RLG00000010775

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005525
Physical Location & Seq
Reverse (-)
4256222 .. 4256545
324 bp
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UTR
Exon/CDS
Intron
RLM00000010775

Sequence Viewer

Length: 324 bp
ATGAAGTTCGATATAAACACGATTAGGCTGACATGGAGAACAACCTTTGTGGTGTTGGCGACTTTCATTGCCATGGCAATGCCATTCTTCACAGACATGCTTGCGCTTCTTGGAGCTATCGGGTACTGGCCTCTTATAGTTTATGTCCCAATAGAGATGCAAATTGTGCAAAACATGATTCAGAAACAAACCCTACGCTGGTTCGGGCTCCAACTGATCCTGAGCTTTTTGTGCTTGCTTCTTTCCTTGGCTGCGGCATCTGGTTCCATTTATGGTCTGCATAAGGGTCTCGGTGCGTACAAGCTCTTCCAAGTTAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

108

Amino Acids

12.18

Weight (kDa)

9.52

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 6 - 93 2.4e-15 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 211
AfaI GTAC 2 cut(s) 125, 299
AfiI CCNNNNNNNGG 1 cut(s) 198
AluBI AGCT 3 cut(s) 116, 225, 304
AluI AGCT 3 cut(s) 116, 225, 304
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 211
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BbvI GCAGC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 293
BisI GCNGC 2 cut(s) 252, 255
BlsI GCNGC 2 cut(s) 253, 256
BmiI GGNNCC 2 cut(s) 209, 265
BmsI GCATC 2 cut(s) 147, 266
Bpu10I CCTNAGC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 72, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 2 cut(s) 66, 84
BseDI CCNNGG 2 cut(s) 72, 246
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 2 cut(s) 66, 84
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 130
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 130
Bso31I GGTCTC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 209, 265
BspPI GGATC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 2 cut(s) 66, 84
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 72, 246
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 72, 246
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 102, 236
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 166, 231
BstNSI RCATGY 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 102, 236
CfoI GCGC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 124, 298
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 4 cut(s) 33, 73, 97, 175
CviJI RGCY 7 cut(s) 28, 116, 130, 208, 225, 251, 304
CviKI_1 RGCY 7 cut(s) 28, 116, 130, 208, 225, 251, 304
CviQI GTAC 2 cut(s) 124, 298
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 72, 246
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 293
EcoT14I CCWWGG 2 cut(s) 72, 246
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 2 cut(s) 72, 246
FaeI CATG 4 cut(s) 36, 76, 100, 178
FaiI YATR 9 cut(s) 14, 34, 74, 98, 137, 144, 176, 273, 282
FaqI GGGAC 1 cut(s) 131
FatI CATG 4 cut(s) 32, 72, 96, 174
Fnu4HI GCNGC 2 cut(s) 252, 255
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 252, 255
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 252, 255
HaeIII GGCC 1 cut(s) 130
HhaI GCGC 1 cut(s) 106
Hin1II CATG 4 cut(s) 36, 76, 100, 178
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 220
HpyCH4V TGCA 3 cut(s) 160, 169, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 231
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 4 cut(s) 36, 76, 100, 178
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 216
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 2 cut(s) 113, 213
LpnPI CCDG 4 cut(s) 112, 184, 233, 246
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 147, 266
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 2 cut(s) 79, 298
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 1 cut(s) 141
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 3 cut(s) 71, 77, 95
MwoI GCNNNNNNNGC 2 cut(s) 166, 231
NcoI CCATGG 1 cut(s) 72
NdeII GATC 1 cut(s) 216
NlaIII CATG 4 cut(s) 36, 76, 100, 178
NlaIV GGNNCC 2 cut(s) 209, 265
NspI RCATGY 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 253, 256
PspN4I GGNNCC 2 cut(s) 209, 265
RsaI GTAC 2 cut(s) 125, 299
RsaNI GTAC 2 cut(s) 124, 298
RseI CAYNNNNRTG 3 cut(s) 71, 77, 95
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 252, 255
Sau3AI GATC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 210
SetI ASST 4 cut(s) 47, 118, 227, 306
SfaNI GCATC 2 cut(s) 147, 266
SmiMI CAYNNNNRTG 3 cut(s) 71, 77, 95
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 254
StyI CCWWGG 2 cut(s) 72, 246
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 162
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 17, 55
XceI RCATGY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.