Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Forward (+)

9225635 .. 9233433

Gene Structure 7799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1127100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5124 bp

ATGAAGCAGCAGCAGCAGAGCTCATCATCGTCCGAGGCGGTATCTTCGTCGTCGTCGTCGTCGTCGTCGTCCTCCGTCGCATCCATTTCGGCGGACCATTCGCAGCCCGCCACCTCATCGCTGAATTCGGGAGCCTCCGAAAAGCTTCCGTCGATACCGGCGGCGGCGCCGGAGGACCTTTCCGTGGCGTCCACGCCGTCCAGGGACGGCGGCGGGGCACAGGAGAGCGTGACCGTCGATCGGCGGGGCGAGTACTCGACGGTCTGCCGATGGACGGTCCAGAATTTTCCGAGAATCAAGGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTAGGGGGATACGATTGCCGGTTGCTAATATACCCTAAGGGTGACTCACAGGCGCTGCCGGGGTACATCTCGATATACCTCCAAATCATGGACCCGCGGGGCACCTCGTCGTCCAAATGGGACTGCTTCGCGAGTTATCGGCTCGCCATCGTCAACCTCGCCGACGATTCTAAGACCATTCATCGCGATTCTTGGCATCGGTTCTCGAGCAAGAAGAAATCTCACGGTTGGTGCGATTTTACGCCTTCTTCTACTGTCTTTGATTCGAAATTAGGTTATTTGTTCAATACCGACTCCGTTTTGATTACCGCCGATATCTTGATATTGAATGAGTCCGTTAATTTTACGCGAGATAGTAATAACAATAACAATGAGCTCCAATCGTCCGCCGGCTCGATGATGTCGGGTTCTGCGGTGGCCGGACCGGTTTCCGATGTGTTGAGTGGCAAGTTCACTTGGAAAGTTCAAAACTTTAGTTTGTTTAAGGAGATGATTAAGACTCAGAAGATAATGAGCCCGGTGTTTCCTGCTGGAGAGTGTAATTTGAGGATTAGTGTGTATCAGAGCTCGGTGAACGGCGTGGAGTATTTGTCAATGTGTTTGGAGAGCAAGGACACGGACAAGACGGTTGTGTTGTCTGATAGGAGTTGTTGGTGTTTGTTTCGAATGTCGGTGTTGAACCAGAAGCCTGGGACTAATCACATGCATAGGGACTCGTATGGGAGGTTTGCTGCTGATAATAAAAGTGGGGATAACACTAGTTTGGGGTGGAATGATTATATGAAGATGTCGGATTTTGTTGGGACTGAGTCGGGGTTTTTATTGGATGATACTGCGGTGTTTAGTACATCGTTTCATGTGATAAAGGAATTTAGTAGCTTTTCGAAGAATGGAGGATTAATTACGGGGAGGAGTGGTAGTGGGGCAAGGAAGTTGGATGGTCACATGGGGAAATTCAATTGGAGGATTGAAAACTTCACTAGGTTGAAGGATCTTTTAAAGAAGAGGAAGATAACGGGTCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGAAATCGGGACTGTCGGCTCATTGTTTATCCCCGAGGGCAGTCTCAACCACCATGCCACCTTTCAGTGTTTCTGGAAGTTACTGATGCACGGAACACTTCTAGTGACTGGAGTTGTTTTGTGAGCCATCGTTTGTCTGTTGTTAACCAGAGGATGGAGGAGAAGTCTGTCACGAAGGAGTCTCAGAATCGCTACTCCAAAGCAGCAAAGGATTGGGGCTGGCGTGAATTTGTGACGCTTACTAGTCTCTTTGATCAAGATTCAGGGTTTCTTGTTCAGGACACTGTTGTATTCTCAGCGGAGGTCCTTATATTGAAAGAGACATCAATAATGCAAGAGTTTACTGATCAGGATACTGAGTCAAGCAATGCTGGTTCACAGATTGATAAGAACGGAAAAAGAAGTTCCTTCACATGGAAGGTGGAGAATTTCCTGTCTTTTAAGGAAATAATGGAGACCCGAAAAATCTTTAGCAAATTCTTCCAAGCTGGTGGATGTGAACTTCGAATTGGTGTATATGAGTCCTTTGACACCATATGTATTTATTTGGAGAGTGACCAGTCTGTTGGTTGTGATCTGGATAAAAACTTTTGGGTTAGATACAGGATGGCTGTTGTGAATCAAAAGAACCCTGCTAAAACTGTGTGGAAGGAGTCATCTATATGTACAAAGACTTGGAACAATTCTGTTTTGCAATTCATGAAGGTGTCGGATATGTTGGAAGCAGATGCAGGGTTTCTTGTTCGTGATACTGTTGTTTTTGTCTGCGAAATATTGGACTGCTGTCCTTGGTTTGAGTTTTCAGATCTAGAGGTTTTTGCTTCGGAGGATGATCAGGATGCTTTGACAACAGATCCTGATGAGCTTGTTGATTCTGAAGACAGTGAAGGAATTGGTGGTGATGAAGAAGATATCTTTAGAAACCTACTTTCTAGAGCTGGATTTCACCTCACATACGGAGATAATCCTTCACAGCCACAGGTCACTTTACGAGAAAAACTTCTGATGGATGCTGGTGCTATTGCTGGTTTTCTGACTGGGCTCCGTGTTTATCTTGATGACCCTGCTAAAGTAAAACGGCTGCTTCTTCCGACCAAGCTTTCTGGTAGCAGTGATGGGATGAAGGTCATAAAGAATGATGAATCTTCCCCTAGTTTGATGAATTTGCTGATGGGAGTCAAAGTTCTACAGCAGGCTATCATTGATTTACTTTTGGACATTATGGTTGAGTGTTGCCAACCTACAGAAGGGACTTCATATGGCGACTTGTCTGATGCAAACTCAAAGTCTCCAGATGGAAGCGGAGCTGCTTGTCCGTTGCAACCTGATAGAGAAAATGGAGCTACAGAATCTTCGGATTGTCCTGCATGTGAAAGATTGGATACTGGCTCTGATGAAACTAGCAGCAGCACTTCGGCTGTTCAAAGCTCTGATGTGACTGGGATTGGTGTACCTAGAAAAACTCTTCCTGGAAAACCAATTTGTCCTCCAGAAACATCTGCCGGGGTGTCAGAAAATGTCACCCTTCGCTCAAAGACCAAGTGGCCAGAGCAATCAGAGGAGCTCTTAGGATTGATTGTAAACTCGTTGAGAGCTCTAGATGGAGCTGTTCCACAATGCTGTCCTGAACCAAGACGTCGGCCTCAGTCTGCACAAAAGATCGCTCTTGTACTGGATAAAGCGCCAAAGCATTTGCAGTCCGATCTTGTTGCTTTGGTGCCCAAGTTGGTTGAGCACTCAGAGCATCCACTTGCTGCTTTTGCACTTATAGAACGACTTCAAAAGCCAGATGCAGAACCTGCTTTGCGGACACCTGTTTTTGGTGCTCTGAGTCAACTGGACTGTGGCAGTGAAGTGTGGGAACGAGTTTTATCTCAATCTTTTGAGTTTTTGCGGGATTCAAATGATGAGCCTCTTGTTGCAACCATAGATTTTATATTTAAAGCTGCATCCCAGTGCCAACACCTCCCCGAAGCCGTCAGATCTGTCCGTGTTAGGCTAAAGAATTTGGGTGTCGACATTTCTCCTTGTGTTCTTGAATTTTTGAGTAGAACTGTAAATAGCTGGGGAGATGTTGCTGAAACCATACTTAGAGATATTGATTGTGATGATGAATTTGGTGACACTTGCTCGACATTGAATTCTGGTCTTTTCTTGTTTGGTGAACATGGACCGATTTCTGAACGGTTTCATCCGGTGGATGAGCAGGCTTTCCGCTCGAGTCGTCTCTTTTCTGACATTTACATCTTGATCGAGATGTTATCCATACCTTGTTTGGCAGTTGAAGCCTCTCAAACATTTGAGAGAGCTGTAGCTCGTGGTGCCATTGTGGCTCATTCTGTGGCCATGGTTTTGGAAAGGCGCCTTGCTCAAAGATTGAATCTTGATGCTAAATTTATTGGGGATAATTTTCAGCAGACCGATGTTGCAGCAGAGGGAGATGCCAATGAACAGCTGAGAATCCAACGAGACGATTTTACTTCAGTTCTTGGTCTTGCTGAGACATTGGCCCTCTCTAGAGATCCTTGTGTTAAGGGATTTGTGAAGATGCTGTATACATTATTATTTAAATGGTATGCTGATGAGACTTATCGAGGGAGAATGCTAAAGAGACTTGTAGATCTAGCCACTAGCACTACAGATAGTAACCATGAAGTTGATCTAGATTTGGATATCTTGGTGACGCTGGCTTCTGAAGAACAAGAAATTATCAGACCAGTTTTGAGTATGATGCGGGAGGTTGCTGAACTTGCAAATGTTGATCGTGCTGCTCTGTGGCACCAGTTATGTGCTAGTGAAGATGAAATAATTCGCATGCGTGAAGAAAAGAAAGCCGAAAATGCTACTATGGTTAAAGAAAAAGCTGTTATATTGCAAAAACTGAGTGAATCTGAGGCCACTAATACTCGTCTTAAGTCTGAAATGAAGGCTGAGATTGATTGCTTTGCTCGAGAAAAGAAGGAACTATCCGAACAAATACAAGAAGTTGAGAGTCAGCTTGAGTGGCACCGCTCTGAGCGAGATGATGAAATCAGAAGGCTCGCTACAGAGAGGAAAGTGCTTCAGGATCGCCTTCATGATGCAGAGACACAACTCTCTCAATTGAAGTCCCGAAAACGTGATGAATTGAAGAAATTGGTGAAAGAGAAAAATGCTCTTGCTGAAAGGTTGAAGAACGCTGAAGGTGCACGTAAAAGATTTGATGAAGAACTTAAACGGTATGCCACAGAGAATGTAACCCGAGAGGAAATTCGACAGTCTCTCGAAGATGAAGTACGGCGATTGACACAAACAGTGGGGCAAACAGAAGGAGAGAAACGGGAGAAAGAAGAGCAGGTTGCTCGGTATGAGGCGTATATTTATGAGATGGAATCAAAATTGCAGGCCTGCCAGCAAGATATTCACACCCTCTATGCTTCACTTAAGGAAGAAATGTCCCGACATGCTCCTTTGTATGGGGCGGGTTTGGAAGCTCTATCAATGAAGGAGTTGGAAACACTTTCAGGCATCCATGAAGAAGGCCTCAGGCAGATCCATACCCTTCAGCAGCAGCAGCGTAAAGGCAGTCCATCCAGCAGTCCTCTTGTGAGCCCTCACGCCCTCCAACACAATCATGGCTTGTATCCTTCGACGCCACCCCAGATGGCCGTTGGAATGCCTCCTTCGCTCATCCCAAATGGTGTCGGAATCCACAGCAATGGGCATGTGAATGGTAATGTTGGACCCTGGTTCAACCATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

1708

Amino Acids

190.61

Weight (kDa)

5.35

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	90 - 216	4.7e-20	MATH domain
MATH	PF00917	94 - 218	1.5e-07	MATH domain
MATH_2	PF22486	260 - 392	4.5e-19	MATH domain
MATH_2	PF22486	428 - 562	6.7e-29	MATH domain
MATH	PF00917	458 - 564	1.6e-09	MATH domain
MATH_2	PF22486	596 - 718	1.7e-12	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	3019
Acc36I	ACCTGC	2 cut(s)	3187, 4705
AccB1I	GGYRCC	7 cut(s)	166, 431, 3097, 3701, 3741, 4158, 4386
AccB7I	CCANNNNNTGG	2 cut(s)	418, 1534
AccBSI	CCGCTC	2 cut(s)	3597, 4392
AccI	GTMKAC	2 cut(s)	3396, 3935
AccII	CGCG	4 cut(s)	427, 461, 516, 679
AclWI	GGATC	5 cut(s)	1329, 2228, 3896, 4455, 4906
AcoI	YGGCCR	4 cut(s)	747, 2924, 3723, 5025
AcuI	CTGAAG	6 cut(s)	2277, 3846, 4095, 4427, 4581, 4907
AcyI	GRCGYC	5 cut(s)	167, 188, 3016, 3742, 5012
AfaI	GTAC	8 cut(s)	254, 323, 395, 1177, 2047, 2832, 3051, 4656
AfiI	CCNNNNNNNGG	9 cut(s)	184, 240, 274, 418, 1534, 1794, 2627, 3200, 4835
AflII	CTTAAG	2 cut(s)	4292, 4802
AgeI	ACCGGT	1 cut(s)	754
AhlI	ACTAGT	2 cut(s)	1088, 1622
AjnI	CCWGG	4 cut(s)	200, 1018, 2848, 5105
AjuI	GAANNNNNNNTTGG	2 cut(s)	1872, 1904
AloI	GAACNNNNNNTCC	2 cut(s)	2547, 2579
Alw21I	GWGCWC	8 cut(s)	23, 708, 899, 2946, 2977, 3117, 3208, 4570
Alw44I	GTGCAC	1 cut(s)	4566
AlwI	GGATC	5 cut(s)	1329, 2228, 3896, 4455, 4906
AlwNI	CAGNNNCTG	3 cut(s)	385, 2237, 3179
Ama87I	CYCGRG	5 cut(s)	535, 1413, 3598, 4329, 4620
AoxI	GGCC	9 cut(s)	747, 2924, 3020, 3723, 3888, 4275, 4764, 4900, 5025
ApaLI	GTGCAC	1 cut(s)	4566
ArsI	GACNNNNNNTTYG	2 cut(s)	2651, 2683
AseI	ATTAAT	1 cut(s)	1229
AsiGI	ACCGGT	1 cut(s)	754
Asp700I	GAANNNNTTC	5 cut(s)	144, 2379, 3156, 3567, 4188
AspLEI	GCGC	4 cut(s)	169, 385, 3064, 3744
AspS9I	GGNCC	9 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 3889, 5102
AsuC2I	CCSGG	3 cut(s)	390, 848, 2884
AsuHPI	GGTGA	9 cut(s)	383, 913, 2291, 2318, 2893, 3512, 3554, 4072, 4531
AsuII	TTCGAA	4 cut(s)	596, 994, 1214, 1885
AvaI	CYCGRG	5 cut(s)	535, 1413, 3598, 4329, 4620
AvaII	GGWCC	8 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 5102
AxyI	CCTNAGG	2 cut(s)	366, 4904
BaeGI	GKGCMC	5 cut(s)	220, 310, 434, 3102, 4570
BaeI	ACNNNNGTAYC	4 cut(s)	1152, 1185, 2121, 2154
BalI	TGGCCA	2 cut(s)	2926, 3725
BanI	GGYRCC	7 cut(s)	166, 431, 3097, 3701, 3741, 4158, 4386
BanII	GRGCYC	8 cut(s)	23, 708, 848, 899, 2424, 2946, 2977, 4973
BarI	GAAGNNNNNNTAC	4 cut(s)	4408, 4440, 4638, 4670
BauI	CACGAG	1 cut(s)	3696
BbsI	GAAGAC	1 cut(s)	2265
Bbv12I	GWGCWC	8 cut(s)	23, 708, 899, 2946, 2977, 3117, 3208, 4570
BceAI	ACGGC	7 cut(s)	181, 223, 922, 2474, 3341, 4673, 5012
BcgI	CGANNNNNNTGC	8 cut(s)	69, 103, 307, 341, 3071, 3105, 4703, 4737
BciT130I	CCWGG	4 cut(s)	202, 1020, 2850, 5107
BciVI	GTATCC	4 cut(s)	332, 1726, 2755, 5013
BclI	TGATCA	3 cut(s)	1633, 1726, 2212
BcnI	CCSGG	3 cut(s)	390, 848, 2884
BcuI	ACTAGT	2 cut(s)	1088, 1622
BfmI	CTRYAG	6 cut(s)	2567, 2622, 2724, 3690, 4017, 4425
BfoI	RGCGCY	4 cut(s)	170, 386, 3065, 3745
BfrI	CTTAAG	2 cut(s)	4292, 4802
BfuAI	ACCTGC	2 cut(s)	3187, 4705
BfuI	GTATCC	4 cut(s)	332, 1726, 2755, 5013
BglI	GCCNNNNNGGC	1 cut(s)	3710
BglII	AGATCT	3 cut(s)	2185, 3362, 4000
BmcAI	AGTACT	2 cut(s)	254, 323
Bme1390I	CCNGG	7 cut(s)	202, 390, 848, 1020, 2850, 2884, 5107
Bme18I	GGWCC	8 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 5102
BmeT110I	CYCGRG	5 cut(s)	535, 1413, 3598, 4329, 4620
BmgT120I	GGNCC	9 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 3889, 5102
BmrFI	CCNGG	7 cut(s)	202, 390, 848, 1020, 2850, 2884, 5107
BmrI	ACTGGG	3 cut(s)	2427, 2829, 3328
BmuI	ACTGGG	3 cut(s)	2427, 2829, 3328
BoxI	GACNNNNGTC	1 cut(s)	2163
BpiI	GAAGAC	1 cut(s)	2265
BpmI	CTGGAG	4 cut(s)	882, 1510, 2655, 2853
Bpu14I	TTCGAA	4 cut(s)	596, 994, 1214, 1885
BpuEI	CTTGAG	1 cut(s)	4400
BpuMI	CCSGG	3 cut(s)	390, 848, 2884
BsaAI	YACGTR	1 cut(s)	4571
BsaHI	GRCGYC	5 cut(s)	167, 188, 3016, 3742, 5012
BsaI	GGTCTC	1 cut(s)	1829
BsaWI	WCCGGW	2 cut(s)	754, 3574
Bsc4I	CCNNNNNNNGG	9 cut(s)	184, 240, 274, 418, 1534, 1794, 2627, 3200, 4835
Bse118I	RCCGGY	4 cut(s)	157, 348, 719, 754
Bse21I	CCTNAGG	2 cut(s)	366, 4904
Bse3DI	GCAATG	2 cut(s)	1753, 5083
BseBI	CCWGG	4 cut(s)	202, 1020, 2850, 5107
BseLI	CCNNNNNNNGG	9 cut(s)	184, 240, 274, 418, 1534, 1794, 2627, 3200, 4835
BseMI	GCAATG	2 cut(s)	1753, 5083
BseRI	GAGGAG	3 cut(s)	1255, 1553, 2954
BseSI	GKGCMC	5 cut(s)	220, 310, 434, 3102, 4570
BseYI	CCCAGC	1 cut(s)	3444
BsgI	GTGCAG	1 cut(s)	3015
Bsh1236I	CGCG	4 cut(s)	427, 461, 516, 679
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	9 cut(s)	749, 2926, 3022, 3725, 3890, 4277, 4766, 4902, 5027
BshNI	GGYRCC	7 cut(s)	166, 431, 3097, 3701, 3741, 4158, 4386
BshTI	ACCGGT	1 cut(s)	754
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	8 cut(s)	23, 708, 899, 2946, 2977, 3117, 3208, 4570
BsiHKCI	CYCGRG	5 cut(s)	535, 1413, 3598, 4329, 4620
BslFI	GGGAC	9 cut(s)	218, 464, 1036, 1055, 1147, 1403, 2644, 4474, 4801
BslI	CCNNNNNNNGG	9 cut(s)	184, 240, 274, 418, 1534, 1794, 2627, 3200, 4835
BsmBI	CGTCTC	2 cut(s)	3611, 3843
BsmFI	GGGAC	9 cut(s)	218, 464, 1036, 1055, 1147, 1403, 2644, 4474, 4801
BsmI	GAATGC	2 cut(s)	3987, 5040
BsnI	GGCC	9 cut(s)	749, 2926, 3022, 3725, 3890, 4277, 4766, 4902, 5027
Bso31I	GGTCTC	1 cut(s)	1829
BsoBI	CYCGRG	5 cut(s)	535, 1413, 3598, 4329, 4620
Bsp119I	TTCGAA	4 cut(s)	596, 994, 1214, 1885
Bsp1407I	TGTACA	1 cut(s)	2045
Bsp19I	CCATGG	1 cut(s)	3726
Bsp68I	TCGCGA	2 cut(s)	461, 516
BspANI	GGCC	9 cut(s)	749, 2926, 3022, 3725, 3890, 4277, 4766, 4902, 5027
BspFNI	CGCG	4 cut(s)	427, 461, 516, 679
BspHI	TCATGA	2 cut(s)	2079, 4456
BspMI	ACCTGC	2 cut(s)	3187, 4705
BspPI	GGATC	5 cut(s)	1329, 2228, 3896, 4455, 4906
BspQI	GCTCTTC	1 cut(s)	4704
BspT104I	TTCGAA	4 cut(s)	596, 994, 1214, 1885
BspT107I	GGYRCC	7 cut(s)	166, 431, 3097, 3701, 3741, 4158, 4386
BspTI	CTTAAG	2 cut(s)	4292, 4802
BspTNI	GGTCTC	1 cut(s)	1829
BsrBI	CCGCTC	2 cut(s)	3597, 4392
BsrDI	GCAATG	2 cut(s)	1753, 5083
BsrFI	RCCGGY	4 cut(s)	157, 348, 719, 754
BsrGI	TGTACA	1 cut(s)	2045
BssAI	RCCGGY	4 cut(s)	157, 348, 719, 754
BssNAI	GTATAC	1 cut(s)	3936
BssNI	GRCGYC	5 cut(s)	167, 188, 3016, 3742, 5012
BssSI	CACGAG	1 cut(s)	3696
BssT1I	CCWWGG	2 cut(s)	2168, 3726
Bst1107I	GTATAC	1 cut(s)	3936
Bst2BI	CACGAG	1 cut(s)	3696
Bst2UI	CCWGG	4 cut(s)	202, 1020, 2850, 5107
Bst6I	CTCTTC	3 cut(s)	1328, 2850, 4704
BstACI	GRCGYC	5 cut(s)	167, 188, 3016, 3742, 5012
BstAFI	CTTAAG	2 cut(s)	4292, 4802
BstAPI	GCANNNNNTGC	1 cut(s)	3179
BstAUI	TGTACA	1 cut(s)	2045
BstBAI	YACGTR	1 cut(s)	4571
BstBI	TTCGAA	4 cut(s)	596, 994, 1214, 1885
BstDSI	CCRYGG	3 cut(s)	183, 425, 3726
BstENI	CCTNNNNNAGG	1 cut(s)	2625
BstFNI	CGCG	4 cut(s)	427, 461, 516, 679
BstH2I	RGCGCY	4 cut(s)	170, 386, 3065, 3745
BstHHI	GCGC	4 cut(s)	169, 385, 3064, 3744
BstMCI	CGRYCG	1 cut(s)	241
BstNI	CCWGG	4 cut(s)	202, 1020, 2850, 5107
BstNSI	RCATGY	5 cut(s)	1036, 2751, 4198, 4826, 5087
BstPAI	GACNNNNGTC	1 cut(s)	2163
BstSCI	CCNGG	7 cut(s)	200, 388, 846, 1018, 2848, 2882, 5105
BstSFI	CTRYAG	6 cut(s)	2567, 2622, 2724, 3690, 4017, 4425
BstSLI	GKGCMC	5 cut(s)	220, 310, 434, 3102, 4570
BstUI	CGCG	4 cut(s)	427, 461, 516, 679
BstV2I	GAAGAC	1 cut(s)	2265
BstX2I	RGATCY	7 cut(s)	1321, 2185, 2233, 3362, 3901, 4000, 4911
BstXI	CCANNNNNNTGG	5 cut(s)	1019, 1871, 1946, 3733, 5078
BstYI	RGATCY	7 cut(s)	1321, 2185, 2233, 3362, 3901, 4000, 4911
BstZ17I	GTATAC	1 cut(s)	3936
Bsu36I	CCTNAGG	2 cut(s)	366, 4904
BsuI	GTATCC	4 cut(s)	332, 1726, 2755, 5013
BsuRI	GGCC	9 cut(s)	749, 2926, 3022, 3725, 3890, 4277, 4766, 4902, 5027
BtgI	CCRYGG	3 cut(s)	183, 425, 3726
BtgZI	GCGATG	2 cut(s)	102, 497
BtsI	GCAGTG	2 cut(s)	2497, 3235
BtsIMutI	CAGTG	8 cut(s)	308, 1452, 1662, 2269, 2497, 3235, 3341, 4680
BtuMI	TCGCGA	2 cut(s)	461, 516
BveI	ACCTGC	2 cut(s)	3187, 4705
CaiI	CAGNNNCTG	3 cut(s)	385, 2237, 3179
CciI	TCATGA	2 cut(s)	2079, 4456
CfoI	GCGC	4 cut(s)	169, 385, 3064, 3744
Cfr10I	RCCGGY	4 cut(s)	157, 348, 719, 754
Cfr13I	GGNCC	9 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 3889, 5102
Cfr42I	CCGCGG	1 cut(s)	428
CpoI	CGGWCCG	1 cut(s)	752
CseI	GACGC	4 cut(s)	177, 1624, 4072, 5020
Csp6I	GTAC	8 cut(s)	253, 322, 394, 1176, 2046, 2831, 3050, 4655
CspAI	ACCGGT	1 cut(s)	754
CspI	CGGWCCG	1 cut(s)	752
CviQI	GTAC	8 cut(s)	253, 322, 394, 1176, 2046, 2831, 3050, 4655
DinI	GGCGCC	2 cut(s)	168, 3743
DraI	TTTAAA	3 cut(s)	1329, 3322, 3949
EaeI	YGGCCR	4 cut(s)	747, 2924, 3723, 5025
Eam1104I	CTCTTC	3 cut(s)	1328, 2850, 4704
EarI	CTCTTC	3 cut(s)	1328, 2850, 4704
EciI	GGCGGA	2 cut(s)	107, 706
Ecl136II	GAGCTC	5 cut(s)	21, 706, 897, 2944, 2975
Eco130I	CCWWGG	2 cut(s)	2168, 3726
Eco147I	AGGCCT	2 cut(s)	4766, 4902
Eco24I	GRGCYC	8 cut(s)	23, 708, 848, 899, 2424, 2946, 2977, 4973
Eco31I	GGTCTC	1 cut(s)	1829
Eco32I	GATATC	3 cut(s)	646, 2293, 4054
Eco47I	GGWCC	8 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 5102
Eco53kI	GAGCTC	5 cut(s)	21, 706, 897, 2944, 2975
Eco57I	CTGAAG	6 cut(s)	2277, 3846, 4095, 4427, 4581, 4907
Eco81I	CCTNAGG	2 cut(s)	366, 4904
Eco88I	CYCGRG	5 cut(s)	535, 1413, 3598, 4329, 4620
EcoICRI	GAGCTC	5 cut(s)	21, 706, 897, 2944, 2975
EcoNI	CCTNNNNNAGG	1 cut(s)	2625
EcoO109I	RGGNCCY	2 cut(s)	175, 1684
EcoRI	GAATTC	2 cut(s)	124, 3520
EcoRII	CCWGG	4 cut(s)	200, 1018, 2848, 5105
EcoRV	GATATC	3 cut(s)	646, 2293, 4054
EcoT14I	CCWWGG	2 cut(s)	2168, 3726
EcoT22I	ATGCAT	1 cut(s)	1038
EcoT38I	GRGCYC	8 cut(s)	23, 708, 848, 899, 2424, 2946, 2977, 4973
EgeI	GGCGCC	2 cut(s)	168, 3743
EheI	GGCGCC	2 cut(s)	168, 3743
ErhI	CCWWGG	2 cut(s)	2168, 3726
Esp3I	CGTCTC	2 cut(s)	3611, 3843
FaqI	GGGAC	9 cut(s)	218, 464, 1036, 1055, 1147, 1403, 2644, 4474, 4801
FauI	CCCGC	8 cut(s)	115, 206, 237, 420, 432, 3267, 4107, 4834
FauNDI	CATATG	2 cut(s)	1916, 2638
FbaI	TGATCA	3 cut(s)	1633, 1726, 2212
FblI	GTMKAC	2 cut(s)	3396, 3935
FriOI	GRGCYC	8 cut(s)	23, 708, 848, 899, 2424, 2946, 2977, 4973
GlaI	GCGC	4 cut(s)	168, 384, 3063, 3743
GsaI	CCCAGC	1 cut(s)	3448
GsuI	CTGGAG	4 cut(s)	882, 1510, 2655, 2853
HaeII	RGCGCY	4 cut(s)	170, 386, 3065, 3745
HaeIII	GGCC	9 cut(s)	749, 2926, 3022, 3725, 3890, 4277, 4766, 4902, 5027
HgaI	GACGC	4 cut(s)	177, 1624, 4072, 5020
HhaI	GCGC	4 cut(s)	169, 385, 3064, 3744
Hin1I	GRCGYC	5 cut(s)	167, 188, 3016, 3742, 5012
Hin6I	GCGC	4 cut(s)	167, 383, 3062, 3742
HinP1I	GCGC	4 cut(s)	167, 383, 3062, 3742
HincII	GTYRAC	4 cut(s)	484, 1525, 3215, 3397
HindII	GTYRAC	4 cut(s)	484, 1525, 3215, 3397
HindIII	AAGCTT	2 cut(s)	143, 2477
HpaI	GTTAAC	1 cut(s)	1525
HphI	GGTGA	9 cut(s)	383, 913, 2291, 2318, 2893, 3512, 3554, 4072, 4531
HpyCH4IV	ACGT	3 cut(s)	3016, 4498, 4570
HpySE526I	ACGT	3 cut(s)	3016, 4498, 4570
Hsp92I	GRCGYC	5 cut(s)	167, 188, 3016, 3742, 5012
HspAI	GCGC	4 cut(s)	167, 383, 3062, 3742
KasI	GGCGCC	2 cut(s)	166, 3741
KroI	GCCGGC	1 cut(s)	719
KroNI	GCCGGC	1 cut(s)	721
Ksp22I	TGATCA	3 cut(s)	1633, 1726, 2212
KspAI	GTTAAC	1 cut(s)	1525
KspI	CCGCGG	1 cut(s)	428
LguI	GCTCTTC	1 cut(s)	4704
LmnI	GCTCC	9 cut(s)	131, 315, 711, 2427, 2684, 2720, 2941, 2984, 4831
MaeII	ACGT	3 cut(s)	3016, 4498, 4570
MbiI	CCGCTC	2 cut(s)	3597, 4392
MfeI	CAATTG	2 cut(s)	1288, 4481
MflI	RGATCY	7 cut(s)	1321, 2185, 2233, 3362, 3901, 4000, 4911
MlsI	TGGCCA	2 cut(s)	2926, 3725
MluNI	TGGCCA	2 cut(s)	2926, 3725
Mly113I	GGCGCC	2 cut(s)	167, 3742
Mox20I	TGGCCA	2 cut(s)	2926, 3725
Mph1103I	ATGCAT	1 cut(s)	1038
MroNI	GCCGGC	1 cut(s)	719
MroXI	GAANNNNTTC	5 cut(s)	144, 2379, 3156, 3567, 4188
MscI	TGGCCA	2 cut(s)	2926, 3725
MslI	CAYNNNNRTG	6 cut(s)	2041, 2084, 3334, 4992, 5076, 5088
Msp20I	TGGCCA	2 cut(s)	2926, 3725
MspA1I	CMGCKG	3 cut(s)	427, 1679, 3835
MspCI	CTTAAG	2 cut(s)	4292, 4802
MspR9I	CCNGG	7 cut(s)	202, 390, 848, 1020, 2850, 2884, 5107
MunI	CAATTG	2 cut(s)	1288, 4481
Mva1269I	GAATGC	2 cut(s)	3987, 5040
MvaI	CCWGG	4 cut(s)	202, 1020, 2850, 5107
MvnI	CGCG	4 cut(s)	427, 461, 516, 679
NaeI	GCCGGC	1 cut(s)	721
NarI	GGCGCC	2 cut(s)	167, 3742
NciI	CCSGG	3 cut(s)	390, 848, 2884
NcoI	CCATGG	1 cut(s)	3726
NdeI	CATATG	2 cut(s)	1916, 2638
NgoMIV	GCCGGC	1 cut(s)	719
NruI	TCGCGA	2 cut(s)	461, 516
NsiI	ATGCAT	1 cut(s)	1038
NspI	RCATGY	5 cut(s)	1036, 2751, 4198, 4826, 5087
NspV	TTCGAA	4 cut(s)	596, 994, 1214, 1885
PaeI	GCATGC	1 cut(s)	4198
PaeR7I	CTCGAG	3 cut(s)	535, 3598, 4329
PagI	TCATGA	2 cut(s)	2079, 4456
PceI	AGGCCT	2 cut(s)	4766, 4902
PciSI	GCTCTTC	1 cut(s)	4704
PcsI	WCGNNNNNNNCGW	6 cut(s)	53, 56, 59, 62, 65, 561
PctI	GAATGC	2 cut(s)	3987, 5040
PdiI	GCCGGC	1 cut(s)	721
PdmI	GAANNNNTTC	5 cut(s)	144, 2379, 3156, 3567, 4188
PflFI	GACNNNGTC	1 cut(s)	1138
PflMI	CCANNNNNTGG	2 cut(s)	418, 1534
PfoI	TCCNGGA	1 cut(s)	2848
PinAI	ACCGGT	1 cut(s)	754
Ple19I	CGATCG	1 cut(s)	241
PluTI	GGCGCC	2 cut(s)	170, 3745
Ppu21I	YACGTR	1 cut(s)	4571
PpuMI	RGGWCCY	2 cut(s)	175, 1684
PshAI	GACNNNNGTC	1 cut(s)	2163
PshBI	ATTAAT	1 cut(s)	1229
Psp124BI	GAGCTC	5 cut(s)	23, 708, 899, 2946, 2977
Psp5II	RGGWCCY	2 cut(s)	175, 1684
Psp6I	CCWGG	4 cut(s)	200, 1018, 2848, 5105
PspFI	CCCAGC	1 cut(s)	3444
PspGI	CCWGG	4 cut(s)	200, 1018, 2848, 5105
PspPI	GGNCC	9 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 3889, 5102
PspPPI	RGGWCCY	2 cut(s)	175, 1684
PspXI	VCTCGAGB	1 cut(s)	3598
PstNI	CAGNNNCTG	3 cut(s)	385, 2237, 3179
PsuI	RGATCY	7 cut(s)	1321, 2185, 2233, 3362, 3901, 4000, 4911
PsyI	GACNNNGTC	1 cut(s)	1138
PvuI	CGATCG	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	3835
RruI	TCGCGA	2 cut(s)	461, 516
RsaI	GTAC	8 cut(s)	254, 323, 395, 1177, 2047, 2832, 3051, 4656
RsaNI	GTAC	8 cut(s)	253, 322, 394, 1176, 2046, 2831, 3050, 4655
RseI	CAYNNNNRTG	6 cut(s)	2041, 2084, 3334, 4992, 5076, 5088
Rsr2I	CGGWCCG	1 cut(s)	752
RsrII	CGGWCCG	1 cut(s)	752
SacI	GAGCTC	5 cut(s)	23, 708, 899, 2946, 2977
SacII	CCGCGG	1 cut(s)	428
SalI	GTCGAC	1 cut(s)	3395
SapI	GCTCTTC	1 cut(s)	4704
Sau96I	GGNCC	9 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 3889, 5102
ScaI	AGTACT	2 cut(s)	254, 323
ScrFI	CCNGG	7 cut(s)	202, 390, 848, 1020, 2850, 2884, 5107
SfcI	CTRYAG	6 cut(s)	2567, 2622, 2724, 3690, 4017, 4425
SfoI	GGCGCC	2 cut(s)	168, 3743
Sfr274I	CTCGAG	3 cut(s)	535, 3598, 4329
Sfr303I	CCGCGG	1 cut(s)	428
SfuI	TTCGAA	4 cut(s)	596, 994, 1214, 1885
SgrBI	CCGCGG	1 cut(s)	428
SinI	GGWCC	8 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 5102
SlaI	CTCGAG	3 cut(s)	535, 3598, 4329
SmiI	ATTTAAAT	1 cut(s)	3949
SmiMI	CAYNNNNRTG	6 cut(s)	2041, 2084, 3334, 4992, 5076, 5088
SmlI	CTYRAG	6 cut(s)	535, 3598, 4292, 4329, 4379, 4802
SmoI	CTYRAG	6 cut(s)	535, 3598, 4292, 4329, 4379, 4802
SpeI	ACTAGT	2 cut(s)	1088, 1622
SphI	GCATGC	1 cut(s)	4198
SseBI	AGGCCT	2 cut(s)	4766, 4902
SspDI	GGCGCC	2 cut(s)	166, 3741
SspI	AATATT	1 cut(s)	2154
SstI	GAGCTC	5 cut(s)	23, 708, 899, 2946, 2977
StuI	AGGCCT	2 cut(s)	4766, 4902
StyD4I	CCNGG	7 cut(s)	200, 388, 846, 1018, 2848, 2882, 5105
StyI	CCWWGG	2 cut(s)	2168, 3726
SwaI	ATTTAAAT	1 cut(s)	3949
TaiI	ACGT	3 cut(s)	3019, 4501, 4573
TaqII	GACCGA	2 cut(s)	3568, 3815
TatI	WGTACW	5 cut(s)	252, 321, 1175, 2045, 3049
TauI	GCSGC	3 cut(s)	164, 167, 213
TscAI	CASTG	8 cut(s)	315, 1452, 1669, 2269, 2497, 3235, 3341, 4680
TspRI	CASTG	8 cut(s)	315, 1452, 1669, 2269, 2497, 3235, 3341, 4680
Tth111I	GACNNNGTC	1 cut(s)	1138
Van91I	CCANNNNNTGG	2 cut(s)	418, 1534
Vha464I	CTTAAG	2 cut(s)	4292, 4802
VneI	GTGCAC	1 cut(s)	4566
VpaK11BI	GGWCC	8 cut(s)	94, 175, 277, 421, 752, 1684, 3551, 5102
VspI	ATTAAT	1 cut(s)	1229
XagI	CCTNNNNNAGG	1 cut(s)	2625
XbaI	TCTAGA	5 cut(s)	2188, 2312, 2977, 3896, 4042
XceI	RCATGY	5 cut(s)	1036, 2751, 4198, 4826, 5087
XcmI	CCANNNNNNNNNTGG	3 cut(s)	3652, 4991, 5027
XhoI	CTCGAG	3 cut(s)	535, 3598, 4329
XmiI	GTMKAC	2 cut(s)	3396, 3935
XmnI	GAANNNNTTC	5 cut(s)	144, 2379, 3156, 3567, 4188
ZraI	GACGTC	1 cut(s)	3017
ZrmI	AGTACT	2 cut(s)	254, 323
Zsp2I	ATGCAT	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.