Amino acid permease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g35270 FvH4_2g35270 FvH4_2g35270 FvH4_2g35270 |
| malus_domestica | MD08G1110600.v1.1 MD15G1089800.v1.1 |
| prunus_persica | Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0306641 RchiOBHm_Chr6g0306671 |
| rosa_laevigata | RLG00000010775 RLG00000010777 |
| rosa_multiflora | Rmu_sc0005201.1_g000004 Rmu_sc0005201.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00161560 Rroxscaffold_7G00161580 |
| rosa_rugosa | Rorug06G0351500 |
| rosa_samantha | Rh6AG463600 Rh6AG463800 Rh6BG437200 Rh6BG437300 Rh6CG477900 Rh6DG464600 Rh6DG464700 |
| rosa_wichuraiana | Rw6G040400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 984 |
| AccII | CGCG | 1 cut(s) | 1424 |
| AccIII | TCCGGA | 1 cut(s) | 304 |
| AciI | CCGC | 4 cut(s) | 504, 740, 1422, 1424 |
| AcoI | YGGCCR | 2 cut(s) | 1124, 1419 |
| AcsI | RAATTY | 3 cut(s) | 26, 615, 762 |
| AcuI | CTGAAG | 1 cut(s) | 866 |
| AdeI | CACNNNGTG | 1 cut(s) | 1339 |
| AfaI | GTAC | 4 cut(s) | 74, 1074, 1298, 1469 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 317, 1027, 1371 |
| AflIII | ACRYGT | 1 cut(s) | 1191 |
| AgsI | TTSAA | 6 cut(s) | 32, 58, 383, 466, 614, 1183 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 313, 748 |
| AjnI | CCWGG | 4 cut(s) | 197, 1004, 1020, 1155 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1074, 1106 |
| AluBI | AGCT | 9 cut(s) | 83, 179, 513, 667, 722, 936, 1289, 1395, 1474 |
| AluI | AGCT | 9 cut(s) | 83, 179, 513, 667, 722, 936, 1289, 1395, 1474 |
| Alw21I | GWGCWC | 1 cut(s) | 1053 |
| Alw26I | GTCTC | 1 cut(s) | 1463 |
| Alw44I | GTGCAC | 1 cut(s) | 1049 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1075 |
| Aor13HI | TCCGGA | 1 cut(s) | 304 |
| AoxI | GGCC | 4 cut(s) | 207, 1124, 1301, 1419 |
| ApaLI | GTGCAC | 1 cut(s) | 1049 |
| ApeKI | GCWGC | 4 cut(s) | 260, 671, 782, 947 |
| ApoI | RAATTY | 3 cut(s) | 26, 615, 762 |
| AspS9I | GGNCC | 3 cut(s) | 208, 307, 742 |
| AsuHPI | GGTGA | 1 cut(s) | 1243 |
| AvaII | GGWCC | 2 cut(s) | 307, 742 |
| BaeGI | GKGCMC | 3 cut(s) | 154, 1053, 1321 |
| BalI | TGGCCA | 1 cut(s) | 1126 |
| BanII | GRGCYC | 1 cut(s) | 1383 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1460, 1492 |
| Bbv12I | GWGCWC | 1 cut(s) | 1053 |
| BbvI | GCAGC | 4 cut(s) | 247, 683, 794, 934 |
| BccI | CCATC | 3 cut(s) | 104, 213, 444 |
| BciT130I | CCWGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| BcoDI | GTCTC | 1 cut(s) | 1463 |
| BfaI | CTAG | 5 cut(s) | 194, 422, 719, 1113, 1166 |
| BfmI | CTRYAG | 1 cut(s) | 95 |
| BfuAI | ACCTGC | 1 cut(s) | 984 |
| BisI | GCNGC | 6 cut(s) | 261, 672, 783, 948, 1422, 1425 |
| BlsI | GCNGC | 6 cut(s) | 262, 673, 784, 949, 1423, 1426 |
| Bme1390I | CCNGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| Bme18I | GGWCC | 2 cut(s) | 307, 742 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 313, 748 |
| BmgT120I | GGNCC | 3 cut(s) | 208, 307, 742 |
| BmiI | GGNNCC | 4 cut(s) | 309, 1019, 1382, 1435 |
| BmrFI | CCNGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| BmrI | ACTGGG | 1 cut(s) | 305 |
| BmsI | GCATC | 4 cut(s) | 176, 990, 1320, 1436 |
| BmuI | ACTGGG | 1 cut(s) | 305 |
| BpmI | CTGGAG | 2 cut(s) | 105, 201 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1391 |
| BsaI | GGTCTC | 1 cut(s) | 1463 |
| BsaJI | CCNNGG | 6 cut(s) | 198, 1004, 1005, 1245, 1416, 1422 |
| BsaWI | WCCGGW | 1 cut(s) | 304 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 168, 198 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 317, 1027, 1371 |
| Bse118I | RCCGGY | 1 cut(s) | 227 |
| Bse1I | ACTGG | 5 cut(s) | 133, 311, 745, 1085, 1304 |
| Bse3DI | GCAATG | 3 cut(s) | 210, 1239, 1257 |
| BseAI | TCCGGA | 1 cut(s) | 304 |
| BseBI | CCWGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| BseDI | CCNNGG | 6 cut(s) | 198, 1004, 1005, 1245, 1416, 1422 |
| BseGI | GGATG | 6 cut(s) | 109, 224, 455, 459, 774, 1214 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 317, 1027, 1371 |
| BseMI | GCAATG | 3 cut(s) | 210, 1239, 1257 |
| BseMII | CTCAG | 1 cut(s) | 1382 |
| BseNI | ACTGG | 5 cut(s) | 133, 311, 745, 1085, 1304 |
| BseSI | GKGCMC | 3 cut(s) | 154, 1053, 1321 |
| BseXI | GCAGC | 4 cut(s) | 247, 683, 794, 934 |
| BsgI | GTGCAG | 2 cut(s) | 235, 576 |
| Bsh1236I | CGCG | 1 cut(s) | 1424 |
| BshFI | GGCC | 4 cut(s) | 209, 1126, 1303, 1421 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1053 |
| BsiSI | CCGG | 4 cut(s) | 65, 228, 305, 786 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 317, 1027, 1371 |
| BsmAI | GTCTC | 1 cut(s) | 1463 |
| BsmI | GAATGC | 1 cut(s) | 1010 |
| BsnI | GGCC | 4 cut(s) | 209, 1126, 1303, 1421 |
| Bso31I | GGTCTC | 1 cut(s) | 1463 |
| Bsp1286I | GDGCHC | 4 cut(s) | 154, 1053, 1321, 1383 |
| Bsp13I | TCCGGA | 1 cut(s) | 304 |
| Bsp143I | GATC | 2 cut(s) | 418, 726 |
| Bsp19I | CCATGG | 1 cut(s) | 1245 |
| BspACI | CCGC | 4 cut(s) | 504, 740, 1422, 1424 |
| BspANI | GGCC | 4 cut(s) | 209, 1126, 1303, 1421 |
| BspCNI | CTCAG | 1 cut(s) | 1383 |
| BspEI | TCCGGA | 1 cut(s) | 304 |
| BspFNI | CGCG | 1 cut(s) | 1424 |
| BspHI | TCATGA | 1 cut(s) | 921 |
| BspLI | GGNNCC | 4 cut(s) | 309, 1019, 1382, 1435 |
| BspMI | ACCTGC | 1 cut(s) | 984 |
| BspQI | GCTCTTC | 2 cut(s) | 1284, 1481 |
| BspTNI | GGTCTC | 1 cut(s) | 1463 |
| BsrDI | GCAATG | 3 cut(s) | 210, 1239, 1257 |
| BsrFI | RCCGGY | 1 cut(s) | 227 |
| BsrI | ACTGG | 5 cut(s) | 133, 311, 745, 1085, 1304 |
| BssAI | RCCGGY | 1 cut(s) | 227 |
| BssECI | CCNNGG | 6 cut(s) | 198, 1004, 1005, 1245, 1416, 1422 |
| BssMI | GATC | 2 cut(s) | 418, 726 |
| BssT1I | CCWWGG | 2 cut(s) | 1245, 1416 |
| Bst2UI | CCWGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| Bst4CI | ACNGT | 4 cut(s) | 136, 1077, 1107, 1237 |
| Bst6I | CTCTTC | 4 cut(s) | 872, 923, 1284, 1481 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1339 |
| BstC8I | GCNNGC | 8 cut(s) | 225, 229, 265, 669, 805, 981, 1275, 1406 |
| BstDEI | CTNAG | 4 cut(s) | 283, 663, 723, 1391 |
| BstDSI | CCRYGG | 2 cut(s) | 1245, 1422 |
| BstF5I | GGATG | 6 cut(s) | 109, 224, 455, 459, 774, 1214 |
| BstFNI | CGCG | 1 cut(s) | 1424 |
| BstKTI | GATC | 2 cut(s) | 421, 729 |
| BstMAI | GTCTC | 1 cut(s) | 1463 |
| BstMBI | GATC | 2 cut(s) | 418, 726 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 269, 664, 1339, 1401 |
| BstNI | CCWGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| BstNSI | RCATGY | 2 cut(s) | 574, 1195 |
| BstSCI | CCNGG | 4 cut(s) | 197, 1004, 1020, 1155 |
| BstSFI | CTRYAG | 1 cut(s) | 95 |
| BstSLI | GKGCMC | 3 cut(s) | 154, 1053, 1321 |
| BstUI | CGCG | 1 cut(s) | 1424 |
| BstV1I | GCAGC | 4 cut(s) | 247, 683, 794, 934 |
| BsuRI | GGCC | 4 cut(s) | 209, 1126, 1303, 1421 |
| BtgI | CCRYGG | 2 cut(s) | 1245, 1422 |
| BtgZI | GCGATG | 2 cut(s) | 527, 837 |
| BtsCI | GGATG | 6 cut(s) | 109, 224, 455, 459, 774, 1214 |
| BtsIMutI | CAGTG | 3 cut(s) | 318, 842, 1092 |
| BveI | ACCTGC | 1 cut(s) | 984 |
| Cac8I | GCNNGC | 8 cut(s) | 225, 229, 265, 669, 805, 981, 1275, 1406 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1075 |
| CciI | TCATGA | 1 cut(s) | 921 |
| Cfr10I | RCCGGY | 1 cut(s) | 227 |
| Cfr13I | GGNCC | 3 cut(s) | 208, 307, 742 |
| Cfr42I | CCGCGG | 1 cut(s) | 1425 |
| CsiI | ACCWGGT | 1 cut(s) | 1155 |
| Csp6I | GTAC | 4 cut(s) | 73, 1073, 1297, 1468 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 427, 462 |
| CviAII | CATG | 8 cut(s) | 35, 567, 571, 676, 922, 1192, 1206, 1246 |
| CviQI | GTAC | 4 cut(s) | 73, 1073, 1297, 1468 |
| DdeI | CTNAG | 4 cut(s) | 283, 663, 723, 1391 |
| DpnI | GATC | 2 cut(s) | 420, 728 |
| DpnII | GATC | 2 cut(s) | 418, 726 |
| DraIII | CACNNNGTG | 1 cut(s) | 1339 |
| DriI | GACNNNNNGTC | 2 cut(s) | 313, 748 |
| EaeI | YGGCCR | 2 cut(s) | 1124, 1419 |
| Eam1104I | CTCTTC | 4 cut(s) | 872, 923, 1284, 1481 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 313, 748 |
| EarI | CTCTTC | 4 cut(s) | 872, 923, 1284, 1481 |
| EciI | GGCGGA | 1 cut(s) | 755 |
| Eco130I | CCWWGG | 2 cut(s) | 1245, 1416 |
| Eco24I | GRGCYC | 1 cut(s) | 1383 |
| Eco31I | GGTCTC | 1 cut(s) | 1463 |
| Eco32I | GATATC | 1 cut(s) | 832 |
| Eco47I | GGWCC | 2 cut(s) | 307, 742 |
| Eco57I | CTGAAG | 1 cut(s) | 866 |
| EcoRII | CCWGG | 4 cut(s) | 197, 1004, 1020, 1155 |
| EcoRV | GATATC | 1 cut(s) | 832 |
| EcoT14I | CCWWGG | 2 cut(s) | 1245, 1416 |
| EcoT22I | ATGCAT | 1 cut(s) | 572 |
| EcoT38I | GRGCYC | 1 cut(s) | 1383 |
| ErhI | CCWWGG | 2 cut(s) | 1245, 1416 |
| FaeI | CATG | 8 cut(s) | 38, 570, 574, 679, 925, 1195, 1209, 1249 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 390, 422 |
| FatI | CATG | 8 cut(s) | 34, 566, 570, 675, 921, 1191, 1205, 1245 |
| FauNDI | CATATG | 1 cut(s) | 591 |
| Fnu4HI | GCNGC | 6 cut(s) | 261, 672, 783, 948, 1422, 1425 |
| FokI | GGATG | 6 cut(s) | 116, 231, 462, 466, 781, 1201 |
| FriOI | GRGCYC | 1 cut(s) | 1383 |
| Fsp4HI | GCNGC | 6 cut(s) | 261, 672, 783, 948, 1422, 1425 |
| FspBI | CTAG | 5 cut(s) | 194, 422, 719, 1113, 1166 |
| GluI | GCNGC | 6 cut(s) | 261, 672, 783, 948, 1422, 1425 |
| GsuI | CTGGAG | 2 cut(s) | 105, 201 |
| HaeIII | GGCC | 4 cut(s) | 209, 1126, 1303, 1421 |
| HapII | CCGG | 4 cut(s) | 65, 228, 305, 786 |
| Hin1II | CATG | 8 cut(s) | 38, 570, 574, 679, 925, 1195, 1209, 1249 |
| HincII | GTYRAC | 1 cut(s) | 651 |
| HindII | GTYRAC | 1 cut(s) | 651 |
| HindIII | AAGCTT | 2 cut(s) | 511, 665 |
| HinfI | GANTC | 3 cut(s) | 47, 560, 1351 |
| HpaII | CCGG | 4 cut(s) | 65, 228, 305, 786 |
| HphI | GGTGA | 1 cut(s) | 1243 |
| Hpy166II | GTNNAC | 2 cut(s) | 651, 1051 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 218, 757, 1286, 1356 |
| Hpy188III | TCNNGA | 3 cut(s) | 305, 922, 1390 |
| Hpy8I | GTNNAC | 2 cut(s) | 651, 1051 |
| HpyAV | CCTTC | 3 cut(s) | 265, 1113, 1376 |
| HpyCH4III | ACNGT | 4 cut(s) | 136, 1077, 1107, 1237 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 269, 664, 1339, 1401 |
| HpyF3I | CTNAG | 4 cut(s) | 283, 663, 723, 1391 |
| Hsp92II | CATG | 8 cut(s) | 38, 570, 574, 679, 925, 1195, 1209, 1249 |
| Kpn2I | TCCGGA | 1 cut(s) | 304 |
| KroI | GCCGGC | 1 cut(s) | 227 |
| KroNI | GCCGGC | 1 cut(s) | 229 |
| KspI | CCGCGG | 1 cut(s) | 1425 |
| Kzo9I | GATC | 2 cut(s) | 418, 726 |
| LguI | GCTCTTC | 2 cut(s) | 1284, 1481 |
| LmnI | GCTCC | 4 cut(s) | 176, 1023, 1286, 1386 |
| Lsp1109I | GCAGC | 4 cut(s) | 247, 683, 794, 934 |
| LweI | GCATC | 4 cut(s) | 176, 990, 1320, 1436 |
| MabI | ACCWGGT | 1 cut(s) | 1155 |
| MaeI | CTAG | 5 cut(s) | 194, 422, 719, 1113, 1166 |
| MaeIII | GTNAC | 2 cut(s) | 293, 1231 |
| MalI | GATC | 2 cut(s) | 420, 728 |
| MboI | GATC | 2 cut(s) | 418, 726 |
| MboII | GAAGA | 8 cut(s) | 101, 889, 910, 1128, 1183, 1252, 1271, 1468 |
| MhlI | GDGCHC | 4 cut(s) | 154, 1053, 1321, 1383 |
| MlsI | TGGCCA | 1 cut(s) | 1126 |
| MluCI | AATT | 7 cut(s) | 26, 388, 615, 705, 762, 1033, 1135 |
| MluNI | TGGCCA | 1 cut(s) | 1126 |
| MmeI | TCCRAC | 4 cut(s) | 427, 577, 603, 1408 |
| MnlI | CCTC | 5 cut(s) | 7, 13, 337, 873, 1314 |
| Mox20I | TGGCCA | 1 cut(s) | 1126 |
| Mph1103I | ATGCAT | 1 cut(s) | 572 |
| MroI | TCCGGA | 1 cut(s) | 304 |
| MroNI | GCCGGC | 1 cut(s) | 227 |
| MscI | TGGCCA | 1 cut(s) | 1126 |
| MseI | TTAA | 2 cut(s) | 387, 1485 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1046, 1244, 1250, 1268 |
| Msp20I | TGGCCA | 1 cut(s) | 1126 |
| MspA1I | CMGCKG | 1 cut(s) | 1424 |
| MspI | CCGG | 4 cut(s) | 65, 228, 305, 786 |
| MspR9I | CCNGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| Mva1269I | GAATGC | 1 cut(s) | 1010 |
| MvaI | CCWGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| MvnI | CGCG | 1 cut(s) | 1424 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 269, 664, 1339, 1401 |
| NaeI | GCCGGC | 1 cut(s) | 229 |
| NcoI | CCATGG | 1 cut(s) | 1245 |
| NdeI | CATATG | 1 cut(s) | 591 |
| NdeII | GATC | 2 cut(s) | 418, 726 |
| NgoMIV | GCCGGC | 1 cut(s) | 227 |
| NlaIII | CATG | 8 cut(s) | 38, 570, 574, 679, 925, 1195, 1209, 1249 |
| NlaIV | GGNNCC | 4 cut(s) | 309, 1019, 1382, 1435 |
| NmuCI | GTSAC | 1 cut(s) | 1231 |
| NsiI | ATGCAT | 1 cut(s) | 572 |
| NspI | RCATGY | 2 cut(s) | 574, 1195 |
| PagI | TCATGA | 1 cut(s) | 921 |
| PasI | CCCWGGG | 1 cut(s) | 1005 |
| PciI | ACATGT | 1 cut(s) | 1191 |
| PciSI | GCTCTTC | 2 cut(s) | 1284, 1481 |
| PctI | GAATGC | 1 cut(s) | 1010 |
| PdiI | GCCGGC | 1 cut(s) | 229 |
| PfeI | GAWTC | 3 cut(s) | 47, 560, 1351 |
| PfoI | TCCNGGA | 1 cut(s) | 1020 |
| PkrI | GCNGC | 6 cut(s) | 262, 673, 784, 949, 1423, 1426 |
| PscI | ACATGT | 1 cut(s) | 1191 |
| Psp6I | CCWGG | 4 cut(s) | 197, 1004, 1020, 1155 |
| PspGI | CCWGG | 4 cut(s) | 197, 1004, 1020, 1155 |
| PspN4I | GGNNCC | 4 cut(s) | 309, 1019, 1382, 1435 |
| PspPI | GGNCC | 3 cut(s) | 208, 307, 742 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1075 |
| RsaI | GTAC | 4 cut(s) | 74, 1074, 1298, 1469 |
| RsaNI | GTAC | 4 cut(s) | 73, 1073, 1297, 1468 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1046, 1244, 1250, 1268 |
| SacII | CCGCGG | 1 cut(s) | 1425 |
| SapI | GCTCTTC | 2 cut(s) | 1284, 1481 |
| SaqAI | TTAA | 2 cut(s) | 387, 1485 |
| SatI | GCNGC | 6 cut(s) | 261, 672, 783, 948, 1422, 1425 |
| Sau3AI | GATC | 2 cut(s) | 418, 726 |
| Sau96I | GGNCC | 3 cut(s) | 208, 307, 742 |
| ScrFI | CCNGG | 4 cut(s) | 199, 1006, 1022, 1157 |
| SduI | GDGCHC | 4 cut(s) | 154, 1053, 1321, 1383 |
| SexAI | ACCWGGT | 1 cut(s) | 1155 |
| SfaNI | GCATC | 4 cut(s) | 176, 990, 1320, 1436 |
| SfcI | CTRYAG | 1 cut(s) | 95 |
| Sfr303I | CCGCGG | 1 cut(s) | 1425 |
| SgrBI | CCGCGG | 1 cut(s) | 1425 |
| SinI | GGWCC | 2 cut(s) | 307, 742 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1046, 1244, 1250, 1268 |
| Sse9I | AATT | 7 cut(s) | 26, 388, 615, 705, 762, 1033, 1135 |
| SsiI | CCGC | 4 cut(s) | 504, 740, 1422, 1424 |
| SspMI | CTAG | 5 cut(s) | 194, 422, 719, 1113, 1166 |
| StyD4I | CCNGG | 4 cut(s) | 197, 1004, 1020, 1155 |
| StyI | CCWWGG | 2 cut(s) | 1245, 1416 |
| TaaI | ACNGT | 4 cut(s) | 136, 1077, 1107, 1237 |
| TaqI | TCGA | 3 cut(s) | 417, 533, 1101 |
| TasI | AATT | 7 cut(s) | 26, 388, 615, 705, 762, 1033, 1135 |
| TauI | GCSGC | 2 cut(s) | 1424, 1427 |
| TfiI | GAWTC | 3 cut(s) | 47, 560, 1351 |
| Tru1I | TTAA | 2 cut(s) | 387, 1485 |
| Tru9I | TTAA | 2 cut(s) | 387, 1485 |
| TscAI | CASTG | 3 cut(s) | 318, 849, 1092 |
| TseFI | GTSAC | 1 cut(s) | 1231 |
| TseI | GCWGC | 4 cut(s) | 260, 671, 782, 947 |
| Tsp45I | GTSAC | 1 cut(s) | 1231 |
| TspDTI | ATGAA | 5 cut(s) | 226, 890, 910, 1129, 1190 |
| TspRI | CASTG | 3 cut(s) | 318, 849, 1092 |
| VneI | GTGCAC | 1 cut(s) | 1049 |
| VpaK11BI | GGWCC | 2 cut(s) | 307, 742 |
| XapI | RAATTY | 3 cut(s) | 26, 615, 762 |
| XceI | RCATGY | 2 cut(s) | 574, 1195 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1153 |
| XspI | CTAG | 5 cut(s) | 194, 422, 719, 1113, 1166 |
| Zsp2I | ATGCAT | 1 cut(s) | 572 |