RH6CG477900

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0005525
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG477900.1

Sequence Viewer

Length: 1461 bp
ATGGCGTTGAGTGAGGTTGAAGCTGAATTTCAACATGACTTATCTGAATCTGGTTTGAACAATCCGGCGAAGTACGGGGAAGCTGGAGAAGAACTACAGGTGGATGATGATGGCAAACTCAAAAGGACTGGAACGGTATGGACTGCCTGTGCCCATATAATCACAGCATCAATAGGAGCTGGAGTGCTATCTCTAGCCTGGGCAATGGCCCAACTCGGATGGCTTGCCGGCATTTTCATTCTCTTGTTCTGCACCTTCGCTGCTGGCTACGCTTCCACTCTCTTAGCAGATTGTTACAGATTTCCGGACCCAGTGTCAGGCAAGAGAAACTACTCCTATATGGAGGCTGTCAAAGTCTATTTAGGTGGAACAATGCACAAGATTTGTGGATGGATGTTATATTTGAACCTTGCTACCATTGGAGTTGGCTTCACTATAACCACCGCAAAAAGCTTGGTGGCTATACAGAAGTCGAGTTGTCATCGCAAAAATGGTGAAGATTCTCCATGCATGTTTTCCAACATTCCACATATGGTTGGATTTGGGCTTGTTGAAATTCTCTTATCACAACTCCAAAACTTTCACAAGTTGACTTGGCTCTCTAAGCTTGCAGCCATGATGTCTTTTGTCTATGCAACTATTGGAATTGGACTTTCTCTAGCTAAGATCATATCAGGGGATGGAGGAACAACATATCTTGCAGGGGCGGACCGGTCGTCATCGGAAAAAATTTGGATGATGTTTATAGCAGCCGGAGATATTGCATTTGCTTGCTCGTATTCTCTTATCCTGTTTGATATCCAAGACACCCTGAAGTCATCGCCACCAGAAAACAAAGTGATGAAGAGGGCTGTTGTGATAGGGGGTTCGACTATGACATTATTCTTCATGATGTGTGCTAGCTTGGGTTATGCTGCGTTCGGCAACAAGACACCGGAAAACCTGCTTGCTGGTTTTGGAGATGAGATGCCCTGGGCATTCTGGCTTCTTGATTTGGCTAATTTTTGTGTTGTGTTGCACATAGTTGGTGCATTTCAGGTACTATGCCAACCAGTGTTTGGCATTGTTGAACTGTTGGCTAGTAGAAGGTGGCCAAAGTCCAATTTCATTAACAAAGAGAACCAAGTCAGACTAGGGTACATGAAGTTCGATATAAACATGTTTAGGCTGACATGGAGAACAACCTTTGTGGTGTTGGCGACTTTCATTGCCATGGCAATGCCATTCTTCACAGACATGCTTGCGCTTCTTGGAGCTATCGGGTACTGGCCTCTTATCGTTTATGTCCCAATAGAGATGCACATTGTGCAAAACAAGATTCAGAAACAAACCCTTCGCTGGTTCGGGCTCCAACTCTTGAGCTTTTTGTGCTTGCTTCTTTCCTTGGCTGCAGCATCTGGTTCCATTTATGGTCTGCATAAGGGTCTCGGTGCGTACAAGCTCTTCCAAGTTAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

486

Amino Acids

53.54

Weight (kDa)

8.19

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 42 - 472 6.5e-100 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 951
AccB7I CCANNNNNTGG 1 cut(s) 1058
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 2 cut(s) 444, 707
AcoI YGGCCR 1 cut(s) 1091
AcsI RAATTY 3 cut(s) 26, 555, 729
AcuI CTGAAG 1 cut(s) 833
AdeI CACNNNGTG 1 cut(s) 1306
AfaI GTAC 5 cut(s) 74, 1041, 1139, 1265, 1436
AfiI CCNNNNNNNGG 3 cut(s) 317, 1058, 1338
AflIII ACRYGT 1 cut(s) 1158
AgeI ACCGGT 1 cut(s) 711
AgsI TTSAA 6 cut(s) 20, 32, 58, 406, 554, 1070
AhdI GACNNNNNGTC 2 cut(s) 313, 715
AjnI CCWGG 2 cut(s) 197, 971
Alw26I GTCTC 1 cut(s) 1430
AlwNI CAGNNNCTG 1 cut(s) 1397
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 3 cut(s) 207, 1091, 1268
ApeKI GCWGC 6 cut(s) 260, 611, 749, 914, 1388, 1391
ApoI RAATTY 3 cut(s) 26, 555, 729
AsiGI ACCGGT 1 cut(s) 711
AspLEI GCGC 1 cut(s) 1246
AspS9I GGNCC 3 cut(s) 208, 307, 709
AsuHPI GGTGA 1 cut(s) 506
AsuNHI GCTAGC 1 cut(s) 899
AvaII GGWCC 2 cut(s) 307, 709
BaeGI GKGCMC 1 cut(s) 154
BalI TGGCCA 1 cut(s) 1093
BanII GRGCYC 1 cut(s) 1350
BarI GAAGNNNNNNTAC 2 cut(s) 1427, 1459
BbvI GCAGC 6 cut(s) 247, 623, 761, 901, 1375, 1403
BccI CCATC 4 cut(s) 104, 213, 384, 674
BciT130I CCWGG 2 cut(s) 199, 973
BcoDI GTCTC 1 cut(s) 1430
BfaI CTAG 5 cut(s) 194, 659, 900, 1080, 1133
BfmI CTRYAG 2 cut(s) 95, 1389
BfuAI ACCTGC 1 cut(s) 951
BisI GCNGC 6 cut(s) 261, 612, 750, 915, 1389, 1392
BlsI GCNGC 6 cut(s) 262, 613, 751, 916, 1390, 1393
Bme1390I CCNGG 2 cut(s) 199, 973
Bme18I GGWCC 2 cut(s) 307, 709
BmeRI GACNNNNNGTC 2 cut(s) 313, 715
BmgT120I GGNCC 3 cut(s) 208, 307, 709
BmiI GGNNCC 3 cut(s) 309, 1349, 1402
BmrFI CCNGG 2 cut(s) 199, 973
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 4 cut(s) 176, 957, 1287, 1403
BmtI GCTAGC 1 cut(s) 903
BmuI ACTGGG 1 cut(s) 305
BpmI CTGGAG 2 cut(s) 105, 201
BpuEI CTTGAG 1 cut(s) 1378
BsaI GGTCTC 1 cut(s) 1430
BsaJI CCNNGG 5 cut(s) 198, 971, 972, 1212, 1383
BsaWI WCCGGW 3 cut(s) 304, 711, 934
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 1058, 1338
Bse118I RCCGGY 2 cut(s) 227, 711
Bse1I ACTGG 4 cut(s) 133, 311, 1052, 1271
Bse3DI GCAATG 3 cut(s) 210, 1206, 1224
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 2 cut(s) 199, 973
BseDI CCNNGG 5 cut(s) 198, 971, 972, 1212, 1383
BseGI GGATG 6 cut(s) 109, 224, 395, 399, 685, 741
BseLI CCNNNNNNNGG 3 cut(s) 317, 1058, 1338
BseMI GCAATG 3 cut(s) 210, 1206, 1224
BseNI ACTGG 4 cut(s) 133, 311, 1052, 1271
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 6 cut(s) 247, 623, 761, 901, 1375, 1403
BsgI GTGCAG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 716
BshFI GGCC 3 cut(s) 209, 1093, 1270
BshTI ACCGGT 1 cut(s) 711
BsiEI CGRYCG 1 cut(s) 716
BsiSI CCGG 6 cut(s) 65, 228, 305, 712, 753, 935
BslFI GGGAC 1 cut(s) 1271
BslI CCNNNNNNNGG 3 cut(s) 317, 1058, 1338
BsmAI GTCTC 1 cut(s) 1430
BsmFI GGGAC 1 cut(s) 1271
BsmI GAATGC 1 cut(s) 977
BsnI GGCC 3 cut(s) 209, 1093, 1270
Bso31I GGTCTC 1 cut(s) 1430
Bsp1286I GDGCHC 2 cut(s) 154, 1350
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 1 cut(s) 666
Bsp19I CCATGG 1 cut(s) 1212
BspACI CCGC 2 cut(s) 444, 707
BspANI GGCC 3 cut(s) 209, 1093, 1270
BspEI TCCGGA 1 cut(s) 304
BspHI TCATGA 1 cut(s) 888
BspLI GGNNCC 3 cut(s) 309, 1349, 1402
BspMAI CTGCAG 1 cut(s) 1393
BspMI ACCTGC 1 cut(s) 951
BspOI GCTAGC 1 cut(s) 903
BspQI GCTCTTC 1 cut(s) 1448
BspTNI GGTCTC 1 cut(s) 1430
BsrDI GCAATG 3 cut(s) 210, 1206, 1224
BsrFI RCCGGY 2 cut(s) 227, 711
BsrI ACTGG 4 cut(s) 133, 311, 1052, 1271
BssAI RCCGGY 2 cut(s) 227, 711
BssECI CCNNGG 5 cut(s) 198, 971, 972, 1212, 1383
BssMI GATC 1 cut(s) 666
BssT1I CCWWGG 2 cut(s) 1212, 1383
Bst2UI CCWGG 2 cut(s) 199, 973
Bst4CI ACNGT 2 cut(s) 136, 1074
Bst6I CTCTTC 2 cut(s) 839, 1448
BstAPI GCANNNNNTGC 1 cut(s) 1306
BstC8I GCNNGC 9 cut(s) 225, 229, 265, 609, 772, 901, 948, 1242, 1373
BstDEI CTNAG 3 cut(s) 283, 603, 663
BstDSI CCRYGG 1 cut(s) 1212
BstF5I GGATG 6 cut(s) 109, 224, 395, 399, 685, 741
BstHHI GCGC 1 cut(s) 1246
BstKTI GATC 1 cut(s) 669
BstMAI GTCTC 1 cut(s) 1430
BstMBI GATC 1 cut(s) 666
BstMCI CGRYCG 1 cut(s) 716
BstMWI GCNNNNNNNGC 4 cut(s) 269, 604, 1306, 1368
BstNI CCWGG 2 cut(s) 199, 973
BstNSI RCATGY 3 cut(s) 514, 1162, 1240
BstSCI CCNGG 2 cut(s) 197, 971
BstSFI CTRYAG 2 cut(s) 95, 1389
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 6 cut(s) 247, 623, 761, 901, 1375, 1403
BsuRI GGCC 3 cut(s) 209, 1093, 1270
BtgI CCRYGG 1 cut(s) 1212
BtgZI GCGATG 2 cut(s) 467, 804
BtsCI GGATG 6 cut(s) 109, 224, 395, 399, 685, 741
BtsIMutI CAGTG 2 cut(s) 318, 1059
BveI ACCTGC 1 cut(s) 951
Cac8I GCNNGC 9 cut(s) 225, 229, 265, 609, 772, 901, 948, 1242, 1373
CaiI CAGNNNCTG 1 cut(s) 1397
CciI TCATGA 1 cut(s) 888
CfoI GCGC 1 cut(s) 1246
Cfr10I RCCGGY 2 cut(s) 227, 711
Cfr13I GGNCC 3 cut(s) 208, 307, 709
CpoI CGGWCCG 1 cut(s) 709
Csp6I GTAC 5 cut(s) 73, 1040, 1138, 1264, 1435
CspAI ACCGGT 1 cut(s) 711
CspCI CAANNNNNGTGG 4 cut(s) 367, 402, 1170, 1205
CspI CGGWCCG 1 cut(s) 709
CviQI GTAC 5 cut(s) 73, 1040, 1138, 1264, 1435
DdeI CTNAG 3 cut(s) 283, 603, 663
DpnI GATC 1 cut(s) 668
DpnII GATC 1 cut(s) 666
DraIII CACNNNGTG 1 cut(s) 1306
DriI GACNNNNNGTC 2 cut(s) 313, 715
EaeI YGGCCR 1 cut(s) 1091
Eam1104I CTCTTC 2 cut(s) 839, 1448
Eam1105I GACNNNNNGTC 2 cut(s) 313, 715
EarI CTCTTC 2 cut(s) 839, 1448
EciI GGCGGA 1 cut(s) 722
Eco130I CCWWGG 2 cut(s) 1212, 1383
Eco24I GRGCYC 1 cut(s) 1350
Eco31I GGTCTC 1 cut(s) 1430
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 2 cut(s) 307, 709
Eco57I CTGAAG 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 197, 971
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 2 cut(s) 1212, 1383
EcoT22I ATGCAT 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 1350
ErhI CCWWGG 2 cut(s) 1212, 1383
FaqI GGGAC 1 cut(s) 1271
FauNDI CATATG 1 cut(s) 531
Fnu4HI GCNGC 6 cut(s) 261, 612, 750, 915, 1389, 1392
FokI GGATG 6 cut(s) 116, 231, 402, 406, 692, 748
FriOI GRGCYC 1 cut(s) 1350
Fsp4HI GCNGC 6 cut(s) 261, 612, 750, 915, 1389, 1392
FspBI CTAG 5 cut(s) 194, 659, 900, 1080, 1133
GlaI GCGC 1 cut(s) 1245
GluI GCNGC 6 cut(s) 261, 612, 750, 915, 1389, 1392
GsuI CTGGAG 2 cut(s) 105, 201
HaeIII GGCC 3 cut(s) 209, 1093, 1270
HapII CCGG 6 cut(s) 65, 228, 305, 712, 753, 935
HhaI GCGC 1 cut(s) 1246
Hin6I GCGC 1 cut(s) 1244
HinP1I GCGC 1 cut(s) 1244
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HindIII AAGCTT 2 cut(s) 451, 605
HinfI GANTC 3 cut(s) 47, 500, 1318
HpaII CCGG 6 cut(s) 65, 228, 305, 712, 753, 935
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 1 cut(s) 591
Hpy188I TCNGA 5 cut(s) 46, 218, 724, 1130, 1323
Hpy188III TCNNGA 4 cut(s) 305, 889, 989, 1357
Hpy8I GTNNAC 1 cut(s) 591
HpyAV CCTTC 3 cut(s) 265, 1080, 1343
HpyCH4III ACNGT 2 cut(s) 136, 1074
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 604, 1306, 1368
HpyF3I CTNAG 3 cut(s) 283, 603, 663
HspAI GCGC 1 cut(s) 1244
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Kzo9I GATC 1 cut(s) 666
LguI GCTCTTC 1 cut(s) 1448
LmnI GCTCC 3 cut(s) 176, 1253, 1353
Lsp1109I GCAGC 6 cut(s) 247, 623, 761, 901, 1375, 1403
LweI GCATC 4 cut(s) 176, 957, 1287, 1403
MaeI CTAG 5 cut(s) 194, 659, 900, 1080, 1133
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 668
MboI GATC 1 cut(s) 666
MboII GAAGA 6 cut(s) 101, 509, 856, 877, 1219, 1435
MhlI GDGCHC 2 cut(s) 154, 1350
MlsI TGGCCA 1 cut(s) 1093
MluCI AATT 6 cut(s) 26, 555, 645, 729, 1000, 1102
MluNI TGGCCA 1 cut(s) 1093
MmeI TCCRAC 3 cut(s) 517, 543, 1375
MnlI CCTC 5 cut(s) 7, 337, 677, 840, 1281
Mox20I TGGCCA 1 cut(s) 1093
Mph1103I ATGCAT 1 cut(s) 512
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 1093
MseI TTAA 2 cut(s) 1110, 1452
MslI CAYNNNNRTG 3 cut(s) 1211, 1217, 1235
Msp20I TGGCCA 1 cut(s) 1093
MspI CCGG 6 cut(s) 65, 228, 305, 712, 753, 935
MspR9I CCNGG 2 cut(s) 199, 973
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 2 cut(s) 199, 973
MwoI GCNNNNNNNGC 4 cut(s) 269, 604, 1306, 1368
NaeI GCCGGC 1 cut(s) 229
NcoI CCATGG 1 cut(s) 1212
NdeI CATATG 1 cut(s) 531
NdeII GATC 1 cut(s) 666
NgoMIV GCCGGC 1 cut(s) 227
NheI GCTAGC 1 cut(s) 899
NlaIV GGNNCC 3 cut(s) 309, 1349, 1402
NsiI ATGCAT 1 cut(s) 512
NspI RCATGY 3 cut(s) 514, 1162, 1240
PagI TCATGA 1 cut(s) 888
PasI CCCWGGG 1 cut(s) 972
PciI ACATGT 1 cut(s) 1158
PciSI GCTCTTC 1 cut(s) 1448
PctI GAATGC 1 cut(s) 977
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 3 cut(s) 47, 500, 1318
PflMI CCANNNNNTGG 1 cut(s) 1058
PinAI ACCGGT 1 cut(s) 711
PkrI GCNGC 6 cut(s) 262, 613, 751, 916, 1390, 1393
PscI ACATGT 1 cut(s) 1158
Psp6I CCWGG 2 cut(s) 197, 971
PspGI CCWGG 2 cut(s) 197, 971
PspN4I GGNNCC 3 cut(s) 309, 1349, 1402
PspPI GGNCC 3 cut(s) 208, 307, 709
PsrI GAACNNNNNNTAC 2 cut(s) 1130, 1162
PstI CTGCAG 1 cut(s) 1393
PstNI CAGNNNCTG 1 cut(s) 1397
RsaI GTAC 5 cut(s) 74, 1041, 1139, 1265, 1436
RsaNI GTAC 5 cut(s) 73, 1040, 1138, 1264, 1435
RseI CAYNNNNRTG 3 cut(s) 1211, 1217, 1235
Rsr2I CGGWCCG 1 cut(s) 709
RsrII CGGWCCG 1 cut(s) 709
SapI GCTCTTC 1 cut(s) 1448
SaqAI TTAA 2 cut(s) 1110, 1452
SatI GCNGC 6 cut(s) 261, 612, 750, 915, 1389, 1392
Sau3AI GATC 1 cut(s) 666
Sau96I GGNCC 3 cut(s) 208, 307, 709
ScrFI CCNGG 2 cut(s) 199, 973
SduI GDGCHC 2 cut(s) 154, 1350
SfaNI GCATC 4 cut(s) 176, 957, 1287, 1403
SfcI CTRYAG 2 cut(s) 95, 1389
SinI GGWCC 2 cut(s) 307, 709
SmiMI CAYNNNNRTG 3 cut(s) 1211, 1217, 1235
SmlI CTYRAG 1 cut(s) 1357
SmoI CTYRAG 1 cut(s) 1357
Sse9I AATT 6 cut(s) 26, 555, 645, 729, 1000, 1102
SsiI CCGC 2 cut(s) 444, 707
SspMI CTAG 5 cut(s) 194, 659, 900, 1080, 1133
StyD4I CCNGG 2 cut(s) 197, 971
StyI CCWWGG 2 cut(s) 1212, 1383
TaaI ACNGT 2 cut(s) 136, 1074
TaqI TCGA 3 cut(s) 473, 869, 1149
TasI AATT 6 cut(s) 26, 555, 645, 729, 1000, 1102
TfiI GAWTC 3 cut(s) 47, 500, 1318
Tru1I TTAA 2 cut(s) 1110, 1452
Tru9I TTAA 2 cut(s) 1110, 1452
TscAI CASTG 2 cut(s) 318, 1059
TseI GCWGC 6 cut(s) 260, 611, 749, 914, 1388, 1391
TspDTI ATGAA 6 cut(s) 226, 857, 877, 1096, 1157, 1195
TspRI CASTG 2 cut(s) 318, 1059
Van91I CCANNNNNTGG 1 cut(s) 1058
VpaK11BI GGWCC 2 cut(s) 307, 709
XapI RAATTY 3 cut(s) 26, 555, 729
XceI RCATGY 3 cut(s) 514, 1162, 1240
XcmI CCANNNNNNNNNTGG 1 cut(s) 1055
XspI CTAG 5 cut(s) 194, 659, 900, 1080, 1133
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.