Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005525

Physical Location & Seq

Genomic Coordinates Reverse (-)

37679038 .. 37683066

Gene Structure 4029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G444900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGTGAACACAGTGCTTGATCATCAAACTCAGAATGAGTTATGTGAGTCTGGTTCAGAATATGCTCCGAGAAACGTGGAAGATGGAGATGGAGAAGTAGATGATGATGGCAAATCCAAAAGAACTGGGACTGTGTGGACTGCATGTGCACATATAATCACAACATCAATAGGTGCTGGGGTGCTTTCTCTGGCATGGGCAATGTCTCAGCTTGGTTGGGTTGCTGGCATTTGCACTATGTTGTTTTGCACATTAGCTGCCCTTTATGCTGCCACTCTCTTAGCAGATTGCTATAGATTTCCAGACCCAGTTACAGGCAAGAGAAATTACTCTTACATGGAAGCTGTCAAAGCTTATTTAGGTGGAACAATATTGTACAAGTTCTGTGGATGGATGGTGTATTTAAATCTCGCTACAATTGGAGTCGGCTTTACCATCACTACAACAAAAAGCATGGTGGCTATACAGAAATCGCATTGCCATCGCAAAAATGGGGGTGATGCCCCATGCATGTTTTCCAATATTCCACACGTGGTTGCATTTGGAATTGTTGAAATTCTTTTATCTCAACTCCCAAACTTTCACAAGATCTCTTGGCTCTCAAAGCTTGCAGCAATTACGTCTTTTGGGTATGCCTTTATCGGAATTGGACTTTCCCTTTCAAAAATCATAACGGGGCATGGAGGAAAACCCACTGTTGCAGGAGTGGACCTATCTTCATCTGAGAAAATTTGGAGGATGTTTGTAGCAGCTGGAGATATTGCATTTGCTTGCTCATATGCTCTGGTGCTTTTTGATATCCAAGACACACTAAAATCATCGCCACCAGAAAACAAAGTCATGAAGAAGGCTGTCTCAATTGGGGGTTTGGCTATGATCATAGTGTTCTTGATGTGTGGTTCCTTGGGTTATGCTGCCTTTGGAGATAAGACCCCGGAAAATCTTCTAGCTGGTTTTGGAGATGATATGGCCTTCTGGCTAGTTGATATGGCCAATGTTTTCATTGTGTTGCACATAGTTGGTGCATATCAGGTACTTTGCCAACCGGTGTTCCGAATTGTTGAATTATTAGCTAGAAGGAGGTGGAAAAGGTCCAAGTTCATAAACAAAGAGACCCCAATTAGAATTCGGAAGATGAGTTTCAACATCAACATGTTCAGGCTGTCATGGAGGACAGCCTATGGGGTGGTAGTCACATTTGTTGCCATTGCTCTGCCTTTCTTTTCAGACATGCTTGCCCTGCTTGGAGCCATTGGCTACTGGCCACTTATAATCTACATCCCATTGGAGATGCACATTGAGCAAAAGAAGATTGGGAAGCTTACAATTCGATGGTTTGGGCTCCACTTGTTGAGCTTTCTGTGCTTGCTTCTTTCCTTGGCTGCAGCATCTGGTGCCATTCGTGGTCTTTATAAGAGCCTCAATACTTACAAGCTCTTCCAATATAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

485

Amino Acids

53.37

Weight (kDa)

9.05

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35270 FvH4_2g35270 FvH4_2g35270 FvH4_2g35270
malus_domestica	MD08G1110600.v1.1 MD15G1089800.v1.1
prunus_persica	Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306641 RchiOBHm_Chr6g0306671
rosa_laevigata	RLG00000010775 RLG00000010777
rosa_multiflora	Rmu_sc0005201.1_g000004 Rmu_sc0005201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161560 Rroxscaffold_7G00161580
rosa_rugosa	Rorug06G0351500
rosa_samantha	Rh6AG463600 Rh6AG463800 Rh6BG437200 Rh6BG437300 Rh6CG477900 Rh6DG464600 Rh6DG464700
rosa_wichuraiana	Rw6G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1271, 1413
AccB1I	GGYRCC	1 cut(s)	1394
AcoI	YGGCCR	2 cut(s)	990, 1262
AcsI	RAATTY	3 cut(s)	555, 729, 1125
AcvI	CACGTG	1 cut(s)	532
AfaI	GTAC	2 cut(s)	377, 1035
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflIII	ACRYGT	2 cut(s)	529, 1152
AgeI	ACCGGT	1 cut(s)	1045
AgsI	TTSAA	4 cut(s)	554, 663, 1064, 1144
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	3 cut(s)	210, 859, 1106
Alw44I	GTGCAC	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	1391
AoxI	GGCC	3 cut(s)	969, 990, 1262
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	7 cut(s)	257, 269, 611, 749, 914, 1382, 1385
ApoI	RAATTY	3 cut(s)	555, 729, 1125
AsiGI	ACCGGT	1 cut(s)	1045
Asp700I	GAANNNNTTC	1 cut(s)	942
AspS9I	GGNCC	2 cut(s)	709, 1092
AsuC2I	CCSGG	1 cut(s)	935
AsuHPI	GGTGA	2 cut(s)	16, 509
AvaII	GGWCC	2 cut(s)	709, 1092
BaeGI	GKGCMC	1 cut(s)	151
BalI	TGGCCA	2 cut(s)	992, 1264
BanI	GGYRCC	1 cut(s)	1394
BanII	GRGCYC	1 cut(s)	1344
BbrPI	CACGTG	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	7 cut(s)	244, 256, 623, 761, 901, 1369, 1397
BccI	CCATC	8 cut(s)	77, 83, 101, 384, 388, 443, 489, 1326
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BclI	TGATCA	2 cut(s)	19, 876
BcnI	CCSGG	1 cut(s)	935
BcoDI	GTCTC	3 cut(s)	210, 859, 1106
BfaI	CTAG	3 cut(s)	947, 980, 1074
BfmI	CTRYAG	2 cut(s)	292, 1383
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	7 cut(s)	258, 270, 612, 750, 915, 1383, 1386
BlsI	GCNGC	7 cut(s)	259, 271, 613, 751, 916, 1384, 1387
Bme1390I	CCNGG	1 cut(s)	935
Bme18I	GGWCC	2 cut(s)	709, 1092
BmgT120I	GGNCC	2 cut(s)	709, 1092
BmiI	GGNNCC	4 cut(s)	901, 1249, 1343, 1396
BmrFI	CCNGG	1 cut(s)	935
BmrI	ACTGGG	2 cut(s)	135, 302
BmsI	GCATC	3 cut(s)	490, 1281, 1397
BmuI	ACTGGG	2 cut(s)	135, 302
BpmI	CTGGAG	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	935
BsaAI	YACGTR	1 cut(s)	532
BsaI	GGTCTC	1 cut(s)	1106
BsaJI	CCNNGG	3 cut(s)	903, 933, 1377
BsaWI	WCCGGW	1 cut(s)	1045
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	1045
Bse1I	ACTGG	3 cut(s)	130, 308, 1265
Bse3DI	GCAATG	3 cut(s)	207, 475, 1206
BseDI	CCNNGG	3 cut(s)	903, 933, 1377
BseGI	GGATG	4 cut(s)	395, 399, 744, 1278
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	3 cut(s)	207, 475, 1206
BseMII	CTCAG	3 cut(s)	44, 221, 714
BseNI	ACTGG	3 cut(s)	130, 308, 1265
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	7 cut(s)	244, 256, 623, 761, 901, 1369, 1397
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	3 cut(s)	971, 992, 1264
BshNI	GGYRCC	1 cut(s)	1394
BshTI	ACCGGT	1 cut(s)	1045
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	935, 1046
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	3 cut(s)	210, 859, 1106
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	3 cut(s)	971, 992, 1264
Bso31I	GGTCTC	1 cut(s)	1106
Bsp1286I	GDGCHC	2 cut(s)	151, 1344
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	19, 588, 876
BspANI	GGCC	3 cut(s)	971, 992, 1264
BspCNI	CTCAG	3 cut(s)	43, 220, 715
BspHI	TCATGA	1 cut(s)	840
BspLI	GGNNCC	4 cut(s)	901, 1249, 1343, 1396
BspMAI	CTGCAG	1 cut(s)	1387
BspQI	GCTCTTC	1 cut(s)	1442
BspT107I	GGYRCC	1 cut(s)	1394
BspTNI	GGTCTC	1 cut(s)	1106
BsrDI	GCAATG	3 cut(s)	207, 475, 1206
BsrFI	RCCGGY	1 cut(s)	1045
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	130, 308, 1265
BssAI	RCCGGY	1 cut(s)	1045
BssECI	CCNNGG	3 cut(s)	903, 933, 1377
BssMI	GATC	3 cut(s)	19, 588, 876
BssT1I	CCWWGG	2 cut(s)	903, 1377
Bst4CI	ACNGT	3 cut(s)	13, 133, 697
Bst6I	CTCTTC	1 cut(s)	1442
BstAPI	GCANNNNNTGC	1 cut(s)	1394
BstAUI	TGTACA	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	532
BstC8I	GCNNGC	5 cut(s)	226, 609, 772, 1236, 1367
BstDEI	CTNAG	4 cut(s)	30, 207, 280, 723
BstF5I	GGATG	4 cut(s)	395, 399, 744, 1278
BstKTI	GATC	3 cut(s)	22, 591, 879
BstMAI	GTCTC	3 cut(s)	210, 859, 1106
BstMBI	GATC	3 cut(s)	19, 588, 876
BstMWI	GCNNNNNNNGC	7 cut(s)	266, 350, 604, 1240, 1300, 1362, 1394
BstNSI	RCATGY	4 cut(s)	147, 514, 1156, 1234
BstSCI	CCNGG	1 cut(s)	933
BstSFI	CTRYAG	2 cut(s)	292, 1383
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	7 cut(s)	244, 256, 623, 761, 901, 1369, 1397
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	971, 992, 1264
BtgZI	GCGATG	2 cut(s)	467, 804
BtsCI	GGATG	4 cut(s)	395, 399, 744, 1278
BtsIMutI	CAGTG	2 cut(s)	18, 693
Cac8I	GCNNGC	5 cut(s)	226, 609, 772, 1236, 1367
CaiI	CAGNNNCTG	1 cut(s)	1391
CciI	TCATGA	1 cut(s)	840
Cfr10I	RCCGGY	1 cut(s)	1045
Cfr13I	GGNCC	2 cut(s)	709, 1092
Csp6I	GTAC	2 cut(s)	376, 1034
CspAI	ACCGGT	1 cut(s)	1045
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviQI	GTAC	2 cut(s)	376, 1034
DdeI	CTNAG	4 cut(s)	30, 207, 280, 723
DpnI	GATC	3 cut(s)	21, 590, 878
DpnII	GATC	3 cut(s)	19, 588, 876
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	2 cut(s)	990, 1262
Eam1104I	CTCTTC	1 cut(s)	1442
EarI	CTCTTC	1 cut(s)	1442
Eco130I	CCWWGG	2 cut(s)	903, 1377
Eco24I	GRGCYC	1 cut(s)	1344
Eco31I	GGTCTC	1 cut(s)	1106
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	2 cut(s)	709, 1092
Eco72I	CACGTG	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	1125
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	2 cut(s)	903, 1377
EcoT22I	ATGCAT	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	1344
ErhI	CCWWGG	2 cut(s)	903, 1377
FaqI	GGGAC	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	2 cut(s)	19, 876
Fnu4HI	GCNGC	7 cut(s)	258, 270, 612, 750, 915, 1383, 1386
FokI	GGATG	4 cut(s)	402, 406, 751, 1265
FriOI	GRGCYC	1 cut(s)	1344
Fsp4HI	GCNGC	7 cut(s)	258, 270, 612, 750, 915, 1383, 1386
FspBI	CTAG	3 cut(s)	947, 980, 1074
GluI	GCNGC	7 cut(s)	258, 270, 612, 750, 915, 1383, 1386
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	3 cut(s)	971, 992, 1264
HapII	CCGG	2 cut(s)	935, 1046
HindIII	AAGCTT	3 cut(s)	351, 605, 1319
HinfI	GANTC	2 cut(s)	47, 423
HpaII	CCGG	2 cut(s)	935, 1046
HphI	GGTGA	2 cut(s)	16, 509
Hpy166II	GTNNAC	4 cut(s)	7, 138, 149, 709
Hpy188I	TCNGA	8 cut(s)	33, 58, 69, 644, 724, 1055, 1131, 1228
Hpy188III	TCNNGA	3 cut(s)	302, 841, 889
Hpy8I	GTNNAC	4 cut(s)	7, 138, 149, 709
HpyAV	CCTTC	3 cut(s)	841, 982, 1071
HpyCH4III	ACNGT	3 cut(s)	13, 133, 697
HpyCH4IV	ACGT	3 cut(s)	75, 531, 620
HpyF10VI	GCNNNNNNNGC	7 cut(s)	266, 350, 604, 1240, 1300, 1362, 1394
HpyF3I	CTNAG	4 cut(s)	30, 207, 280, 723
HpySE526I	ACGT	3 cut(s)	75, 531, 620
Ksp22I	TGATCA	2 cut(s)	19, 876
Kzo9I	GATC	3 cut(s)	19, 588, 876
LguI	GCTCTTC	1 cut(s)	1442
LmnI	GCTCC	3 cut(s)	70, 1247, 1347
Lsp1109I	GCAGC	7 cut(s)	244, 256, 623, 761, 901, 1369, 1397
LweI	GCATC	3 cut(s)	490, 1281, 1397
MaeI	CTAG	3 cut(s)	947, 980, 1074
MaeII	ACGT	3 cut(s)	75, 531, 620
MaeIII	GTNAC	2 cut(s)	310, 1192
MalI	GATC	3 cut(s)	21, 590, 878
MboI	GATC	3 cut(s)	19, 588, 876
MboII	GAAGA	7 cut(s)	92, 708, 856, 935, 1144, 1321, 1429
MfeI	CAATTG	2 cut(s)	417, 858
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	2 cut(s)	151, 1344
MlsI	TGGCCA	2 cut(s)	992, 1264
MluNI	TGGCCA	2 cut(s)	992, 1264
MlyI	GAGTC	2 cut(s)	56, 432
MnlI	CCTC	5 cut(s)	677, 729, 1074, 1164, 1430
Mox20I	TGGCCA	2 cut(s)	992, 1264
Mph1103I	ATGCAT	1 cut(s)	512
MroXI	GAANNNNTTC	1 cut(s)	942
MscI	TGGCCA	2 cut(s)	992, 1264
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	1151
Msp20I	TGGCCA	2 cut(s)	992, 1264
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	2 cut(s)	935, 1046
MspR9I	CCNGG	1 cut(s)	935
MunI	CAATTG	2 cut(s)	417, 858
MwoI	GCNNNNNNNGC	7 cut(s)	266, 350, 604, 1240, 1300, 1362, 1394
NciI	CCSGG	1 cut(s)	935
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	3 cut(s)	19, 588, 876
NlaIV	GGNNCC	4 cut(s)	901, 1249, 1343, 1396
NmuCI	GTSAC	1 cut(s)	1192
NsiI	ATGCAT	1 cut(s)	512
NspI	RCATGY	4 cut(s)	147, 514, 1156, 1234
PagI	TCATGA	1 cut(s)	840
PciI	ACATGT	1 cut(s)	1152
PciSI	GCTCTTC	1 cut(s)	1442
PdmI	GAANNNNTTC	1 cut(s)	942
PinAI	ACCGGT	1 cut(s)	1045
PkrI	GCNGC	7 cut(s)	259, 271, 613, 751, 916, 1384, 1387
PleI	GAGTC	2 cut(s)	55, 431
PmaCI	CACGTG	1 cut(s)	532
PmlI	CACGTG	1 cut(s)	532
PpsI	GAGTC	2 cut(s)	55, 431
Ppu21I	YACGTR	1 cut(s)	532
PscI	ACATGT	1 cut(s)	1152
PsiI	TTATAA	2 cut(s)	1271, 1413
PspCI	CACGTG	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	176
PspN4I	GGNNCC	4 cut(s)	901, 1249, 1343, 1396
PspPI	GGNCC	2 cut(s)	709, 1092
PstI	CTGCAG	1 cut(s)	1387
PstNI	CAGNNNCTG	1 cut(s)	1391
PsuI	RGATCY	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	2 cut(s)	377, 1035
RsaNI	GTAC	2 cut(s)	376, 1034
RseI	CAYNNNNRTG	1 cut(s)	1151
SapI	GCTCTTC	1 cut(s)	1442
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	7 cut(s)	258, 270, 612, 750, 915, 1383, 1386
Sau3AI	GATC	3 cut(s)	19, 588, 876
Sau96I	GGNCC	2 cut(s)	709, 1092
SchI	GAGTC	2 cut(s)	56, 432
ScrFI	CCNGG	1 cut(s)	935
SduI	GDGCHC	2 cut(s)	151, 1344
SfaNI	GCATC	3 cut(s)	490, 1281, 1397
SfcI	CTRYAG	2 cut(s)	292, 1383
SinI	GGWCC	2 cut(s)	709, 1092
SmiI	ATTTAAAT	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	1151
SspI	AATATT	2 cut(s)	372, 523
SspMI	CTAG	3 cut(s)	947, 980, 1074
StyD4I	CCNGG	1 cut(s)	933
StyI	CCWWGG	2 cut(s)	903, 1377
SwaI	ATTTAAAT	1 cut(s)	405
TaaI	ACNGT	3 cut(s)	13, 133, 697
TaiI	ACGT	3 cut(s)	78, 534, 623
TaqI	TCGA	1 cut(s)	1330
TatI	WGTACW	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	18, 700
TseFI	GTSAC	1 cut(s)	1192
TseI	GCWGC	7 cut(s)	257, 269, 611, 749, 914, 1382, 1385
Tsp45I	GTSAC	1 cut(s)	1192
TspDTI	ATGAA	4 cut(s)	708, 857, 991, 1090
TspRI	CASTG	2 cut(s)	18, 700
VneI	GTGCAC	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	709, 1092
XapI	RAATTY	3 cut(s)	555, 729, 1125
XceI	RCATGY	4 cut(s)	147, 514, 1156, 1234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	942
XspI	CTAG	3 cut(s)	947, 980, 1074
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.