Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005525

Physical Location & Seq

Genomic Coordinates Reverse (-)

37674201 .. 37677520

Gene Structure 3320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G444800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGTGATCACTGTGCTTGATCATGAATTTCAGAATGAATTATGTGAAAGTGACTCTGAATATCCTCCCAAAAAGGTGGAAGATGGAGAAGTAGATGATGATGGCAAGCCCAAAAGAACTGGGACAGTGTGGACTGCATGTGCACATATAATCACAACATCAATAGGTGCTGGGGTGCTTTCTCTGGCATGGGCAATGGCTCAACTTGGTTGGGTTGCTGGCATTTTCATTCTCTTATTTTGCACCTTTGCTGCCCTTTATGCTGCCACTCTCCTAACAGATTGCTATAGATTTCCAGACCCAGTTACAGGCAAGAGAAATTACTCTTACATGGAAGCTGTCGAAGCCTATTTAGGTGGAAGAATGTACAAGTTCTGTGGATGGATGTTGTATTTAAATCTCGCTACAATCGGAATCGGCTTTACTATTACTACAGCTAAAAGCATGGTGGCTATACAGAAATCTAATTGCCATCGAAAAAATGGTGGTGATGACCCATGCATGTTCTCCAATATTCCACACGTGGTTGGGTTTGGAATTGTTGAAATTCTCTTATCTCAACTCCCAAACTTTCACAAGCTCTCTTGGCTCTCAAAGCTTGCAGCAATTACGTCTTTTGGTTATGCCTCTATCGGAATTGGACTTTCCCTTTCAAAAATCTTAACGGGGCATGGAGGAAAAACCTCTGTTGCAGGAGTGGACCCATCTTCATCCGATAAGATTTGGAGGATGTTTGCAGCAGCTGGAGATGTTGCATTTGCTTGTTCATATGCTCTGGTGCTTTTTGATATCCAAGACACACTCAAGTCATTGCCACCAGAGAACAAAGTGATGAAGAAGGCTGTCTCAATTGGGGGGTTAATTATGATAATATTCTTCATCATGTGTAGTACCTCGGGTTATGCTGCATTTGGTGACAAGACCCCAGAAAATCTGCTGGCTGGTTTTGGAGATGATATGGCCTTTTGGCTAGTTGATTTGGCCAATGTTTTTATTGTGGTGCACATAGTTGGTGCATATCAGGTACTTTGCCAACCAGTCTTCCGAATTGTTGAATTACTGGCTAGAAGGAGGTGGCCAAAATCCAAGTTCATAAACAGAGAGAACCCAATTAGATTTGGAAAGATCAGATTCAATATCAACATGTTTAGGCTGTCATGGAGAACAGCGTATGGGGTGGTGGTCACAATTGTTGCCATTGCTCTGCCTTTCTTCTCAGACATGCTTGCCCTCCTTGGAGCCATTGGCTACTGGCCACTTATAGTCTACATCCCACTGGAGATGCACATTGCGCAGAAAAAGATTGGGAAGCTAACAATTCGATGGTTTGGGCTCCAGTTGTTGAGCTTTCTGTGCTTGCTTCTTTCCTTGGCTGCAGCATCTGGTGCTATTCATGGTCTTTACAAGGGCCTCAATGCTTACAAGCTCTTCCAATTTAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

482

Amino Acids

53.09

Weight (kDa)

8.89

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35270 FvH4_2g35270 FvH4_2g35270 FvH4_2g35270
malus_domestica	MD08G1110600.v1.1 MD15G1089800.v1.1
prunus_persica	Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444800_v2.0.a1 Prupe.1G444900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306641 RchiOBHm_Chr6g0306671
rosa_laevigata	RLG00000010775 RLG00000010777
rosa_multiflora	Rmu_sc0005201.1_g000004 Rmu_sc0005201.1_g000006
rosa_roxburghii	Rroxscaffold_7G00161560 Rroxscaffold_7G00161580
rosa_rugosa	Rorug06G0351500
rosa_samantha	Rh6AG463600 Rh6AG463800 Rh6BG437200 Rh6BG437300 Rh6CG477900 Rh6DG464600 Rh6DG464700
rosa_wichuraiana	Rw6G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1293
AccI	GTMKAC	1 cut(s)	1266
AcoI	YGGCCR	3 cut(s)	981, 1076, 1253
AcsI	RAATTY	2 cut(s)	26, 546
AcvI	CACGTG	1 cut(s)	523
AfaI	GTAC	3 cut(s)	368, 892, 1026
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	2 cut(s)	520, 1143
AgsI	TTSAA	4 cut(s)	545, 654, 1055, 1135
AluBI	AGCT	8 cut(s)	338, 437, 580, 598, 743, 1312, 1347, 1426
AluI	AGCT	8 cut(s)	338, 437, 580, 598, 743, 1312, 1347, 1426
Alw21I	GWGCWC	2 cut(s)	145, 1005
Alw26I	GTCTC	1 cut(s)	850
Alw44I	GTGCAC	2 cut(s)	141, 1001
AlwNI	CAGNNNCTG	2 cut(s)	743, 1382
Ama87I	CYCGRG	1 cut(s)	895
AoxI	GGCC	5 cut(s)	960, 981, 1076, 1253, 1408
ApaLI	GTGCAC	2 cut(s)	141, 1001
ApeKI	GCWGC	8 cut(s)	251, 263, 602, 737, 740, 905, 1373, 1376
ApoI	RAATTY	2 cut(s)	26, 546
AspLEI	GCGC	1 cut(s)	1294
AspS9I	GGNCC	2 cut(s)	700, 1408
AsuHPI	GGTGA	3 cut(s)	16, 500, 926
AvaI	CYCGRG	1 cut(s)	895
AvaII	GGWCC	1 cut(s)	700
BaeGI	GKGCMC	2 cut(s)	145, 1005
BalI	TGGCCA	3 cut(s)	983, 1078, 1255
BanII	GRGCYC	1 cut(s)	1335
BbrPI	CACGTG	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	1033
Bbv12I	GWGCWC	2 cut(s)	145, 1005
BbvI	GCAGC	8 cut(s)	238, 250, 614, 749, 752, 892, 1360, 1388
BccI	CCATC	6 cut(s)	77, 95, 375, 480, 712, 1317
BclI	TGATCA	2 cut(s)	6, 19
BcoDI	GTCTC	1 cut(s)	850
BfaI	CTAG	2 cut(s)	971, 1065
BfmI	CTRYAG	3 cut(s)	286, 432, 1374
BisI	GCNGC	8 cut(s)	252, 264, 603, 738, 741, 906, 1374, 1377
BlsI	GCNGC	8 cut(s)	253, 265, 604, 739, 742, 907, 1375, 1378
Bme18I	GGWCC	1 cut(s)	700
BmeT110I	CYCGRG	1 cut(s)	895
BmgT120I	GGNCC	2 cut(s)	700, 1408
BmiI	GGNNCC	3 cut(s)	702, 1240, 1334
BmrI	ACTGGG	2 cut(s)	129, 296
BmsI	GCATC	2 cut(s)	1272, 1388
BmuI	ACTGGG	2 cut(s)	129, 296
BpiI	GAAGAC	1 cut(s)	1033
BpmI	CTGGAG	3 cut(s)	765, 1298, 1319
BpuEI	CTTGAG	1 cut(s)	788
BsaAI	YACGTR	1 cut(s)	523
BsaJI	CCNNGG	3 cut(s)	894, 1234, 1368
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	7 cut(s)	124, 302, 1037, 1065, 1256, 1281, 1336
Bse3DI	GCAATG	4 cut(s)	201, 809, 1197, 1287
BseDI	CCNNGG	3 cut(s)	894, 1234, 1368
BseGI	GGATG	5 cut(s)	386, 390, 710, 735, 1269
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	4 cut(s)	201, 809, 1197, 1287
BseMII	CTCAG	1 cut(s)	1230
BseNI	ACTGG	7 cut(s)	124, 302, 1037, 1065, 1256, 1281, 1336
BseSI	GKGCMC	2 cut(s)	145, 1005
BseXI	GCAGC	8 cut(s)	238, 250, 614, 749, 752, 892, 1360, 1388
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	5 cut(s)	962, 983, 1078, 1255, 1410
BsiHKAI	GWGCWC	2 cut(s)	145, 1005
BsiHKCI	CYCGRG	1 cut(s)	895
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	850
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	5 cut(s)	962, 983, 1078, 1255, 1410
BsoBI	CYCGRG	1 cut(s)	895
Bsp1286I	GDGCHC	3 cut(s)	145, 1005, 1335
Bsp1407I	TGTACA	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	6, 19, 1125
BspANI	GGCC	5 cut(s)	962, 983, 1078, 1255, 1410
BspCNI	CTCAG	1 cut(s)	1229
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	702, 1240, 1334
BspMAI	CTGCAG	1 cut(s)	1378
BspQI	GCTCTTC	1 cut(s)	1433
BsrDI	GCAATG	4 cut(s)	201, 809, 1197, 1287
BsrGI	TGTACA	1 cut(s)	366
BsrI	ACTGG	7 cut(s)	124, 302, 1037, 1065, 1256, 1281, 1336
BssECI	CCNNGG	3 cut(s)	894, 1234, 1368
BssMI	GATC	3 cut(s)	6, 19, 1125
BssT1I	CCWWGG	2 cut(s)	1234, 1368
Bst4CI	ACNGT	2 cut(s)	13, 127
Bst6I	CTCTTC	1 cut(s)	1433
BstAPI	GCANNNNNTGC	1 cut(s)	1385
BstAUI	TGTACA	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	6 cut(s)	107, 220, 600, 939, 1227, 1358
BstDEI	CTNAG	1 cut(s)	1216
BstF5I	GGATG	5 cut(s)	386, 390, 710, 735, 1269
BstHHI	GCGC	1 cut(s)	1294
BstKTI	GATC	3 cut(s)	9, 22, 1128
BstMAI	GTCTC	1 cut(s)	850
BstMBI	GATC	3 cut(s)	6, 19, 1125
BstMWI	GCNNNNNNNGC	7 cut(s)	260, 344, 586, 595, 1291, 1353, 1385
BstNSI	RCATGY	4 cut(s)	141, 505, 1147, 1225
BstSFI	CTRYAG	3 cut(s)	286, 432, 1374
BstSLI	GKGCMC	2 cut(s)	145, 1005
BstV1I	GCAGC	8 cut(s)	238, 250, 614, 749, 752, 892, 1360, 1388
BstV2I	GAAGAC	1 cut(s)	1033
BstXI	CCANNNNNNTGG	1 cut(s)	76
BsuRI	GGCC	5 cut(s)	962, 983, 1078, 1255, 1410
BtsCI	GGATG	5 cut(s)	386, 390, 710, 735, 1269
BtsIMutI	CAGTG	3 cut(s)	9, 132, 1274
Cac8I	GCNNGC	6 cut(s)	107, 220, 600, 939, 1227, 1358
CaiI	CAGNNNCTG	2 cut(s)	743, 1382
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	1294
Cfr13I	GGNCC	2 cut(s)	700, 1408
Csp6I	GTAC	3 cut(s)	367, 891, 1025
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviQI	GTAC	3 cut(s)	367, 891, 1025
DdeI	CTNAG	1 cut(s)	1216
DpnI	GATC	3 cut(s)	8, 21, 1127
DpnII	GATC	3 cut(s)	6, 19, 1125
DraI	TTTAAA	2 cut(s)	396, 1438
EaeI	YGGCCR	3 cut(s)	981, 1076, 1253
Eam1104I	CTCTTC	1 cut(s)	1433
EarI	CTCTTC	1 cut(s)	1433
Eco130I	CCWWGG	2 cut(s)	1234, 1368
Eco24I	GRGCYC	1 cut(s)	1335
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	700
Eco72I	CACGTG	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	895
EcoO109I	RGGNCCY	1 cut(s)	1408
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	1234, 1368
EcoT22I	ATGCAT	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	1335
ErhI	CCWWGG	2 cut(s)	1234, 1368
FaqI	GGGAC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	769
FbaI	TGATCA	2 cut(s)	6, 19
FblI	GTMKAC	1 cut(s)	1266
Fnu4HI	GCNGC	8 cut(s)	252, 264, 603, 738, 741, 906, 1374, 1377
FokI	GGATG	5 cut(s)	393, 397, 697, 742, 1256
FriOI	GRGCYC	1 cut(s)	1335
Fsp4HI	GCNGC	8 cut(s)	252, 264, 603, 738, 741, 906, 1374, 1377
FspBI	CTAG	2 cut(s)	971, 1065
FspI	TGCGCA	1 cut(s)	1293
GlaI	GCGC	1 cut(s)	1293
GluI	GCNGC	8 cut(s)	252, 264, 603, 738, 741, 906, 1374, 1377
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	3 cut(s)	765, 1298, 1319
HaeIII	GGCC	5 cut(s)	962, 983, 1078, 1255, 1410
HhaI	GCGC	1 cut(s)	1294
Hin6I	GCGC	1 cut(s)	1292
HinP1I	GCGC	1 cut(s)	1292
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	3 cut(s)	53, 414, 1131
HphI	GGTGA	3 cut(s)	16, 500, 926
Hpy166II	GTNNAC	5 cut(s)	132, 143, 700, 1003, 1267
Hpy188I	TCNGA	8 cut(s)	33, 58, 413, 635, 715, 1046, 1130, 1219
Hpy188III	TCNNGA	2 cut(s)	23, 296
Hpy8I	GTNNAC	5 cut(s)	132, 143, 700, 1003, 1267
HpyAV	CCTTC	2 cut(s)	832, 1062
HpyCH4III	ACNGT	2 cut(s)	13, 127
HpyCH4IV	ACGT	2 cut(s)	522, 611
HpyF10VI	GCNNNNNNNGC	7 cut(s)	260, 344, 586, 595, 1291, 1353, 1385
HpyF3I	CTNAG	1 cut(s)	1216
HpySE526I	ACGT	2 cut(s)	522, 611
HspAI	GCGC	1 cut(s)	1292
Ksp22I	TGATCA	2 cut(s)	6, 19
Kzo9I	GATC	3 cut(s)	6, 19, 1125
LguI	GCTCTTC	1 cut(s)	1433
LmnI	GCTCC	2 cut(s)	1238, 1338
Lsp1109I	GCAGC	8 cut(s)	238, 250, 614, 749, 752, 892, 1360, 1388
LweI	GCATC	2 cut(s)	1272, 1388
MaeI	CTAG	2 cut(s)	971, 1065
MaeII	ACGT	2 cut(s)	522, 611
MaeIII	GTNAC	4 cut(s)	50, 304, 914, 1183
MalI	GATC	3 cut(s)	8, 21, 1127
MboI	GATC	3 cut(s)	6, 19, 1125
MboII	GAAGA	8 cut(s)	92, 372, 699, 847, 868, 1033, 1204, 1420
MfeI	CAATTG	2 cut(s)	849, 1188
MhlI	GDGCHC	3 cut(s)	145, 1005, 1335
MlsI	TGGCCA	3 cut(s)	983, 1078, 1255
MluNI	TGGCCA	3 cut(s)	983, 1078, 1255
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	9 cut(s)	75, 637, 668, 694, 720, 904, 1065, 1241, 1421
Mox20I	TGGCCA	3 cut(s)	983, 1078, 1255
Mph1103I	ATGCAT	1 cut(s)	503
MscI	TGGCCA	3 cut(s)	983, 1078, 1255
MseI	TTAA	4 cut(s)	395, 662, 860, 1437
Msp20I	TGGCCA	3 cut(s)	983, 1078, 1255
MspA1I	CMGCKG	1 cut(s)	743
MunI	CAATTG	2 cut(s)	849, 1188
MwoI	GCNNNNNNNGC	7 cut(s)	260, 344, 586, 595, 1291, 1353, 1385
NdeI	CATATG	1 cut(s)	769
NdeII	GATC	3 cut(s)	6, 19, 1125
NlaIV	GGNNCC	3 cut(s)	702, 1240, 1334
NmuCI	GTSAC	3 cut(s)	50, 914, 1183
NsbI	TGCGCA	1 cut(s)	1293
NsiI	ATGCAT	1 cut(s)	503
NspI	RCATGY	4 cut(s)	141, 505, 1147, 1225
PagI	TCATGA	1 cut(s)	22
PciI	ACATGT	1 cut(s)	1143
PciSI	GCTCTTC	1 cut(s)	1433
PfeI	GAWTC	2 cut(s)	414, 1131
PkrI	GCNGC	8 cut(s)	253, 265, 604, 739, 742, 907, 1375, 1378
PleI	GAGTC	1 cut(s)	47
PmaCI	CACGTG	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	523
PscI	ACATGT	1 cut(s)	1143
PspCI	CACGTG	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	702, 1240, 1334
PspPI	GGNCC	2 cut(s)	700, 1408
PstI	CTGCAG	1 cut(s)	1378
PstNI	CAGNNNCTG	2 cut(s)	743, 1382
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	3 cut(s)	368, 892, 1026
RsaNI	GTAC	3 cut(s)	367, 891, 1025
SapI	GCTCTTC	1 cut(s)	1433
SaqAI	TTAA	4 cut(s)	395, 662, 860, 1437
SatI	GCNGC	8 cut(s)	252, 264, 603, 738, 741, 906, 1374, 1377
Sau3AI	GATC	3 cut(s)	6, 19, 1125
Sau96I	GGNCC	2 cut(s)	700, 1408
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	145, 1005, 1335
SfaNI	GCATC	2 cut(s)	1272, 1388
SfcI	CTRYAG	3 cut(s)	286, 432, 1374
SinI	GGWCC	1 cut(s)	700
SmiI	ATTTAAAT	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SspI	AATATT	2 cut(s)	514, 873
SspMI	CTAG	2 cut(s)	971, 1065
StyI	CCWWGG	2 cut(s)	1234, 1368
SwaI	ATTTAAAT	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	13, 127
TaiI	ACGT	2 cut(s)	525, 614
TaqI	TCGA	3 cut(s)	342, 475, 1321
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	414, 1131
Tru1I	TTAA	4 cut(s)	395, 662, 860, 1437
Tru9I	TTAA	4 cut(s)	395, 662, 860, 1437
TscAI	CASTG	3 cut(s)	16, 132, 1281
TseFI	GTSAC	3 cut(s)	50, 914, 1183
TseI	GCWGC	8 cut(s)	251, 263, 602, 737, 740, 905, 1373, 1376
Tsp45I	GTSAC	3 cut(s)	50, 914, 1183
TspDTI	ATGAA	9 cut(s)	39, 51, 217, 699, 756, 848, 868, 1081, 1382
TspRI	CASTG	3 cut(s)	16, 132, 1281
VneI	GTGCAC	2 cut(s)	141, 1001
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	2 cut(s)	26, 546
XceI	RCATGY	4 cut(s)	141, 505, 1147, 1225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	1266
XspI	CTAG	2 cut(s)	971, 1065
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.