Rh6DG464700

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005525
Physical Location & Seq
Forward (+)
63302013 .. 63306064
4052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG464700.1

Sequence Viewer

Length: 1461 bp
ATGGCGTTGAGTGAGGTTAAGGCTGAATTTCAACATGACTTATCTGAATCTGGTTTGAACAATCCTGCGAAAAACGTGGAAGCTGGAGAAGAACTGCTGGTGGATGATGATGGCAAACTCAAAAGAACTGGAACAGTATGGACTGCCAGTGCCCATATAATCACAACATCAATAGGTGCAGGGGTGCTATCTCTAGCCTGGGCAATGGCCCAACTCGGATGGCTTGCCGGGGTTTTTATTCTCTTGTTCTGCACCTTCACTGCTGGCTACGCTTCCACTCTCTTAGCAGATTGTTACAGATATCCAGACCCAGTTTCAGGCAAGAGAAACTGCTCTTATATGGAGACTGTCAAAGTCTATTTAGGTGGAACAATGCACATGATTTGTGGATGGATTTTATATTTAGACCTTGCTGCCATTGGAGTTGGCTTCACTATAACCACTGCAAATAGCTTGGTGGCTATACAGAAGTCCAATTGTCATCGCAAAAATGGTGAAGATTCTCCATGCATGTTTTCCTATATTCCACACATGGTTGGATTTGGGCTTGTTGAAATTCTCTTATCACAACTCCAAAACTTTCACAAATTGACTTGGCTCTCTAAGCTTGCAGCTATTATGTCATTTGTCTATGCAACTATTGGAATTGGACTTTCTCTTGCTAAGATCATATCAGAGGATGGAGGAACAACCTTTCTTGCAGGGGCGGATCAGTCGTCATCGGAAAAAATTTGGATGATGCTTATAGCAGTGGGAGATATTGCATTTGCTTGCTCGTATGCTCTTGTCCTGTTTGAGATCCAAGACACACTGAAGTCATCGCCACCAGAAAACAAAGTGATGAAGAGGGCTGTTGTGATAGGGGGTTCGACTATGACATTATTCTTCATGATGTGTGCTAGCTTGGGTTATGCTGCGTTCGGCAACAAGACACCGGAAAACCTGCTTGCTGGTTTTGGAGATGAGATGCCCTGGGCATTCTGGCTTCTTGATTTGGCTAATTTTTGTATTGTGTTGCACATGGTTGGTGCATTTCAGGTACTATGCCAACCAGTGTTTGGCATTGTTGAACTGTTGGCTAGTAGAAGGTGGCCAAAGTCCAATTTCATGAACAAAGAGAACCAAGTCAGACTAGGGTACATGAAGTTCGATATAAACATGTTTAGGCTGACATGGAGAACAACCTTTGTGGTGTTGGCGACTTTCATTGCCATGGCAATGCCATTCTTCACAGACATGCTTGCACTTCTTGGAGCTATCGGGTACTGGCCTCTTATAGTTTATGTCCCAATAGAGATGCACATTGTGCAAAACAAGATTCAGAAACAAACCCTTCGCTGGTTCGGGCTCCAACTCCTGAGCTTTTTGTGCTTGCTTCTTTCCTTGGCTGCGGCATCTGGTTCCATTTATGGTCTGCATAAGGGTCTCGGTGCGTACAAGCTCTTCCAAGTTAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

486

Amino Acids

53.59

Weight (kDa)

7.08

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 42 - 472 1.2e-98 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 951
AccB7I CCANNNNNTGG 1 cut(s) 1058
AciI CCGC 2 cut(s) 707, 1391
AclWI GGATC 2 cut(s) 717, 793
AcoI YGGCCR 1 cut(s) 1091
AcsI RAATTY 3 cut(s) 26, 555, 729
AcuI CTGAAG 1 cut(s) 833
AdeI CACNNNGTG 1 cut(s) 1306
AfaI GTAC 4 cut(s) 1041, 1139, 1265, 1436
AfiI CCNNNNNNNGG 3 cut(s) 317, 1058, 1338
AflIII ACRYGT 1 cut(s) 1158
AgsI TTSAA 4 cut(s) 32, 58, 554, 1070
AjnI CCWGG 2 cut(s) 197, 971
AluBI AGCT 8 cut(s) 83, 453, 607, 614, 903, 1256, 1362, 1441
AluI AGCT 8 cut(s) 83, 453, 607, 614, 903, 1256, 1362, 1441
Alw26I GTCTC 2 cut(s) 338, 1430
AlwI GGATC 2 cut(s) 717, 793
AoxI GGCC 3 cut(s) 207, 1091, 1268
ApeKI GCWGC 4 cut(s) 413, 611, 914, 1388
ApoI RAATTY 3 cut(s) 26, 555, 729
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 506
AsuNHI GCTAGC 1 cut(s) 899
BaeGI GKGCMC 1 cut(s) 154
BalI TGGCCA 1 cut(s) 1093
BanII GRGCYC 1 cut(s) 1350
BarI GAAGNNNNNNTAC 2 cut(s) 1427, 1459
BbvI GCAGC 4 cut(s) 400, 623, 901, 1375
BccI CCATC 4 cut(s) 104, 213, 384, 674
BciT130I CCWGG 2 cut(s) 199, 973
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 338, 1430
BfaI CTAG 4 cut(s) 194, 900, 1080, 1133
BfuAI ACCTGC 1 cut(s) 951
BisI GCNGC 5 cut(s) 414, 612, 915, 1389, 1392
BlsI GCNGC 5 cut(s) 415, 613, 916, 1390, 1393
Bme1390I CCNGG 3 cut(s) 199, 229, 973
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 1349, 1402
BmrFI CCNGG 3 cut(s) 199, 229, 973
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 4 cut(s) 729, 957, 1287, 1403
BmtI GCTAGC 1 cut(s) 903
BmuI ACTGGG 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 1358
BpuMI CCSGG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 1430
BsaJI CCNNGG 6 cut(s) 198, 228, 971, 972, 1212, 1383
BsaWI WCCGGW 1 cut(s) 934
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 1058, 1338
Bse1I ACTGG 5 cut(s) 133, 147, 311, 1052, 1271
Bse3DI GCAATG 3 cut(s) 210, 1206, 1224
BseBI CCWGG 2 cut(s) 199, 973
BseDI CCNNGG 6 cut(s) 198, 228, 971, 972, 1212, 1383
BseGI GGATG 5 cut(s) 109, 224, 395, 685, 741
BseLI CCNNNNNNNGG 3 cut(s) 317, 1058, 1338
BseMI GCAATG 3 cut(s) 210, 1206, 1224
BseMII CTCAG 1 cut(s) 1349
BseNI ACTGG 5 cut(s) 133, 147, 311, 1052, 1271
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 4 cut(s) 400, 623, 901, 1375
BsgI GTGCAG 2 cut(s) 198, 235
BshFI GGCC 3 cut(s) 209, 1093, 1270
BsiSI CCGG 2 cut(s) 228, 935
BslFI GGGAC 1 cut(s) 1271
BslI CCNNNNNNNGG 3 cut(s) 317, 1058, 1338
BsmAI GTCTC 2 cut(s) 338, 1430
BsmFI GGGAC 1 cut(s) 1271
BsmI GAATGC 1 cut(s) 977
BsnI GGCC 3 cut(s) 209, 1093, 1270
Bso31I GGTCTC 1 cut(s) 1430
Bsp1286I GDGCHC 2 cut(s) 154, 1350
Bsp143I GATC 3 cut(s) 666, 709, 798
Bsp19I CCATGG 1 cut(s) 1212
BspACI CCGC 2 cut(s) 707, 1391
BspANI GGCC 3 cut(s) 209, 1093, 1270
BspCNI CTCAG 1 cut(s) 1350
BspHI TCATGA 2 cut(s) 888, 1107
BspLI GGNNCC 2 cut(s) 1349, 1402
BspMI ACCTGC 1 cut(s) 951
BspOI GCTAGC 1 cut(s) 903
BspPI GGATC 2 cut(s) 717, 793
BspQI GCTCTTC 1 cut(s) 1448
BspTNI GGTCTC 1 cut(s) 1430
BsrDI GCAATG 3 cut(s) 210, 1206, 1224
BsrI ACTGG 5 cut(s) 133, 147, 311, 1052, 1271
BssECI CCNNGG 6 cut(s) 198, 228, 971, 972, 1212, 1383
BssMI GATC 3 cut(s) 666, 709, 798
BssT1I CCWWGG 2 cut(s) 1212, 1383
Bst2UI CCWGG 2 cut(s) 199, 973
Bst4CI ACNGT 3 cut(s) 136, 349, 1074
Bst6I CTCTTC 2 cut(s) 839, 1448
BstAPI GCANNNNNTGC 1 cut(s) 1306
BstC8I GCNNGC 8 cut(s) 225, 265, 609, 772, 901, 948, 1242, 1373
BstDEI CTNAG 4 cut(s) 283, 603, 663, 1358
BstDSI CCRYGG 1 cut(s) 1212
BstF5I GGATG 5 cut(s) 109, 224, 395, 685, 741
BstKTI GATC 3 cut(s) 669, 712, 801
BstMAI GTCTC 2 cut(s) 338, 1430
BstMBI GATC 3 cut(s) 666, 709, 798
BstMWI GCNNNNNNNGC 4 cut(s) 269, 604, 1306, 1368
BstNI CCWGG 2 cut(s) 199, 973
BstNSI RCATGY 3 cut(s) 514, 1162, 1240
BstSCI CCNGG 3 cut(s) 197, 227, 971
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 400, 623, 901, 1375
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
BsuRI GGCC 3 cut(s) 209, 1093, 1270
BtgI CCRYGG 1 cut(s) 1212
BtgZI GCGATG 2 cut(s) 467, 804
BtsCI GGATG 5 cut(s) 109, 224, 395, 685, 741
BtsI GCAGTG 3 cut(s) 258, 441, 756
BtsIMutI CAGTG 6 cut(s) 154, 258, 441, 756, 809, 1059
BveI ACCTGC 1 cut(s) 951
Cac8I GCNNGC 8 cut(s) 225, 265, 609, 772, 901, 948, 1242, 1373
CciI TCATGA 2 cut(s) 888, 1107
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 4 cut(s) 1040, 1138, 1264, 1435
CspCI CAANNNNNGTGG 2 cut(s) 1170, 1205
CviQI GTAC 4 cut(s) 1040, 1138, 1264, 1435
DdeI CTNAG 4 cut(s) 283, 603, 663, 1358
DpnI GATC 3 cut(s) 668, 711, 800
DpnII GATC 3 cut(s) 666, 709, 798
DraIII CACNNNGTG 1 cut(s) 1306
EaeI YGGCCR 1 cut(s) 1091
Eam1104I CTCTTC 2 cut(s) 839, 1448
EarI CTCTTC 2 cut(s) 839, 1448
EciI GGCGGA 1 cut(s) 722
Eco130I CCWWGG 2 cut(s) 1212, 1383
Eco24I GRGCYC 1 cut(s) 1350
Eco31I GGTCTC 1 cut(s) 1430
Eco32I GATATC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 197, 971
EcoRV GATATC 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 1212, 1383
EcoT22I ATGCAT 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 1350
ErhI CCWWGG 2 cut(s) 1212, 1383
FaqI GGGAC 1 cut(s) 1271
Fnu4HI GCNGC 5 cut(s) 414, 612, 915, 1389, 1392
FokI GGATG 5 cut(s) 116, 231, 402, 692, 748
FriOI GRGCYC 1 cut(s) 1350
Fsp4HI GCNGC 5 cut(s) 414, 612, 915, 1389, 1392
FspBI CTAG 4 cut(s) 194, 900, 1080, 1133
GluI GCNGC 5 cut(s) 414, 612, 915, 1389, 1392
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 3 cut(s) 209, 1093, 1270
HapII CCGG 2 cut(s) 228, 935
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 3 cut(s) 47, 500, 1318
HpaII CCGG 2 cut(s) 228, 935
HphI GGTGA 1 cut(s) 506
Hpy188I TCNGA 6 cut(s) 46, 218, 676, 724, 1130, 1323
Hpy188III TCNNGA 5 cut(s) 305, 889, 989, 1108, 1357
HpyAV CCTTC 3 cut(s) 265, 1080, 1343
HpyCH4III ACNGT 3 cut(s) 136, 349, 1074
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 604, 1306, 1368
HpyF3I CTNAG 4 cut(s) 283, 603, 663, 1358
HpySE526I ACGT 1 cut(s) 75
Kzo9I GATC 3 cut(s) 666, 709, 798
LguI GCTCTTC 1 cut(s) 1448
LmnI GCTCC 2 cut(s) 1253, 1353
Lsp1109I GCAGC 4 cut(s) 400, 623, 901, 1375
LweI GCATC 4 cut(s) 729, 957, 1287, 1403
MaeI CTAG 4 cut(s) 194, 900, 1080, 1133
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 293
MalI GATC 3 cut(s) 668, 711, 800
MboI GATC 3 cut(s) 666, 709, 798
MboII GAAGA 6 cut(s) 101, 509, 856, 877, 1219, 1435
MfeI CAATTG 1 cut(s) 475
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 2 cut(s) 154, 1350
MlsI TGGCCA 1 cut(s) 1093
MluCI AATT 8 cut(s) 26, 475, 555, 587, 645, 729, 1000, 1102
MluNI TGGCCA 1 cut(s) 1093
MmeI TCCRAC 2 cut(s) 517, 1375
MnlI CCTC 5 cut(s) 7, 670, 677, 840, 1281
Mox20I TGGCCA 1 cut(s) 1093
Mph1103I ATGCAT 1 cut(s) 512
MscI TGGCCA 1 cut(s) 1093
MseI TTAA 2 cut(s) 18, 1452
MslI CAYNNNNRTG 3 cut(s) 1211, 1217, 1235
Msp20I TGGCCA 1 cut(s) 1093
MspI CCGG 2 cut(s) 228, 935
MspR9I CCNGG 3 cut(s) 199, 229, 973
MunI CAATTG 1 cut(s) 475
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 2 cut(s) 199, 973
MwoI GCNNNNNNNGC 4 cut(s) 269, 604, 1306, 1368
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 1212
NdeII GATC 3 cut(s) 666, 709, 798
NheI GCTAGC 1 cut(s) 899
NlaIV GGNNCC 2 cut(s) 1349, 1402
NsiI ATGCAT 1 cut(s) 512
NspI RCATGY 3 cut(s) 514, 1162, 1240
PagI TCATGA 2 cut(s) 888, 1107
PasI CCCWGGG 1 cut(s) 972
PciI ACATGT 1 cut(s) 1158
PciSI GCTCTTC 1 cut(s) 1448
PctI GAATGC 1 cut(s) 977
PfeI GAWTC 3 cut(s) 47, 500, 1318
PflMI CCANNNNNTGG 1 cut(s) 1058
PkrI GCNGC 5 cut(s) 415, 613, 916, 1390, 1393
PscI ACATGT 1 cut(s) 1158
Psp6I CCWGG 2 cut(s) 197, 971
PspGI CCWGG 2 cut(s) 197, 971
PspN4I GGNNCC 2 cut(s) 1349, 1402
PspPI GGNCC 1 cut(s) 208
PsrI GAACNNNNNNTAC 2 cut(s) 1130, 1162
PsuI RGATCY 1 cut(s) 798
RsaI GTAC 4 cut(s) 1041, 1139, 1265, 1436
RsaNI GTAC 4 cut(s) 1040, 1138, 1264, 1435
RseI CAYNNNNRTG 3 cut(s) 1211, 1217, 1235
SapI GCTCTTC 1 cut(s) 1448
SaqAI TTAA 2 cut(s) 18, 1452
SatI GCNGC 5 cut(s) 414, 612, 915, 1389, 1392
Sau3AI GATC 3 cut(s) 666, 709, 798
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 3 cut(s) 199, 229, 973
SduI GDGCHC 2 cut(s) 154, 1350
SfaNI GCATC 4 cut(s) 729, 957, 1287, 1403
SmiMI CAYNNNNRTG 3 cut(s) 1211, 1217, 1235
Sse9I AATT 8 cut(s) 26, 475, 555, 587, 645, 729, 1000, 1102
SsiI CCGC 2 cut(s) 707, 1391
SspMI CTAG 4 cut(s) 194, 900, 1080, 1133
StyD4I CCNGG 3 cut(s) 197, 227, 971
StyI CCWWGG 2 cut(s) 1212, 1383
TaaI ACNGT 3 cut(s) 136, 349, 1074
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 869, 1149
TasI AATT 8 cut(s) 26, 475, 555, 587, 645, 729, 1000, 1102
TauI GCSGC 1 cut(s) 1394
TfiI GAWTC 3 cut(s) 47, 500, 1318
Tru1I TTAA 2 cut(s) 18, 1452
Tru9I TTAA 2 cut(s) 18, 1452
TscAI CASTG 6 cut(s) 154, 265, 448, 756, 816, 1059
TseI GCWGC 4 cut(s) 413, 611, 914, 1388
TspDTI ATGAA 6 cut(s) 857, 877, 1096, 1124, 1157, 1195
TspRI CASTG 6 cut(s) 154, 265, 448, 756, 816, 1059
Van91I CCANNNNNTGG 1 cut(s) 1058
XapI RAATTY 3 cut(s) 26, 555, 729
XceI RCATGY 3 cut(s) 514, 1162, 1240
XcmI CCANNNNNNNNNTGG 1 cut(s) 1055
XspI CTAG 4 cut(s) 194, 900, 1080, 1133
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.