Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005525

Physical Location & Seq

Genomic Coordinates Reverse (-)

4296229 .. 4298802

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGCGATGAGACTGGGTTATGGCAGTGGCTTTTTGGAACAGTATGGACTGCCAGTGCCCATATAATCACAACATCAATAGGTGCAGGGGTGCTATCTCTAGCCTGGGCAATGGCCCAACTCGGATGGCTAGCTGGGGTTTTTATTCTCTTGTTCTGCACCTTCACTGCTGGCTACGCTTCCACTCTCTTAGCAGATTGTTACAGATATCCAGACCCAGTTTCAGGCAAGAGAAACTGCTCTTATATGGAGATTGTCAAAGTCTATTTAGGGGATGGAGGAACAACCTTTCTTGCAGGGGCGGATCAGTCGTCATCGGAAAAAATTTGGATGATGCTTATAGCAGTGGGAGATATTGCATTTGCTTGCTCTTATGCTCTTGTCCTGTTTGAGATCCAAGACACACTGAAGTCATCGCCACCAGAAAACAAAGTGATGAAGAGGGCTGTTGTGATAGGGGGTTCGACTATGTCATTATTCTTCATGATGTGTGCTAGCTTGGGTTATGCTGCGTTCGGCTACAAGACACCGGAAAACCTGCTTGCTGGTTTTGGAGATGAGATGCCCTGGCATTCTGGCTTCTTGATTTGGCTAATTTTTGTACTATGCCAACCAGTGTTTGGCATTGTTGAACTGTTGGCTAGTAGAAGGTGGCCAAAGTCCAATTTCATTAACAAAGAGAACCAAGTCAGACTAGGGTACATGAAGTTCGATATAAATATGTTTAGGCTGACATGGAGAACAACCTTTGTGGTGTTGGCGACTTTCATGGCCATGGCAATGCCATTCTTCACAGACATGCTTGCGCTTCTTGGAGCTATCGGGTACTGGCCTCTTATAGTTTATGTCCCAATAGAGATGCACATTGTGCAAAACAAGATTCAGAAACAAACCCTTCGCTGGTTCGGGCTCCAACTCCTGAGCTTTTTGTGCTTGCTTCTTTCCTTGGCTGCGGCATCTGGTTCCATTTATGGTCTGCATAAGGGTCTCGGTGCGTACAAGCTCTTCCCAGTTAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

340

Amino Acids

37.88

Weight (kDa)

8.39

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	13 - 95	1.6e-23	Transmembrane amino acid transporter protein
Aa_trans	PF01490	104 - 326	2.5e-37	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35270 FvH4_2g35270 FvH4_2g35270 FvH4_2g35270
malus_domestica	MD08G1110600.v1.1 MD15G1089800.v1.1
prunus_persica	Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306641 RchiOBHm_Chr6g0306671
rosa_laevigata	RLG00000010775 RLG00000010777
rosa_multiflora	Rmu_sc0005201.1_g000004 Rmu_sc0005201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161560 Rroxscaffold_7G00161580
rosa_rugosa	Rorug06G0351500
rosa_samantha	Rh6AG463600 Rh6AG463800 Rh6BG437200 Rh6BG437300 Rh6CG477900 Rh6DG464600 Rh6DG464700
rosa_wichuraiana	Rw6G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	546
AccB7I	CCANNNNNTGG	1 cut(s)	620
AciI	CCGC	2 cut(s)	302, 953
AclWI	GGATC	2 cut(s)	312, 388
AcoI	YGGCCR	2 cut(s)	653, 771
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	428
AdeI	CACNNNGTG	1 cut(s)	868
AfaI	GTAC	4 cut(s)	603, 701, 827, 998
AfiI	CCNNNNNNNGG	3 cut(s)	224, 620, 900
AgsI	TTSAA	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	104, 566
AluBI	AGCT	5 cut(s)	134, 498, 818, 924, 1003
AluI	AGCT	5 cut(s)	134, 498, 818, 924, 1003
Alw26I	GTCTC	2 cut(s)	5, 992
AlwI	GGATC	2 cut(s)	312, 388
AoxI	GGCC	4 cut(s)	114, 653, 771, 830
ApeKI	GCWGC	2 cut(s)	509, 950
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	115
AsuNHI	GCTAGC	2 cut(s)	130, 494
BaeGI	GKGCMC	1 cut(s)	61
BalI	TGGCCA	2 cut(s)	655, 773
BanII	GRGCYC	1 cut(s)	912
BarI	GAAGNNNNNNTAC	2 cut(s)	989, 1021
BbvI	GCAGC	2 cut(s)	496, 937
BccI	CCATC	2 cut(s)	120, 269
BciT130I	CCWGG	2 cut(s)	106, 568
BcoDI	GTCTC	2 cut(s)	5, 992
BfaI	CTAG	5 cut(s)	101, 131, 495, 642, 695
BfuAI	ACCTGC	1 cut(s)	546
BisI	GCNGC	3 cut(s)	510, 951, 954
BlsI	GCNGC	3 cut(s)	511, 952, 955
Bme1390I	CCNGG	2 cut(s)	106, 568
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	911, 964
BmrFI	CCNGG	2 cut(s)	106, 568
BmrI	ACTGGG	3 cut(s)	24, 212, 1004
BmsI	GCATC	4 cut(s)	324, 552, 849, 965
BmtI	GCTAGC	2 cut(s)	134, 498
BmuI	ACTGGG	3 cut(s)	24, 212, 1004
Bpu10I	CCTNAGC	1 cut(s)	920
BsaI	GGTCTC	1 cut(s)	992
BsaJI	CCNNGG	4 cut(s)	105, 566, 774, 945
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 620, 900
Bse1I	ACTGG	6 cut(s)	19, 54, 218, 614, 833, 1010
Bse3DI	GCAATG	2 cut(s)	117, 786
BseBI	CCWGG	2 cut(s)	106, 568
BseDI	CCNNGG	4 cut(s)	105, 566, 774, 945
BseGI	GGATG	3 cut(s)	131, 280, 336
BseLI	CCNNNNNNNGG	3 cut(s)	224, 620, 900
BseMI	GCAATG	2 cut(s)	117, 786
BseMII	CTCAG	1 cut(s)	911
BseNI	ACTGG	6 cut(s)	19, 54, 218, 614, 833, 1010
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	496, 937
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	2 cut(s)	105, 142
BshFI	GGCC	4 cut(s)	116, 655, 773, 832
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	833
BslI	CCNNNNNNNGG	3 cut(s)	224, 620, 900
BsmAI	GTCTC	2 cut(s)	5, 992
BsmFI	GGGAC	1 cut(s)	833
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	4 cut(s)	116, 655, 773, 832
Bso31I	GGTCTC	1 cut(s)	992
Bsp1286I	GDGCHC	2 cut(s)	61, 912
Bsp143I	GATC	2 cut(s)	304, 393
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	2 cut(s)	302, 953
BspANI	GGCC	4 cut(s)	116, 655, 773, 832
BspCNI	CTCAG	1 cut(s)	912
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	911, 964
BspMI	ACCTGC	1 cut(s)	546
BspOI	GCTAGC	2 cut(s)	134, 498
BspPI	GGATC	2 cut(s)	312, 388
BspQI	GCTCTTC	1 cut(s)	1010
BspTNI	GGTCTC	1 cut(s)	992
BsrDI	GCAATG	2 cut(s)	117, 786
BsrI	ACTGG	6 cut(s)	19, 54, 218, 614, 833, 1010
BssECI	CCNNGG	4 cut(s)	105, 566, 774, 945
BssMI	GATC	2 cut(s)	304, 393
BssT1I	CCWWGG	2 cut(s)	774, 945
Bst2UI	CCWGG	2 cut(s)	106, 568
Bst4CI	ACNGT	2 cut(s)	43, 636
Bst6I	CTCTTC	2 cut(s)	434, 1010
BstAPI	GCANNNNNTGC	1 cut(s)	868
BstC8I	GCNNGC	7 cut(s)	132, 172, 367, 496, 543, 804, 935
BstDEI	CTNAG	2 cut(s)	190, 920
BstDSI	CCRYGG	1 cut(s)	774
BstF5I	GGATG	3 cut(s)	131, 280, 336
BstHHI	GCGC	1 cut(s)	808
BstKTI	GATC	2 cut(s)	307, 396
BstMAI	GTCTC	2 cut(s)	5, 992
BstMBI	GATC	2 cut(s)	304, 393
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 868, 930
BstNI	CCWGG	2 cut(s)	106, 568
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	2 cut(s)	104, 566
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	496, 937
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	116, 655, 773, 832
BtgI	CCRYGG	1 cut(s)	774
BtgZI	GCGATG	2 cut(s)	21, 399
BtsCI	GGATG	3 cut(s)	131, 280, 336
BtsI	GCAGTG	3 cut(s)	32, 165, 351
BtsIMutI	CAGTG	6 cut(s)	32, 61, 165, 351, 404, 621
BveI	ACCTGC	1 cut(s)	546
Cac8I	GCNNGC	7 cut(s)	132, 172, 367, 496, 543, 804, 935
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	1 cut(s)	808
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	4 cut(s)	602, 700, 826, 997
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	6 cut(s)	484, 703, 735, 769, 775, 799
CviQI	GTAC	4 cut(s)	602, 700, 826, 997
DdeI	CTNAG	2 cut(s)	190, 920
DpnI	GATC	2 cut(s)	306, 395
DpnII	GATC	2 cut(s)	304, 393
DraIII	CACNNNGTG	1 cut(s)	868
EaeI	YGGCCR	2 cut(s)	653, 771
Eam1104I	CTCTTC	2 cut(s)	434, 1010
EarI	CTCTTC	2 cut(s)	434, 1010
EciI	GGCGGA	1 cut(s)	317
Eco130I	CCWWGG	2 cut(s)	774, 945
Eco24I	GRGCYC	1 cut(s)	912
Eco31I	GGTCTC	1 cut(s)	992
Eco32I	GATATC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	428
EcoRII	CCWGG	2 cut(s)	104, 566
EcoRV	GATATC	1 cut(s)	209
EcoT14I	CCWWGG	2 cut(s)	774, 945
EcoT38I	GRGCYC	1 cut(s)	912
ErhI	CCWWGG	2 cut(s)	774, 945
FaeI	CATG	6 cut(s)	487, 706, 738, 772, 778, 802
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	6 cut(s)	483, 702, 734, 768, 774, 798
Fnu4HI	GCNGC	3 cut(s)	510, 951, 954
FokI	GGATG	3 cut(s)	138, 287, 343
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	3 cut(s)	510, 951, 954
FspBI	CTAG	5 cut(s)	101, 131, 495, 642, 695
GlaI	GCGC	1 cut(s)	807
GluI	GCNGC	3 cut(s)	510, 951, 954
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	4 cut(s)	116, 655, 773, 832
HapII	CCGG	1 cut(s)	530
HhaI	GCGC	1 cut(s)	808
Hin1II	CATG	6 cut(s)	487, 706, 738, 772, 778, 802
Hin6I	GCGC	1 cut(s)	806
HinP1I	GCGC	1 cut(s)	806
HinfI	GANTC	1 cut(s)	880
HpaII	CCGG	1 cut(s)	530
Hpy188I	TCNGA	4 cut(s)	125, 319, 692, 885
Hpy188III	TCNNGA	4 cut(s)	212, 484, 583, 919
HpyAV	CCTTC	3 cut(s)	172, 642, 905
HpyCH4III	ACNGT	2 cut(s)	43, 636
HpyCH4V	TGCA	7 cut(s)	86, 159, 296, 359, 862, 871, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 868, 930
HpyF3I	CTNAG	2 cut(s)	190, 920
Hsp92II	CATG	6 cut(s)	487, 706, 738, 772, 778, 802
HspAI	GCGC	1 cut(s)	806
Kzo9I	GATC	2 cut(s)	304, 393
LguI	GCTCTTC	1 cut(s)	1010
LmnI	GCTCC	2 cut(s)	815, 915
Lsp1109I	GCAGC	2 cut(s)	496, 937
LweI	GCATC	4 cut(s)	324, 552, 849, 965
MaeI	CTAG	5 cut(s)	101, 131, 495, 642, 695
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	306, 395
MboI	GATC	2 cut(s)	304, 393
MboII	GAAGA	4 cut(s)	451, 472, 781, 997
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	2 cut(s)	61, 912
MlsI	TGGCCA	2 cut(s)	655, 773
MluCI	AATT	3 cut(s)	324, 594, 664
MluNI	TGGCCA	2 cut(s)	655, 773
MmeI	TCCRAC	1 cut(s)	937
MnlI	CCTC	3 cut(s)	272, 435, 843
Mox20I	TGGCCA	2 cut(s)	655, 773
MscI	TGGCCA	2 cut(s)	655, 773
MseI	TTAA	2 cut(s)	672, 1014
MslI	CAYNNNNRTG	3 cut(s)	773, 779, 797
Msp20I	TGGCCA	2 cut(s)	655, 773
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	106, 568
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	2 cut(s)	106, 568
MwoI	GCNNNNNNNGC	3 cut(s)	176, 868, 930
NcoI	CCATGG	1 cut(s)	774
NdeII	GATC	2 cut(s)	304, 393
NheI	GCTAGC	2 cut(s)	130, 494
NlaIII	CATG	6 cut(s)	487, 706, 738, 772, 778, 802
NlaIV	GGNNCC	2 cut(s)	911, 964
NspI	RCATGY	1 cut(s)	802
PagI	TCATGA	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	1010
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	880
PflFI	GACNNNGTC	1 cut(s)	469
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	3 cut(s)	511, 952, 955
Psp6I	CCWGG	2 cut(s)	104, 566
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	104, 566
PspN4I	GGNNCC	2 cut(s)	911, 964
PspPI	GGNCC	1 cut(s)	115
PsrI	GAACNNNNNNTAC	2 cut(s)	692, 724
PsuI	RGATCY	1 cut(s)	393
PsyI	GACNNNGTC	1 cut(s)	469
RsaI	GTAC	4 cut(s)	603, 701, 827, 998
RsaNI	GTAC	4 cut(s)	602, 700, 826, 997
RseI	CAYNNNNRTG	3 cut(s)	773, 779, 797
SapI	GCTCTTC	1 cut(s)	1010
SaqAI	TTAA	2 cut(s)	672, 1014
SatI	GCNGC	3 cut(s)	510, 951, 954
Sau3AI	GATC	2 cut(s)	304, 393
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	106, 568
SduI	GDGCHC	2 cut(s)	61, 912
SfaNI	GCATC	4 cut(s)	324, 552, 849, 965
SmiMI	CAYNNNNRTG	3 cut(s)	773, 779, 797
Sse9I	AATT	3 cut(s)	324, 594, 664
SsiI	CCGC	2 cut(s)	302, 953
SspMI	CTAG	5 cut(s)	101, 131, 495, 642, 695
StyD4I	CCNGG	2 cut(s)	104, 566
StyI	CCWWGG	2 cut(s)	774, 945
TaaI	ACNGT	2 cut(s)	43, 636
TaqI	TCGA	2 cut(s)	464, 711
TasI	AATT	3 cut(s)	324, 594, 664
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	1 cut(s)	956
TfiI	GAWTC	1 cut(s)	880
Tru1I	TTAA	2 cut(s)	672, 1014
Tru9I	TTAA	2 cut(s)	672, 1014
TscAI	CASTG	6 cut(s)	32, 61, 172, 351, 411, 621
TseI	GCWGC	2 cut(s)	509, 950
TspDTI	ATGAA	5 cut(s)	452, 472, 658, 719, 757
TspRI	CASTG	6 cut(s)	32, 61, 172, 351, 411, 621
Tth111I	GACNNNGTC	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	620
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XspI	CTAG	5 cut(s)	101, 131, 495, 642, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.