGGAG	2 cut(s)	294, 843
Bpu1102I	GCTNAGC	1 cut(s)	1193
BsaBI	GATNNNNATC	1 cut(s)	959
BsaI	GGTCTC	2 cut(s)	1039, 1265
BsaJI	CCNNGG	1 cut(s)	1093
BsaXI	ACNNNNNCTCC	2 cut(s)	1017, 1047
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	5 cut(s)	404, 415, 887, 1106, 1124
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	959
BseDI	CCNNGG	1 cut(s)	1093
BseGI	GGATG	3 cut(s)	488, 492, 813
BseJI	GATNNNNATC	1 cut(s)	959
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	1184
BseNI	ACTGG	5 cut(s)	404, 415, 887, 1106, 1124
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	6 cut(s)	352, 692, 827, 830, 1210, 1238
BseYI	CCCAGC	1 cut(s)	1075
BshFI	GGCC	5 cut(s)	833, 928, 1080, 1105, 1277
BshNI	GGYRCC	1 cut(s)	1235
BsiHKAI	GWGCWC	3 cut(s)	282, 358, 1185
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	4 cut(s)	9, 819, 1039, 1265
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	5 cut(s)	833, 928, 1080, 1105, 1277
Bso31I	GGTCTC	2 cut(s)	1039, 1265
Bsp1286I	GDGCHC	5 cut(s)	282, 358, 669, 1093, 1185
Bsp143I	GATC	1 cut(s)	954
Bsp1720I	GCTNAGC	1 cut(s)	1193
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	5 cut(s)	833, 928, 1080, 1105, 1277
BspCNI	CTCAG	1 cut(s)	1185
BspLI	GGNNCC	2 cut(s)	1090, 1237
BspMAI	CTGCAG	1 cut(s)	1228
BspMI	ACCTGC	1 cut(s)	789
BspPI	GGATC	1 cut(s)	949
BspT107I	GGYRCC	1 cut(s)	1235
BspTNI	GGTCTC	2 cut(s)	1039, 1265
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	5 cut(s)	404, 415, 887, 1106, 1124
BssECI	CCNNGG	1 cut(s)	1093
BssMI	GATC	1 cut(s)	954
BssT1I	CCWWGG	1 cut(s)	1093
Bst4CI	ACNGT	1 cut(s)	229
BstAPI	GCANNNNNTGC	4 cut(s)	46, 362, 1141, 1235
BstC8I	GCNNGC	2 cut(s)	314, 841
BstDEI	CTNAG	2 cut(s)	376, 1193
BstF5I	GGATG	3 cut(s)	488, 492, 813
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	957
BstMAI	GTCTC	4 cut(s)	9, 819, 1039, 1265
BstMBI	GATC	1 cut(s)	954
BstMWI	GCNNNNNNNGC	9 cut(s)	46, 362, 446, 664, 1141, 1189, 1203, 1235, 1274
BstNSI	RCATGY	2 cut(s)	997, 1075
BstSFI	CTRYAG	2 cut(s)	388, 1224
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	6 cut(s)	352, 692, 827, 830, 1210, 1238
BstX2I	RGATCY	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	954
BsuRI	GGCC	5 cut(s)	833, 928, 1080, 1105, 1277
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	488, 492, 813
BtsIMutI	CAGTG	4 cut(s)	234, 408, 894, 1131
BveI	ACCTGC	1 cut(s)	789
Cac8I	GCNNGC	2 cut(s)	314, 841
CaiI	CAGNNNCTG	3 cut(s)	410, 821, 1232
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	778, 927, 1078
Csp6I	GTAC	4 cut(s)	62, 857, 875, 1164
CspCI	CAANNNNNGTGG	4 cut(s)	460, 495, 544, 579
CviQI	GTAC	4 cut(s)	62, 857, 875, 1164
DdeI	CTNAG	2 cut(s)	376, 1193
DpnI	GATC	1 cut(s)	956
DpnII	GATC	1 cut(s)	954
DraI	TTTAAA	1 cut(s)	498
DraIII	CACNNNGTG	1 cut(s)	1141
EaeI	YGGCCR	1 cut(s)	1103
Ecl136II	GAGCTC	1 cut(s)	1183
Eco130I	CCWWGG	1 cut(s)	1093
Eco147I	AGGCCT	1 cut(s)	1277
Eco24I	GRGCYC	3 cut(s)	669, 1093, 1185
Eco31I	GGTCTC	2 cut(s)	1039, 1265
Eco32I	GATATC	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	778
Eco53kI	GAGCTC	1 cut(s)	1183
EcoICRI	GAGCTC	1 cut(s)	1183
EcoRV	GATATC	1 cut(s)	868
EcoT14I	CCWWGG	1 cut(s)	1093
EcoT38I	GRGCYC	3 cut(s)	669, 1093, 1185
ErhI	CCWWGG	1 cut(s)	1093
FaqI	GGGAC	1 cut(s)	238
FauNDI	CATATG	1 cut(s)	847
Fnu4HI	GCNGC	6 cut(s)	366, 681, 816, 819, 1224, 1227
FokI	GGATG	3 cut(s)	495, 499, 820
FriOI	GRGCYC	3 cut(s)	669, 1093, 1185
Fsp4HI	GCNGC	6 cut(s)	366, 681, 816, 819, 1224, 1227
FspAI	RTGCGCAY	1 cut(s)	246
FspBI	CTAG	4 cut(s)	65, 854, 915, 1094
FspI	TGCGCA	1 cut(s)	246
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	6 cut(s)	366, 681, 816, 819, 1224, 1227
GsaI	CCCAGC	1 cut(s)	1079
GsuI	CTGGAG	2 cut(s)	294, 843
HaeIII	GGCC	5 cut(s)	833, 928, 1080, 1105, 1277
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	1210
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	4 cut(s)	234, 356, 778, 1117
Hpy188I	TCNGA	4 cut(s)	713, 793, 965, 1069
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	4 cut(s)	234, 356, 778, 1117
Hpy99I	CGWCG	2 cut(s)	61, 188
HpyAV	CCTTC	5 cut(s)	184, 912, 967, 1091, 1288
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	81, 186
HpyF10VI	GCNNNNNNNGC	9 cut(s)	46, 362, 446, 664, 1141, 1189, 1203, 1235, 1274
HpyF3I	CTNAG	2 cut(s)	376, 1193
HpySE526I	ACGT	2 cut(s)	81, 186
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	954
LmnI	GCTCC	3 cut(s)	112, 1088, 1188
Lsp1109I	GCAGC	6 cut(s)	352, 692, 827, 830, 1210, 1238
LweI	GCATC	2 cut(s)	1122, 1238
MaeI	CTAG	4 cut(s)	65, 854, 915, 1094
MaeII	ACGT	2 cut(s)	81, 186
MaeIII	GTNAC	2 cut(s)	406, 1097
MalI	GATC	1 cut(s)	956
MboI	GATC	1 cut(s)	954
MboII	GAAGA	4 cut(s)	77, 113, 172, 1054
MfeI	CAATTG	1 cut(s)	1187
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	5 cut(s)	282, 358, 669, 1093, 1185
MlsI	TGGCCA	1 cut(s)	1105
MluNI	TGGCCA	1 cut(s)	1105
MmeI	TCCRAC	2 cut(s)	612, 1092
Mox20I	TGGCCA	1 cut(s)	1105
MscI	TGGCCA	1 cut(s)	1105
MseI	TTAA	3 cut(s)	96, 497, 1287
MslI	CAYNNNNRTG	2 cut(s)	992, 1124
Msp20I	TGGCCA	1 cut(s)	1105
MspA1I	CMGCKG	1 cut(s)	821
MunI	CAATTG	1 cut(s)	1187
MwoI	GCNNNNNNNGC	9 cut(s)	46, 362, 446, 664, 1141, 1189, 1203, 1235, 1274
NdeI	CATATG	1 cut(s)	847
NdeII	GATC	1 cut(s)	954
NlaIV	GGNNCC	2 cut(s)	1090, 1237
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	246
NspI	RCATGY	2 cut(s)	997, 1075
PceI	AGGCCT	1 cut(s)	1277
PciI	ACATGT	1 cut(s)	993
PfeI	GAWTC	1 cut(s)	1210
PflFI	GACNNNGTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	6 cut(s)	367, 682, 817, 820, 1225, 1228
PscI	ACATGT	1 cut(s)	993
Psp124BI	GAGCTC	1 cut(s)	1185
PspFI	CCCAGC	1 cut(s)	1075
PspN4I	GGNNCC	2 cut(s)	1090, 1237
PspPI	GGNCC	3 cut(s)	778, 927, 1078
PstI	CTGCAG	1 cut(s)	1228
PstNI	CAGNNNCTG	3 cut(s)	410, 821, 1232
PsuI	RGATCY	1 cut(s)	954
PsyI	GACNNNGTC	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	4 cut(s)	63, 858, 876, 1165
RsaNI	GTAC	4 cut(s)	62, 857, 875, 1164
RseI	CAYNNNNRTG	2 cut(s)	992, 1124
SacI	GAGCTC	1 cut(s)	1185
SaqAI	TTAA	3 cut(s)	96, 497, 1287
SatI	GCNGC	6 cut(s)	366, 681, 816, 819, 1224, 1227
Sau3AI	GATC	1 cut(s)	954
Sau96I	GGNCC	3 cut(s)	778, 927, 1078
ScaI	AGTACT	2 cut(s)	858, 876
SduI	GDGCHC	5 cut(s)	282, 358, 669, 1093, 1185
SfaNI	GCATC	2 cut(s)	1122, 1238
SfcI	CTRYAG	2 cut(s)	388, 1224
SinI	GGWCC	1 cut(s)	778
SmiI	ATTTAAAT	1 cut(s)	498
SmiMI	CAYNNNNRTG	2 cut(s)	992, 1124
SseBI	AGGCCT	1 cut(s)	1277
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	4 cut(s)	65, 854, 915, 1094
SstI	GAGCTC	1 cut(s)	1185
StuI	AGGCCT	1 cut(s)	1277
StyI	CCWWGG	1 cut(s)	1093
SwaI	ATTTAAAT	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	84, 189
TaqI	TCGA	2 cut(s)	183, 895
TatI	WGTACW	2 cut(s)	856, 874
TfiI	GAWTC	1 cut(s)	1210
Tru1I	TTAA	3 cut(s)	96, 497, 1287
Tru9I	TTAA	3 cut(s)	96, 497, 1287
TscAI	CASTG	4 cut(s)	234, 415, 894, 1131
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	6 cut(s)	365, 680, 815, 818, 1223, 1226
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	166, 193, 931, 1004, 1232
TspRI	CASTG	4 cut(s)	234, 415, 894, 1131
Tth111I	GACNNNGTC	1 cut(s)	404
Van91I	CCANNNNNTGG	1 cut(s)	410
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	1 cut(s)	624
XceI	RCATGY	2 cut(s)	997, 1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XmaJI	CCTAGG	1 cut(s)	1093
XspI	CTAG	4 cut(s)	65, 854, 915, 1094
ZrmI	AGTACT	2 cut(s)	858, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.