RLG00000010777

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005525
Physical Location & Seq
Reverse (-)
4281833 .. 4284663
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010777

Sequence Viewer

Length: 1455 bp
ATGGCATTGAGTGAGGTTGAATTTCAACATGACTTATCTGAATCCGGTTTGACCAATCCGGCGAAGTACGGGGAAGCTGGTGAAGAACTAGAGGTGGATGATGATGGCAAACTCAAAAGGACTGGAACAGTATGGACTGCCTGTGCCCATATAATCACAGCATCAATAGGAGCTGGAGTGCTATCTTTAGCCTGGGCAATGGCCCAGCTCGGATGGCTTGCCGGCATTTTCATTCTCTTGTTCTGCACCTTCGCTGCTGGCTACGCTTCCACTCTCTTAGCAGATTGTTACAGATTTCCGGACCCCGTGTCAGGCAAGAGAAACTACTCCTATATGGAGGCTGTCAAAGTCTATTTAGGTGGAACAATGCACAAGATTTGTGGATGGATGTTATATTTAAACCTTGCTACCATTGGAGTTGGCTTCACTATAACCACCGCAAAAAGCTTGGTGGCTATACAGAAGTCGAGTTGTCATCGCAAAAATGGTGAAGATTCTCCATGCATGTTTTCCAACATTCCACATATGGTTGGATTTGGGCTTGTTGAAATTCTCTTATCACAACTCCAAAACTTTCACAAATTGACTACGCTCTCTAAGCTAGCAGCCATGATGTCATTTGTCTATGCAACTATTGGAATTGGACTGTCTCTAGCTAAGATCATATCAGGGGATGGAGAAGCAACATATCTTGCTGGGGCGGACCAGTCGTCATCGGAAAAAATTTGGATGATGTTTATAGCAGCCGGAGATATTGCATTTGCTTGCTCGTATTCTCTTATCCTGTTTGATATCCAAGACACACTGAAGTCATCGCCACCAGAGAACAAAGTGATGAAGAGGGCTGTCGTTATAGGAGGTTTGACTATGGCATTACTCTTCATGATGTGTGGTAGCTTGGGTTATGCCGCGTTTGGCAACATCACACCCGAAAACCTGCTTGCTGGTTTTGGAGATGAGATGCCCTGGGCATTCTGGCTCCTGGATTTGGCTAATTTTTGCATTGTGGTGCACATAGTTGGTGCATTTCAGGTACTGTGCCAACCAGTGTTTCGCATTGTCGAACTGTTGGCTAGAAGAAGGTGGCCAAAATCCAATTTCATTACCAAAGAGAGCCCGGTCATACTAGGGAAGATGAAGTTCAATATAAACATGTTTAGGGCGACATGGAGAACATCCTTTGTGGTGTTGGTGACTGTCATTGCCATGGCAATGCCATTCTTCACAGATATGCTGGCGCTTCTCGGAGCTATCGGGTACTGGCCTCTTATAGTTTATGTCCCAATAGAGATGCACATTGTGCAAAACAAGATTCAGAAACAAACCCTTCGCTGGTTCGGGCTCCAACTCCTGAGCTTTTTGTGCTTGCTTCTTTCCTTGGCCGCGGCATCTGGTTCCATTTATGGTCTGCATAAGGGTCTCGGTGCGTACAAGCTCTTCCAAGTTAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

485

Amino Acids

53.13

Weight (kDa)

8.2

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 40 - 470 1.2e-99 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 945
AccII CGCG 2 cut(s) 911, 1385
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 5 cut(s) 438, 701, 909, 1383, 1385
AcoI YGGCCR 2 cut(s) 1085, 1380
AcsI RAATTY 3 cut(s) 20, 549, 723
AcuI CTGAAG 1 cut(s) 827
AdeI CACNNNGTG 1 cut(s) 1300
AfaI GTAC 4 cut(s) 68, 1035, 1259, 1430
AfiI CCNNNNNNNGG 3 cut(s) 311, 988, 1332
AflIII ACRYGT 1 cut(s) 1152
AgsI TTSAA 4 cut(s) 20, 26, 548, 1144
AhdI GACNNNNNGTC 2 cut(s) 307, 709
AjnI CCWGG 3 cut(s) 191, 965, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 2 cut(s) 654, 1424
Alw44I GTGCAC 1 cut(s) 1010
AlwNI CAGNNNCTG 1 cut(s) 1036
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 4 cut(s) 201, 1085, 1262, 1380
ApaLI GTGCAC 1 cut(s) 1010
ApeKI GCWGC 3 cut(s) 254, 605, 743
ApoI RAATTY 3 cut(s) 20, 549, 723
AspLEI GCGC 1 cut(s) 1240
AspS9I GGNCC 3 cut(s) 202, 301, 703
AsuC2I CCSGG 1 cut(s) 1118
AsuHPI GGTGA 3 cut(s) 92, 500, 1204
AsuNHI GCTAGC 1 cut(s) 601
AvaII GGWCC 2 cut(s) 301, 703
BaeGI GKGCMC 2 cut(s) 148, 1014
BalI TGGCCA 1 cut(s) 1087
BanII GRGCYC 2 cut(s) 1118, 1344
BarI GAAGNNNNNNTAC 2 cut(s) 1421, 1453
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 3 cut(s) 241, 617, 755
BccI CCATC 4 cut(s) 98, 207, 378, 668
BciT130I CCWGG 3 cut(s) 193, 967, 983
BcnI CCSGG 1 cut(s) 1118
BcoDI GTCTC 2 cut(s) 654, 1424
BfaI CTAG 5 cut(s) 89, 602, 653, 1074, 1127
BfoI RGCGCY 1 cut(s) 1241
BfuAI ACCTGC 1 cut(s) 945
BisI GCNGC 6 cut(s) 255, 606, 744, 909, 1383, 1386
BlsI GCNGC 6 cut(s) 256, 607, 745, 910, 1384, 1387
Bme1390I CCNGG 4 cut(s) 193, 967, 983, 1118
Bme18I GGWCC 2 cut(s) 301, 703
BmeRI GACNNNNNGTC 2 cut(s) 307, 709
BmgT120I GGNCC 3 cut(s) 202, 301, 703
BmiI GGNNCC 4 cut(s) 303, 980, 1343, 1396
BmrFI CCNGG 4 cut(s) 193, 967, 983, 1118
BmsI GCATC 4 cut(s) 170, 951, 1281, 1397
BmtI GCTAGC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 1352
BpuMI CCSGG 1 cut(s) 1118
BsaI GGTCTC 1 cut(s) 1424
BsaJI CCNNGG 6 cut(s) 192, 965, 966, 1206, 1377, 1383
BsaWI WCCGGW 2 cut(s) 44, 298
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 988, 1332
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 4 cut(s) 127, 706, 1046, 1265
Bse3DI GCAATG 3 cut(s) 204, 1200, 1218
BseAI TCCGGA 1 cut(s) 298
BseBI CCWGG 3 cut(s) 193, 967, 983
BseDI CCNNGG 6 cut(s) 192, 965, 966, 1206, 1377, 1383
BseGI GGATG 7 cut(s) 103, 218, 389, 393, 679, 735, 1175
BseLI CCNNNNNNNGG 3 cut(s) 311, 988, 1332
BseMI GCAATG 3 cut(s) 204, 1200, 1218
BseMII CTCAG 1 cut(s) 1343
BseNI ACTGG 4 cut(s) 127, 706, 1046, 1265
BseSI GKGCMC 2 cut(s) 148, 1014
BseXI GCAGC 3 cut(s) 241, 617, 755
BseYI CCCAGC 2 cut(s) 204, 695
BsgI GTGCAG 1 cut(s) 229
Bsh1236I CGCG 2 cut(s) 911, 1385
BshFI GGCC 4 cut(s) 203, 1087, 1264, 1382
BsiHKAI GWGCWC 1 cut(s) 1014
BsiSI CCGG 6 cut(s) 45, 59, 222, 299, 747, 1118
BslFI GGGAC 1 cut(s) 1265
BslI CCNNNNNNNGG 3 cut(s) 311, 988, 1332
BsmAI GTCTC 2 cut(s) 654, 1424
BsmFI GGGAC 1 cut(s) 1265
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 4 cut(s) 203, 1087, 1264, 1382
Bso31I GGTCTC 1 cut(s) 1424
Bsp1286I GDGCHC 4 cut(s) 148, 1014, 1118, 1344
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 1 cut(s) 660
Bsp19I CCATGG 1 cut(s) 1206
BspACI CCGC 5 cut(s) 438, 701, 909, 1383, 1385
BspANI GGCC 4 cut(s) 203, 1087, 1264, 1382
BspCNI CTCAG 1 cut(s) 1344
BspEI TCCGGA 1 cut(s) 298
BspFNI CGCG 2 cut(s) 911, 1385
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 4 cut(s) 303, 980, 1343, 1396
BspMI ACCTGC 1 cut(s) 945
BspOI GCTAGC 1 cut(s) 605
BspQI GCTCTTC 1 cut(s) 1442
BspTNI GGTCTC 1 cut(s) 1424
BsrDI GCAATG 3 cut(s) 204, 1200, 1218
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 4 cut(s) 127, 706, 1046, 1265
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 6 cut(s) 192, 965, 966, 1206, 1377, 1383
BssMI GATC 1 cut(s) 660
BssT1I CCWWGG 2 cut(s) 1206, 1377
Bst2UI CCWGG 3 cut(s) 193, 967, 983
Bst4CI ACNGT 5 cut(s) 130, 648, 1038, 1068, 1198
Bst6I CTCTTC 3 cut(s) 833, 884, 1442
BstAPI GCANNNNNTGC 1 cut(s) 1300
BstC8I GCNNGC 8 cut(s) 219, 223, 259, 603, 766, 942, 1236, 1367
BstDEI CTNAG 4 cut(s) 277, 597, 657, 1352
BstDSI CCRYGG 2 cut(s) 1206, 1383
BstF5I GGATG 7 cut(s) 103, 218, 389, 393, 679, 735, 1175
BstFNI CGCG 2 cut(s) 911, 1385
BstH2I RGCGCY 1 cut(s) 1241
BstHHI GCGC 1 cut(s) 1240
BstKTI GATC 1 cut(s) 663
BstMAI GTCTC 2 cut(s) 654, 1424
BstMBI GATC 1 cut(s) 660
BstMWI GCNNNNNNNGC 5 cut(s) 214, 263, 598, 1300, 1362
BstNI CCWGG 3 cut(s) 193, 967, 983
BstNSI RCATGY 2 cut(s) 508, 1156
BstSCI CCNGG 4 cut(s) 191, 965, 981, 1116
BstSLI GKGCMC 2 cut(s) 148, 1014
BstUI CGCG 2 cut(s) 911, 1385
BstV1I GCAGC 3 cut(s) 241, 617, 755
BsuRI GGCC 4 cut(s) 203, 1087, 1264, 1382
BtgI CCRYGG 2 cut(s) 1206, 1383
BtgZI GCGATG 2 cut(s) 461, 798
BtsCI GGATG 7 cut(s) 103, 218, 389, 393, 679, 735, 1175
BtsIMutI CAGTG 2 cut(s) 803, 1053
BveI ACCTGC 1 cut(s) 945
Cac8I GCNNGC 8 cut(s) 219, 223, 259, 603, 766, 942, 1236, 1367
CaiI CAGNNNCTG 1 cut(s) 1036
CciI TCATGA 1 cut(s) 882
CfoI GCGC 1 cut(s) 1240
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 3 cut(s) 202, 301, 703
Cfr42I CCGCGG 1 cut(s) 1386
Csp6I GTAC 4 cut(s) 67, 1034, 1258, 1429
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 8 cut(s) 29, 501, 505, 610, 883, 1153, 1167, 1207
CviQI GTAC 4 cut(s) 67, 1034, 1258, 1429
DdeI CTNAG 4 cut(s) 277, 597, 657, 1352
DpnI GATC 1 cut(s) 662
DpnII GATC 1 cut(s) 660
DraI TTTAAA 1 cut(s) 399
DraIII CACNNNGTG 1 cut(s) 1300
DriI GACNNNNNGTC 2 cut(s) 307, 709
EaeI YGGCCR 2 cut(s) 1085, 1380
Eam1104I CTCTTC 3 cut(s) 833, 884, 1442
Eam1105I GACNNNNNGTC 2 cut(s) 307, 709
EarI CTCTTC 3 cut(s) 833, 884, 1442
EciI GGCGGA 1 cut(s) 716
Eco130I CCWWGG 2 cut(s) 1206, 1377
Eco24I GRGCYC 2 cut(s) 1118, 1344
Eco31I GGTCTC 1 cut(s) 1424
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 301, 703
Eco57I CTGAAG 1 cut(s) 827
EcoRII CCWGG 3 cut(s) 191, 965, 981
EcoRV GATATC 1 cut(s) 793
EcoT14I CCWWGG 2 cut(s) 1206, 1377
EcoT22I ATGCAT 1 cut(s) 506
EcoT38I GRGCYC 2 cut(s) 1118, 1344
ErhI CCWWGG 2 cut(s) 1206, 1377
FaeI CATG 8 cut(s) 32, 504, 508, 613, 886, 1156, 1170, 1210
FaqI GGGAC 1 cut(s) 1265
FatI CATG 8 cut(s) 28, 500, 504, 609, 882, 1152, 1166, 1206
FauNDI CATATG 1 cut(s) 525
Fnu4HI GCNGC 6 cut(s) 255, 606, 744, 909, 1383, 1386
FokI GGATG 7 cut(s) 110, 225, 396, 400, 686, 742, 1162
FriOI GRGCYC 2 cut(s) 1118, 1344
Fsp4HI GCNGC 6 cut(s) 255, 606, 744, 909, 1383, 1386
FspBI CTAG 5 cut(s) 89, 602, 653, 1074, 1127
GlaI GCGC 1 cut(s) 1239
GluI GCNGC 6 cut(s) 255, 606, 744, 909, 1383, 1386
GsaI CCCAGC 2 cut(s) 208, 699
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 1241
HaeIII GGCC 4 cut(s) 203, 1087, 1264, 1382
HapII CCGG 6 cut(s) 45, 59, 222, 299, 747, 1118
HhaI GCGC 1 cut(s) 1240
Hin1II CATG 8 cut(s) 32, 504, 508, 613, 886, 1156, 1170, 1210
Hin6I GCGC 1 cut(s) 1238
HinP1I GCGC 1 cut(s) 1238
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 3 cut(s) 41, 494, 1312
HpaII CCGG 6 cut(s) 45, 59, 222, 299, 747, 1118
HphI GGTGA 3 cut(s) 92, 500, 1204
Hpy166II GTNNAC 1 cut(s) 1012
Hpy188I TCNGA 5 cut(s) 40, 212, 718, 1247, 1317
Hpy188III TCNNGA 3 cut(s) 299, 883, 1351
Hpy8I GTNNAC 1 cut(s) 1012
HpyAV CCTTC 3 cut(s) 259, 1074, 1337
HpyCH4III ACNGT 5 cut(s) 130, 648, 1038, 1068, 1198
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 263, 598, 1300, 1362
HpyF3I CTNAG 4 cut(s) 277, 597, 657, 1352
Hsp92II CATG 8 cut(s) 32, 504, 508, 613, 886, 1156, 1170, 1210
HspAI GCGC 1 cut(s) 1238
Kpn2I TCCGGA 1 cut(s) 298
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 1386
Kzo9I GATC 1 cut(s) 660
LguI GCTCTTC 1 cut(s) 1442
LmnI GCTCC 4 cut(s) 170, 984, 1247, 1347
Lsp1109I GCAGC 3 cut(s) 241, 617, 755
LweI GCATC 4 cut(s) 170, 951, 1281, 1397
MaeI CTAG 5 cut(s) 89, 602, 653, 1074, 1127
MaeIII GTNAC 2 cut(s) 287, 1192
MalI GATC 1 cut(s) 662
MboI GATC 1 cut(s) 660
MboII GAAGA 8 cut(s) 95, 503, 850, 871, 1089, 1144, 1213, 1429
MhlI GDGCHC 4 cut(s) 148, 1014, 1118, 1344
MlsI TGGCCA 1 cut(s) 1087
MluCI AATT 7 cut(s) 20, 549, 581, 639, 723, 994, 1096
MluNI TGGCCA 1 cut(s) 1087
MmeI TCCRAC 3 cut(s) 511, 537, 1369
MnlI CCTC 6 cut(s) 7, 85, 331, 834, 851, 1275
Mox20I TGGCCA 1 cut(s) 1087
Mph1103I ATGCAT 1 cut(s) 506
MroI TCCGGA 1 cut(s) 298
MroNI GCCGGC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 1087
MseI TTAA 2 cut(s) 398, 1446
MslI CAYNNNNRTG 4 cut(s) 1007, 1205, 1211, 1229
Msp20I TGGCCA 1 cut(s) 1087
MspA1I CMGCKG 1 cut(s) 1385
MspI CCGG 6 cut(s) 45, 59, 222, 299, 747, 1118
MspR9I CCNGG 4 cut(s) 193, 967, 983, 1118
Mva1269I GAATGC 1 cut(s) 971
MvaI CCWGG 3 cut(s) 193, 967, 983
MvnI CGCG 2 cut(s) 911, 1385
MwoI GCNNNNNNNGC 5 cut(s) 214, 263, 598, 1300, 1362
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 1118
NcoI CCATGG 1 cut(s) 1206
NdeI CATATG 1 cut(s) 525
NdeII GATC 1 cut(s) 660
NgoMIV GCCGGC 1 cut(s) 221
NheI GCTAGC 1 cut(s) 601
NlaIII CATG 8 cut(s) 32, 504, 508, 613, 886, 1156, 1170, 1210
NlaIV GGNNCC 4 cut(s) 303, 980, 1343, 1396
NmuCI GTSAC 1 cut(s) 1192
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 2 cut(s) 508, 1156
PagI TCATGA 1 cut(s) 882
PasI CCCWGGG 1 cut(s) 966
PciI ACATGT 1 cut(s) 1152
PciSI GCTCTTC 1 cut(s) 1442
PctI GAATGC 1 cut(s) 971
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 41, 494, 1312
PfoI TCCNGGA 1 cut(s) 981
PkrI GCNGC 6 cut(s) 256, 607, 745, 910, 1384, 1387
PscI ACATGT 1 cut(s) 1152
Psp6I CCWGG 3 cut(s) 191, 965, 981
PspFI CCCAGC 2 cut(s) 204, 695
PspGI CCWGG 3 cut(s) 191, 965, 981
PspN4I GGNNCC 4 cut(s) 303, 980, 1343, 1396
PspPI GGNCC 3 cut(s) 202, 301, 703
PstNI CAGNNNCTG 1 cut(s) 1036
RsaI GTAC 4 cut(s) 68, 1035, 1259, 1430
RsaNI GTAC 4 cut(s) 67, 1034, 1258, 1429
RseI CAYNNNNRTG 4 cut(s) 1007, 1205, 1211, 1229
SacII CCGCGG 1 cut(s) 1386
SapI GCTCTTC 1 cut(s) 1442
SaqAI TTAA 2 cut(s) 398, 1446
SatI GCNGC 6 cut(s) 255, 606, 744, 909, 1383, 1386
Sau3AI GATC 1 cut(s) 660
Sau96I GGNCC 3 cut(s) 202, 301, 703
ScrFI CCNGG 4 cut(s) 193, 967, 983, 1118
SduI GDGCHC 4 cut(s) 148, 1014, 1118, 1344
SfaNI GCATC 4 cut(s) 170, 951, 1281, 1397
Sfr303I CCGCGG 1 cut(s) 1386
SgrBI CCGCGG 1 cut(s) 1386
SinI GGWCC 2 cut(s) 301, 703
SmiMI CAYNNNNRTG 4 cut(s) 1007, 1205, 1211, 1229
Sse9I AATT 7 cut(s) 20, 549, 581, 639, 723, 994, 1096
SsiI CCGC 5 cut(s) 438, 701, 909, 1383, 1385
SspMI CTAG 5 cut(s) 89, 602, 653, 1074, 1127
StyD4I CCNGG 4 cut(s) 191, 965, 981, 1116
StyI CCWWGG 2 cut(s) 1206, 1377
TaaI ACNGT 5 cut(s) 130, 648, 1038, 1068, 1198
TaqI TCGA 2 cut(s) 467, 1062
TasI AATT 7 cut(s) 20, 549, 581, 639, 723, 994, 1096
TauI GCSGC 3 cut(s) 911, 1385, 1388
TfiI GAWTC 3 cut(s) 41, 494, 1312
Tru1I TTAA 2 cut(s) 398, 1446
Tru9I TTAA 2 cut(s) 398, 1446
TscAI CASTG 2 cut(s) 810, 1053
TseFI GTSAC 1 cut(s) 1192
TseI GCWGC 3 cut(s) 254, 605, 743
Tsp45I GTSAC 1 cut(s) 1192
TspDTI ATGAA 5 cut(s) 220, 851, 871, 1090, 1151
TspRI CASTG 2 cut(s) 810, 1053
VneI GTGCAC 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 301, 703
XapI RAATTY 3 cut(s) 20, 549, 723
XceI RCATGY 2 cut(s) 508, 1156
XspI CTAG 5 cut(s) 89, 602, 653, 1074, 1127
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.