Rmu_sc0005201.1_g000004

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005201.1
OG0005525
Physical Location & Seq
Reverse (-)
17183 .. 21297
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005201.1_g000004.1.cds

Sequence Viewer

Length: 981 bp
atggcgttgagtgaggttaaggctgaatttcaacgtgacttatctgaatctggtttgaacaatcctgcaaaaaacgtggaagctggagaagaactgctggtggatgatgatggcaaactcagaagaactgtcgtcataggaaaaaatttggatgatgcttgtagcagtgggagatattgcattgcttgctcgtatgctcttgtcctgtttgagattcaagacacactgaagtcatcaccactagaaaacaaagtgatgaagagggctgttgtgatagggagttcgactatgacattattcttcatgatgtatgctagcttgggttatgctgcgttcggcaacaagacaccggaaaacctgcttgctggttttggagatgagatgccctgggcattctggcttcttgatttggataatttttgtattgtgttgcacatagttggtgcatttcaggtactataccaaccagtgtttggcattgttgaactgttggctagtagaaggtggccaaagtccaatttcattaacaaagagaaccaagtcagactagggtacatgaagttcgatataaacatgtttaggctgacatggagaacagcctttgtggcgttggcgactttcattgacatggcaatgccattcttcacagacatgcttgcgcttcttggagctatcgggtaccggcctcttatagtttatgtcccaatactacagggccggctctgtctacataaatttattttttgtggccccctgaaatatgaggtcctaggcctgggcctgcttcgcctaggctcaaggccggccctgcccaatagagatgcatgttgcgcaaaacaagattcagaaacaaacccttcgtcgctggttcgggctccaactcctgagctttttgtgcttgcttctttcgcggcatctggttccatttatggtctgcataagggtctcggtgcgtacaagctcttcaaagttaaagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

326

Amino Acids

36.28

Weight (kDa)

8.34

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 832
Acc36I ACCTGC 1 cut(s) 366
Acc65I GGTACC 1 cut(s) 678
AccB1I GGYRCC 1 cut(s) 678
AccB7I CCANNNNNTGG 1 cut(s) 473
AccI GTMKAC 1 cut(s) 727
AccII CGCG 1 cut(s) 911
AciI CCGC 1 cut(s) 911
AcoI YGGCCR 1 cut(s) 506
AcsI RAATTY 3 cut(s) 26, 145, 734
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 4 cut(s) 456, 554, 680, 956
AfiI CCNNNNNNNGG 2 cut(s) 473, 775
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 5 cut(s) 32, 58, 218, 485, 967
AjnI CCWGG 2 cut(s) 386, 774
AluBI AGCT 5 cut(s) 83, 318, 671, 889, 961
AluI AGCT 5 cut(s) 83, 318, 671, 889, 961
Alw26I GTCTC 1 cut(s) 950
AoxI GGCC 8 cut(s) 506, 683, 715, 748, 772, 778, 800, 804
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 3 cut(s) 26, 145, 734
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
Asp718I GGTACC 1 cut(s) 678
AspA2I CCTAGG 2 cut(s) 769, 790
AspLEI GCGC 2 cut(s) 661, 833
AspS9I GGNCC 5 cut(s) 715, 749, 766, 778, 805
AsuHPI GGTGA 1 cut(s) 228
AsuNHI GCTAGC 1 cut(s) 314
AvaII GGWCC 1 cut(s) 766
AvrII CCTAGG 2 cut(s) 769, 790
BalI TGGCCA 1 cut(s) 508
BanI GGYRCC 1 cut(s) 678
BanII GRGCYC 1 cut(s) 877
BarI GAAGNNNNNNTAC 2 cut(s) 947, 979
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 388, 776
BcoDI GTCTC 1 cut(s) 950
BfaI CTAG 6 cut(s) 242, 315, 495, 548, 770, 791
BfmI CTRYAG 1 cut(s) 710
BfuAI ACCTGC 1 cut(s) 366
BglI GCCNNNNNGGC 1 cut(s) 605
BisI GCNGC 2 cut(s) 330, 912
BlnI CCTAGG 2 cut(s) 769, 790
BlsI GCNGC 2 cut(s) 331, 913
Bme1390I CCNGG 2 cut(s) 388, 776
Bme18I GGWCC 1 cut(s) 766
BmgT120I GGNCC 5 cut(s) 715, 749, 766, 778, 805
BmiI GGNNCC 4 cut(s) 680, 751, 876, 922
BmrFI CCNGG 2 cut(s) 388, 776
BmsI GCATC 4 cut(s) 145, 372, 811, 923
BmtI GCTAGC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 781
BsaI GGTCTC 1 cut(s) 950
BsaJI CCNNGG 5 cut(s) 386, 387, 769, 775, 790
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 775
Bse118I RCCGGY 3 cut(s) 681, 717, 802
Bse1I ACTGG 1 cut(s) 467
Bse3DI GCAATG 2 cut(s) 180, 639
BseBI CCWGG 2 cut(s) 388, 776
BseDI CCNNGG 5 cut(s) 386, 387, 769, 775, 790
BseGI GGATG 2 cut(s) 109, 157
BseLI CCNNNNNNNGG 2 cut(s) 473, 775
BseMI GCAATG 2 cut(s) 180, 639
BseMII CTCAG 2 cut(s) 133, 876
BseNI ACTGG 1 cut(s) 467
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 911
BshFI GGCC 8 cut(s) 508, 685, 717, 750, 774, 780, 802, 806
BshNI GGYRCC 1 cut(s) 678
BsiSI CCGG 4 cut(s) 350, 682, 718, 803
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 2 cut(s) 473, 775
BsmAI GTCTC 1 cut(s) 950
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 8 cut(s) 508, 685, 717, 750, 774, 780, 802, 806
Bso31I GGTCTC 1 cut(s) 950
Bsp1286I GDGCHC 1 cut(s) 877
BspACI CCGC 1 cut(s) 911
BspANI GGCC 8 cut(s) 508, 685, 717, 750, 774, 780, 802, 806
BspCNI CTCAG 2 cut(s) 132, 877
BspFNI CGCG 1 cut(s) 911
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 680, 751, 876, 922
BspMI ACCTGC 1 cut(s) 366
BspOI GCTAGC 1 cut(s) 318
BspQI GCTCTTC 1 cut(s) 968
BspT107I GGYRCC 1 cut(s) 678
BspTNI GGTCTC 1 cut(s) 950
BsrDI GCAATG 2 cut(s) 180, 639
BsrFI RCCGGY 3 cut(s) 681, 717, 802
BsrI ACTGG 1 cut(s) 467
BssAI RCCGGY 3 cut(s) 681, 717, 802
BssECI CCNNGG 5 cut(s) 386, 387, 769, 775, 790
BssT1I CCWWGG 2 cut(s) 769, 790
Bst2UI CCWGG 2 cut(s) 388, 776
Bst4CI ACNGT 2 cut(s) 130, 489
Bst6I CTCTTC 2 cut(s) 254, 968
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 8 cut(s) 187, 316, 363, 657, 719, 782, 804, 900
BstDEI CTNAG 2 cut(s) 119, 885
BstF5I GGATG 2 cut(s) 109, 157
BstFNI CGCG 1 cut(s) 911
BstHHI GCGC 2 cut(s) 661, 833
BstMAI GTCTC 1 cut(s) 950
BstMWI GCNNNNNNNGC 7 cut(s) 186, 605, 786, 808, 830, 895, 908
BstNI CCWGG 2 cut(s) 388, 776
BstNSI RCATGY 3 cut(s) 577, 655, 828
BstSCI CCNGG 2 cut(s) 386, 774
BstSFI CTRYAG 1 cut(s) 710
BstUI CGCG 1 cut(s) 911
BstV1I GCAGC 1 cut(s) 316
BsuRI GGCC 8 cut(s) 508, 685, 717, 750, 774, 780, 802, 806
BtsCI GGATG 2 cut(s) 109, 157
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 172, 224, 474
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 8 cut(s) 187, 316, 363, 657, 719, 782, 804, 900
CciI TCATGA 1 cut(s) 303
CfoI GCGC 2 cut(s) 661, 833
Cfr10I RCCGGY 3 cut(s) 681, 717, 802
Cfr13I GGNCC 5 cut(s) 715, 749, 766, 778, 805
Csp6I GTAC 4 cut(s) 455, 553, 679, 955
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 7 cut(s) 304, 556, 574, 588, 628, 652, 825
CviQI GTAC 4 cut(s) 455, 553, 679, 955
DdeI CTNAG 2 cut(s) 119, 885
EaeI YGGCCR 1 cut(s) 506
Eam1104I CTCTTC 2 cut(s) 254, 968
EarI CTCTTC 2 cut(s) 254, 968
Eco130I CCWWGG 2 cut(s) 769, 790
Eco147I AGGCCT 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 877
Eco31I GGTCTC 1 cut(s) 950
Eco47I GGWCC 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 766
EcoRII CCWGG 2 cut(s) 386, 774
EcoT14I CCWWGG 2 cut(s) 769, 790
EcoT22I ATGCAT 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 877
ErhI CCWWGG 2 cut(s) 769, 790
FaeI CATG 7 cut(s) 307, 559, 577, 591, 631, 655, 828
FaqI GGGAC 1 cut(s) 686
FatI CATG 7 cut(s) 303, 555, 573, 587, 627, 651, 824
FblI GTMKAC 1 cut(s) 727
Fnu4HI GCNGC 2 cut(s) 330, 912
FokI GGATG 2 cut(s) 116, 164
FriOI GRGCYC 1 cut(s) 877
FseI GGCCGGCC 1 cut(s) 806
Fsp4HI GCNGC 2 cut(s) 330, 912
FspBI CTAG 6 cut(s) 242, 315, 495, 548, 770, 791
FspI TGCGCA 1 cut(s) 832
GlaI GCGC 2 cut(s) 660, 832
GluI GCNGC 2 cut(s) 330, 912
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 8 cut(s) 508, 685, 717, 750, 774, 780, 802, 806
HapII CCGG 4 cut(s) 350, 682, 718, 803
HhaI GCGC 2 cut(s) 661, 833
Hin1II CATG 7 cut(s) 307, 559, 577, 591, 631, 655, 828
Hin6I GCGC 2 cut(s) 659, 831
HinP1I GCGC 2 cut(s) 659, 831
HinfI GANTC 3 cut(s) 47, 214, 842
HpaII CCGG 4 cut(s) 350, 682, 718, 803
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 4 cut(s) 46, 122, 545, 847
Hpy188III TCNNGA 4 cut(s) 218, 304, 404, 884
Hpy8I GTNNAC 1 cut(s) 728
Hpy99I CGWCG 1 cut(s) 865
HpyAV CCTTC 2 cut(s) 495, 867
HpyCH4III ACNGT 2 cut(s) 130, 489
HpyCH4IV ACGT 2 cut(s) 34, 75
HpyCH4V TGCA 6 cut(s) 68, 180, 433, 446, 824, 937
HpyF10VI GCNNNNNNNGC 7 cut(s) 186, 605, 786, 808, 830, 895, 908
HpyF3I CTNAG 2 cut(s) 119, 885
HpySE526I ACGT 2 cut(s) 34, 75
Hsp92II CATG 7 cut(s) 307, 559, 577, 591, 631, 655, 828
HspAI GCGC 2 cut(s) 659, 831
KpnI GGTACC 1 cut(s) 682
KroI GCCGGC 2 cut(s) 717, 802
KroNI GCCGGC 2 cut(s) 719, 804
LguI GCTCTTC 1 cut(s) 968
LmnI GCTCC 2 cut(s) 668, 880
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 4 cut(s) 145, 372, 811, 923
MaeI CTAG 6 cut(s) 242, 315, 495, 548, 770, 791
MaeII ACGT 2 cut(s) 34, 75
MaeIII GTNAC 1 cut(s) 35
MboII GAAGA 6 cut(s) 101, 135, 271, 292, 634, 955
MhlI GDGCHC 1 cut(s) 877
MlsI TGGCCA 1 cut(s) 508
MluCI AATT 5 cut(s) 26, 145, 415, 517, 734
MluNI TGGCCA 1 cut(s) 508
MmeI TCCRAC 1 cut(s) 902
MnlI CCTC 4 cut(s) 7, 255, 696, 757
Mox20I TGGCCA 1 cut(s) 508
Mph1103I ATGCAT 1 cut(s) 826
MroNI GCCGGC 2 cut(s) 717, 802
MscI TGGCCA 1 cut(s) 508
MseI TTAA 3 cut(s) 18, 525, 972
MslI CAYNNNNRTG 3 cut(s) 626, 632, 650
Msp20I TGGCCA 1 cut(s) 508
MspI CCGG 4 cut(s) 350, 682, 718, 803
MspR9I CCNGG 2 cut(s) 388, 776
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 2 cut(s) 388, 776
MvnI CGCG 1 cut(s) 911
MwoI GCNNNNNNNGC 7 cut(s) 186, 605, 786, 808, 830, 895, 908
NaeI GCCGGC 2 cut(s) 719, 804
NgoMIV GCCGGC 2 cut(s) 717, 802
NheI GCTAGC 1 cut(s) 314
NlaIII CATG 7 cut(s) 307, 559, 577, 591, 631, 655, 828
NlaIV GGNNCC 4 cut(s) 680, 751, 876, 922
NmuCI GTSAC 1 cut(s) 35
NsbI TGCGCA 1 cut(s) 832
NsiI ATGCAT 1 cut(s) 826
NspI RCATGY 3 cut(s) 577, 655, 828
PagI TCATGA 1 cut(s) 303
PasI CCCWGGG 1 cut(s) 387
PceI AGGCCT 1 cut(s) 774
PciI ACATGT 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 968
PctI GAATGC 1 cut(s) 392
PdiI GCCGGC 2 cut(s) 719, 804
PfeI GAWTC 3 cut(s) 47, 214, 842
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 2 cut(s) 331, 913
PpuMI RGGWCCY 1 cut(s) 766
PscI ACATGT 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 766
Psp6I CCWGG 2 cut(s) 386, 774
PspGI CCWGG 2 cut(s) 386, 774
PspN4I GGNNCC 4 cut(s) 680, 751, 876, 922
PspPI GGNCC 5 cut(s) 715, 749, 766, 778, 805
PspPPI RGGWCCY 1 cut(s) 766
PsrI GAACNNNNNNTAC 2 cut(s) 545, 577
RigI GGCCGGCC 1 cut(s) 806
RsaI GTAC 4 cut(s) 456, 554, 680, 956
RsaNI GTAC 4 cut(s) 455, 553, 679, 955
RseI CAYNNNNRTG 3 cut(s) 626, 632, 650
SapI GCTCTTC 1 cut(s) 968
SaqAI TTAA 3 cut(s) 18, 525, 972
SatI GCNGC 2 cut(s) 330, 912
Sau96I GGNCC 5 cut(s) 715, 749, 766, 778, 805
ScrFI CCNGG 2 cut(s) 388, 776
SduI GDGCHC 1 cut(s) 877
SfaNI GCATC 4 cut(s) 145, 372, 811, 923
SfcI CTRYAG 1 cut(s) 710
SinI GGWCC 1 cut(s) 766
SmiMI CAYNNNNRTG 3 cut(s) 626, 632, 650
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
Sse9I AATT 5 cut(s) 26, 145, 415, 517, 734
SseBI AGGCCT 1 cut(s) 774
SsiI CCGC 1 cut(s) 911
SspMI CTAG 6 cut(s) 242, 315, 495, 548, 770, 791
StuI AGGCCT 1 cut(s) 774
StyD4I CCNGG 2 cut(s) 386, 774
StyI CCWWGG 2 cut(s) 769, 790
TaaI ACNGT 2 cut(s) 130, 489
TaiI ACGT 2 cut(s) 37, 78
TaqI TCGA 2 cut(s) 284, 564
TasI AATT 5 cut(s) 26, 145, 415, 517, 734
TauI GCSGC 1 cut(s) 914
TfiI GAWTC 3 cut(s) 47, 214, 842
Tru1I TTAA 3 cut(s) 18, 525, 972
Tru9I TTAA 3 cut(s) 18, 525, 972
TscAI CASTG 3 cut(s) 172, 231, 474
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 5 cut(s) 272, 292, 511, 572, 610
TspRI CASTG 3 cut(s) 172, 231, 474
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 766
XapI RAATTY 3 cut(s) 26, 145, 734
XceI RCATGY 3 cut(s) 577, 655, 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmaJI CCTAGG 2 cut(s) 769, 790
XmiI GTMKAC 1 cut(s) 727
XspI CTAG 6 cut(s) 242, 315, 495, 548, 770, 791
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.