Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005525

Physical Location & Seq

Genomic Coordinates Forward (+)

63282979 .. 63287609

Gene Structure 4631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG464600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCACAAGATTTGTGGATGGATGTTATATTTGAACCTTGCTACCATTGGAGTTGGCTTCACTATAACCACCGCAAAAAGCTTGGTGGCTATACAGAAGTCGAGTTGTCATCGCAAAAATGGTGAAGATTCTCCATGCATGTTTTCCAACATTCCACATATGGTTGGATTTGGGCTTGTTGAAATTCTCTTATCACAACTCCAAAACTTTCACAAGTTGACTTGGCTCTCTAAGCTTGCAGCCATGATGTCTTTTGTCTATGCAACTATTGGAATTGGACTTTCTCTAGCTAAGATCATATCAGGGGATGGAGGAACAACATATGTTGCAGGGGCAGACCGGTCGTCATCGGAAAAAATTTGGATGATGTTTATAGCAGCCGGAGATATTGCATTTGCTTGCTCGTATTCTCTTATCCTGTTTGATATCCAAGTAAGCCATATCAACTACACCCTTTTTGCGGTTTTCCTATTTAGCTTGGGAAAAAACTCTTTCTTTTTGACATTCAATTGTGATTTTAAGGACACACTGAAGTCATCGCCACCAGAGAACAAAGTGATGAAGAGGGCTGTCGTTATAGGGGGTTTGACTATGGCATTACTCTTCATGATGTGTGGTAGCTTGGGTTATGCCGCGTTTGGCAACATCACACCCGAAAACCTGCTTGCTGGTTTTGGAGATGAGATGCCCTGGGCATTCTGGCTCCTGGATTTGGCTAATTTTTGCATTGTGGTGCACATAGTTGGTGCATTTCAGGTACTGTGCCAACCAGTGTTTCGCATTGTCGAACTGTTGGCTAGAAGAAGGTGGCCAAAATCCAATTTCATTACCAAAGAGAACCCGGTCATACTAGGGAAGATGAAGTTCAATATAAACATGTTTAGGCTGACATGGAGAACATCCTTTGTGGTGTTGGTGACTGTCATTGCCATGGCAATGCCATTCTTCATAGATATGCTGGCGCTTCTCGGTGCTATCGGGTACTGGCCTCTTATAGTTTATGTCCCAATAGAGATGCACATTGTGCAAAACAAGATTCAGAAACAAACCCTTCGCTGGTTCGGGCTCCAACTCCTGAGCTTTTTGTGCTTGCTTCTTTCCTTGGCCGCGGCATCTGGTTCCATTTATGGTCTGCAAAAGGGTCTCGGTGCGTACAAGCTCTTCCAAGTTAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

392

Amino Acids

43.66

Weight (kDa)

9.28

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	2 - 144	6.7e-21	Transmembrane amino acid transporter protein
Aa_trans	PF01490	172 - 378	6e-42	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35270 FvH4_2g35270 FvH4_2g35270 FvH4_2g35270
malus_domestica	MD08G1110600.v1.1 MD15G1089800.v1.1
prunus_persica	Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306641 RchiOBHm_Chr6g0306671
rosa_laevigata	RLG00000010775 RLG00000010777
rosa_multiflora	Rmu_sc0005201.1_g000004 Rmu_sc0005201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161560 Rroxscaffold_7G00161580
rosa_rugosa	Rorug06G0351500
rosa_samantha	Rh6AG463600 Rh6AG463800 Rh6BG437200 Rh6BG437300 Rh6CG477900 Rh6DG464600 Rh6DG464700
rosa_wichuraiana	Rw6G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	669
AccII	CGCG	2 cut(s)	635, 1109
AciI	CCGC	5 cut(s)	72, 461, 633, 1107, 1109
AcoI	YGGCCR	2 cut(s)	809, 1104
AcsI	RAATTY	2 cut(s)	183, 357
AcuI	CTGAAG	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	1024
AfaI	GTAC	3 cut(s)	759, 983, 1154
AfiI	CCNNNNNNNGG	3 cut(s)	460, 712, 1056
AflIII	ACRYGT	1 cut(s)	876
AgeI	ACCGGT	1 cut(s)	339
AgsI	TTSAA	4 cut(s)	34, 182, 508, 868
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	689, 705
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AluBI	AGCT	7 cut(s)	81, 235, 290, 477, 621, 1080, 1159
AluI	AGCT	7 cut(s)	81, 235, 290, 477, 621, 1080, 1159
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	1 cut(s)	1148
Alw44I	GTGCAC	1 cut(s)	734
AlwNI	CAGNNNCTG	1 cut(s)	760
AoxI	GGCC	3 cut(s)	809, 986, 1104
ApaLI	GTGCAC	1 cut(s)	734
ApeKI	GCWGC	2 cut(s)	239, 377
ApoI	RAATTY	2 cut(s)	183, 357
AsiGI	ACCGGT	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	964
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	2 cut(s)	134, 928
BaeGI	GKGCMC	1 cut(s)	738
BalI	TGGCCA	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	1068
BarI	GAAGNNNNNNTAC	2 cut(s)	1145, 1177
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	2 cut(s)	251, 389
BccI	CCATC	2 cut(s)	12, 302
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciT130I	CCWGG	2 cut(s)	691, 707
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	1 cut(s)	1148
BfaI	CTAG	3 cut(s)	287, 798, 851
BfoI	RGCGCY	1 cut(s)	965
BfuAI	ACCTGC	1 cut(s)	669
BisI	GCNGC	5 cut(s)	240, 378, 633, 1107, 1110
BlsI	GCNGC	5 cut(s)	241, 379, 634, 1108, 1111
Bme1390I	CCNGG	3 cut(s)	691, 707, 842
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmiI	GGNNCC	3 cut(s)	704, 1067, 1120
BmrFI	CCNGG	3 cut(s)	691, 707, 842
BmsI	GCATC	3 cut(s)	675, 1005, 1121
Bpu10I	CCTNAGC	1 cut(s)	1076
BpuMI	CCSGG	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	1148
BsaJI	CCNNGG	5 cut(s)	689, 690, 930, 1101, 1107
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	3 cut(s)	460, 712, 1056
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	2 cut(s)	770, 989
Bse3DI	GCAATG	2 cut(s)	924, 942
BseBI	CCWGG	2 cut(s)	691, 707
BseDI	CCNNGG	5 cut(s)	689, 690, 930, 1101, 1107
BseGI	GGATG	5 cut(s)	23, 27, 313, 369, 899
BseLI	CCNNNNNNNGG	3 cut(s)	460, 712, 1056
BseMI	GCAATG	2 cut(s)	924, 942
BseMII	CTCAG	1 cut(s)	1067
BseNI	ACTGG	2 cut(s)	770, 989
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	2 cut(s)	251, 389
Bsh1236I	CGCG	2 cut(s)	635, 1109
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	811, 988, 1106
BshTI	ACCGGT	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	738
BsiSI	CCGG	3 cut(s)	340, 381, 842
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	3 cut(s)	460, 712, 1056
BsmAI	GTCTC	1 cut(s)	1148
BsmFI	GGGAC	1 cut(s)	989
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	811, 988, 1106
Bso31I	GGTCTC	1 cut(s)	1148
Bsp1286I	GDGCHC	2 cut(s)	738, 1068
Bsp143I	GATC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	930
BspACI	CCGC	5 cut(s)	72, 461, 633, 1107, 1109
BspANI	GGCC	3 cut(s)	811, 988, 1106
BspCNI	CTCAG	1 cut(s)	1068
BspFNI	CGCG	2 cut(s)	635, 1109
BspHI	TCATGA	1 cut(s)	606
BspLI	GGNNCC	3 cut(s)	704, 1067, 1120
BspMI	ACCTGC	1 cut(s)	669
BspQI	GCTCTTC	1 cut(s)	1166
BspTNI	GGTCTC	1 cut(s)	1148
BsrDI	GCAATG	2 cut(s)	924, 942
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	770, 989
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	5 cut(s)	689, 690, 930, 1101, 1107
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	930, 1101
Bst2UI	CCWGG	2 cut(s)	691, 707
Bst4CI	ACNGT	3 cut(s)	762, 792, 922
Bst6I	CTCTTC	3 cut(s)	557, 608, 1166
BstAPI	GCANNNNNTGC	1 cut(s)	1024
BstC8I	GCNNGC	5 cut(s)	237, 400, 666, 960, 1091
BstDEI	CTNAG	3 cut(s)	231, 291, 1076
BstDSI	CCRYGG	2 cut(s)	930, 1107
BstF5I	GGATG	5 cut(s)	23, 27, 313, 369, 899
BstFNI	CGCG	2 cut(s)	635, 1109
BstH2I	RGCGCY	1 cut(s)	965
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	1148
BstMBI	GATC	1 cut(s)	294
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 1024, 1086
BstNI	CCWGG	2 cut(s)	691, 707
BstNSI	RCATGY	2 cut(s)	142, 880
BstSCI	CCNGG	3 cut(s)	689, 705, 840
BstSLI	GKGCMC	1 cut(s)	738
BstUI	CGCG	2 cut(s)	635, 1109
BstV1I	GCAGC	2 cut(s)	251, 389
BsuRI	GGCC	3 cut(s)	811, 988, 1106
BtgI	CCRYGG	2 cut(s)	930, 1107
BtgZI	GCGATG	2 cut(s)	95, 522
BtsCI	GGATG	5 cut(s)	23, 27, 313, 369, 899
BtsIMutI	CAGTG	2 cut(s)	527, 777
BveI	ACCTGC	1 cut(s)	669
Cac8I	GCNNGC	5 cut(s)	237, 400, 666, 960, 1091
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	606
CfoI	GCGC	1 cut(s)	964
Cfr10I	RCCGGY	1 cut(s)	339
Cfr42I	CCGCGG	1 cut(s)	1110
Csp6I	GTAC	3 cut(s)	758, 982, 1153
CspAI	ACCGGT	1 cut(s)	339
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	7 cut(s)	135, 139, 244, 607, 877, 891, 931
CviQI	GTAC	3 cut(s)	758, 982, 1153
DdeI	CTNAG	3 cut(s)	231, 291, 1076
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
DraIII	CACNNNGTG	1 cut(s)	1024
DriI	GACNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	809, 1104
Eam1104I	CTCTTC	3 cut(s)	557, 608, 1166
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	3 cut(s)	557, 608, 1166
Eco130I	CCWWGG	2 cut(s)	930, 1101
Eco24I	GRGCYC	1 cut(s)	1068
Eco31I	GGTCTC	1 cut(s)	1148
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	689, 705
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	930, 1101
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	1068
ErhI	CCWWGG	2 cut(s)	930, 1101
FaeI	CATG	7 cut(s)	138, 142, 247, 610, 880, 894, 934
FaqI	GGGAC	1 cut(s)	989
FatI	CATG	7 cut(s)	134, 138, 243, 606, 876, 890, 930
FauNDI	CATATG	2 cut(s)	159, 322
Fnu4HI	GCNGC	5 cut(s)	240, 378, 633, 1107, 1110
FokI	GGATG	5 cut(s)	30, 34, 320, 376, 886
FriOI	GRGCYC	1 cut(s)	1068
Fsp4HI	GCNGC	5 cut(s)	240, 378, 633, 1107, 1110
FspBI	CTAG	3 cut(s)	287, 798, 851
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	5 cut(s)	240, 378, 633, 1107, 1110
HaeII	RGCGCY	1 cut(s)	965
HaeIII	GGCC	3 cut(s)	811, 988, 1106
HapII	CCGG	3 cut(s)	340, 381, 842
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	7 cut(s)	138, 142, 247, 610, 880, 894, 934
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	2 cut(s)	79, 233
HinfI	GANTC	2 cut(s)	128, 1036
HpaII	CCGG	3 cut(s)	340, 381, 842
HphI	GGTGA	2 cut(s)	134, 928
Hpy166II	GTNNAC	2 cut(s)	219, 736
Hpy188I	TCNGA	2 cut(s)	352, 1041
Hpy188III	TCNNGA	2 cut(s)	607, 1075
Hpy8I	GTNNAC	2 cut(s)	219, 736
HpyAV	CCTTC	2 cut(s)	798, 1061
HpyCH4III	ACNGT	3 cut(s)	762, 792, 922
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 1024, 1086
HpyF3I	CTNAG	3 cut(s)	231, 291, 1076
Hsp92II	CATG	7 cut(s)	138, 142, 247, 610, 880, 894, 934
HspAI	GCGC	1 cut(s)	962
KspI	CCGCGG	1 cut(s)	1110
Kzo9I	GATC	1 cut(s)	294
LguI	GCTCTTC	1 cut(s)	1166
LmnI	GCTCC	2 cut(s)	708, 1071
Lsp1109I	GCAGC	2 cut(s)	251, 389
LweI	GCATC	3 cut(s)	675, 1005, 1121
MaeI	CTAG	3 cut(s)	287, 798, 851
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	7 cut(s)	137, 574, 595, 813, 868, 937, 1153
MfeI	CAATTG	1 cut(s)	508
MhlI	GDGCHC	2 cut(s)	738, 1068
MlsI	TGGCCA	1 cut(s)	811
MluCI	AATT	6 cut(s)	183, 273, 357, 508, 718, 820
MluNI	TGGCCA	1 cut(s)	811
MmeI	TCCRAC	3 cut(s)	145, 171, 1093
MnlI	CCTC	3 cut(s)	305, 558, 999
Mox20I	TGGCCA	1 cut(s)	811
Mph1103I	ATGCAT	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	811
MseI	TTAA	2 cut(s)	519, 1170
MslI	CAYNNNNRTG	4 cut(s)	731, 929, 935, 953
Msp20I	TGGCCA	1 cut(s)	811
MspA1I	CMGCKG	1 cut(s)	1109
MspI	CCGG	3 cut(s)	340, 381, 842
MspR9I	CCNGG	3 cut(s)	691, 707, 842
MunI	CAATTG	1 cut(s)	508
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	2 cut(s)	691, 707
MvnI	CGCG	2 cut(s)	635, 1109
MwoI	GCNNNNNNNGC	3 cut(s)	232, 1024, 1086
NciI	CCSGG	1 cut(s)	842
NcoI	CCATGG	1 cut(s)	930
NdeI	CATATG	2 cut(s)	159, 322
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	7 cut(s)	138, 142, 247, 610, 880, 894, 934
NlaIV	GGNNCC	3 cut(s)	704, 1067, 1120
NmuCI	GTSAC	1 cut(s)	916
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	2 cut(s)	142, 880
PagI	TCATGA	1 cut(s)	606
PasI	CCCWGGG	1 cut(s)	690
PciI	ACATGT	1 cut(s)	876
PciSI	GCTCTTC	1 cut(s)	1166
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	2 cut(s)	128, 1036
PfoI	TCCNGGA	1 cut(s)	705
PinAI	ACCGGT	1 cut(s)	339
PkrI	GCNGC	5 cut(s)	241, 379, 634, 1108, 1111
PscI	ACATGT	1 cut(s)	876
Psp6I	CCWGG	2 cut(s)	689, 705
PspGI	CCWGG	2 cut(s)	689, 705
PspN4I	GGNNCC	3 cut(s)	704, 1067, 1120
PstNI	CAGNNNCTG	1 cut(s)	760
RsaI	GTAC	3 cut(s)	759, 983, 1154
RsaNI	GTAC	3 cut(s)	758, 982, 1153
RseI	CAYNNNNRTG	4 cut(s)	731, 929, 935, 953
SacII	CCGCGG	1 cut(s)	1110
SapI	GCTCTTC	1 cut(s)	1166
SaqAI	TTAA	2 cut(s)	519, 1170
SatI	GCNGC	5 cut(s)	240, 378, 633, 1107, 1110
Sau3AI	GATC	1 cut(s)	294
ScrFI	CCNGG	3 cut(s)	691, 707, 842
SduI	GDGCHC	2 cut(s)	738, 1068
SfaNI	GCATC	3 cut(s)	675, 1005, 1121
Sfr303I	CCGCGG	1 cut(s)	1110
SgrBI	CCGCGG	1 cut(s)	1110
SmiMI	CAYNNNNRTG	4 cut(s)	731, 929, 935, 953
Sse9I	AATT	6 cut(s)	183, 273, 357, 508, 718, 820
SsiI	CCGC	5 cut(s)	72, 461, 633, 1107, 1109
SspMI	CTAG	3 cut(s)	287, 798, 851
StyD4I	CCNGG	3 cut(s)	689, 705, 840
StyI	CCWWGG	2 cut(s)	930, 1101
TaaI	ACNGT	3 cut(s)	762, 792, 922
TaqI	TCGA	2 cut(s)	101, 786
TasI	AATT	6 cut(s)	183, 273, 357, 508, 718, 820
TauI	GCSGC	3 cut(s)	635, 1109, 1112
TfiI	GAWTC	2 cut(s)	128, 1036
Tru1I	TTAA	2 cut(s)	519, 1170
Tru9I	TTAA	2 cut(s)	519, 1170
TscAI	CASTG	2 cut(s)	534, 777
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	2 cut(s)	239, 377
Tsp45I	GTSAC	1 cut(s)	916
TspDTI	ATGAA	5 cut(s)	575, 595, 814, 875, 937
TspRI	CASTG	2 cut(s)	534, 777
VneI	GTGCAC	1 cut(s)	734
XapI	RAATTY	2 cut(s)	183, 357
XceI	RCATGY	2 cut(s)	142, 880
XspI	CTAG	3 cut(s)	287, 798, 851
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.