Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Forward (+)

10766797 .. 10779042

Gene Structure 12246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6198 bp

ATGAAGCACCAGCAGAGCAGCTCATCGTCACCGTCGCAGTCGTCTGAGGCGGTCCCGTCTTCTTCGTCGTCGTCGTCGTCCCACTGTGACGACGGACCAATCACACATCCCGCCACCTCGAACTCGGCAGCCGCGGCGGAGAAGCCGCTGCCAATACCGGCGGCGGCGGCGGAGGACCTTGCGGTGGGGTCGAGGGACGGCGGCGGGGCGCAGGAGACGGTGACGGCTCTGCCCGGGTACATCTCCATCTACCTCCAAATCATGGACCCGCGGGGCACCTCCTCCTCCAAATGGGACTGCTTCGCCAGCTATCGCCTCGCCATCGTCAACGTCGCCGACGATTCCAAGACCATTCACAGGGACAGCTGGCACCGCTTCTCCAGCAAGAAGAAATCACACGGTTGGTGCGATTTCACCCCCTCCTCTACTGTTTTTGATTCCAAGTTAGGTTATCTTTTTAATTCCGACTCCGTTTTGATCACCGCCGATATTTTGATATTGAATGAGTCCGTTAATTTCACGCGAGATAATAATAACGAGCTGCAGTCATCTGCCGGCTCCATGATGTCATCTTCCGTCGTGGCCTGCCCGGTCTCCGATGTGTTGAGTGGCAAGTTCACTTGGAAGGTGCATAACTTTAGCTTGTTTAAGGATATGATTAAGACGCAGAAGATAATGAGCCCGGTGTTCCCCGCCGGCGAGTGTAATTTGAGGATTAGTGTTTATCAGAGCACTGTCAATGCTGTAGAGTATTTGTCAATGTGTTTGGAGAGCAAGGATACTGACAAGACGGTTGTGTTGTCCGATAGAAGTTGTTGGTGTTTGTTTCGAATGTCTGTGTTGAACCAGAAGCCGGGGTCTAATCACATGCACAGGGACTCGTATGGGAGGTTTGCTGCCGATAATAAGAGCGGGGATAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTCAGATTTCGTTGGGCCGGAGTCGGGGTTTTTGGCAGATGATACCGCGGTGTTTAGTACCTCATTTCATGTGATAAAGGAGTTTAGTAGCTTTTCGAAGAATGGGGGATTGGCTGCAGGGAGGAGTGGTAGTGGGCCGAGGAAATTGGATGGACATATGGGGAAATTTACTTGGAAGATTGAAAATTTCACAAAGTTGAAGGATCTATTAAAGAAGAGGAAGATAACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGGGACTGTCGGCTTATTGTTTATCCCCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACAGATTCACGGAACACTGCCAGTGATTGGAGTTGTTTTGTGAGTCATCGCTTGTCTGTTGTGAACCTGAAGATGGAAGAGAAGTCTGTCACAAAGGAGTCTCAGAACCGCTACTCCAAAGCTGCAAAGGACTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTCTTTGATCAAGATTCAGGGTTCCTTGTTCAGGACACTGTTGTATTCTCTGCAGAGGTCCTTATATTGAAAGAGACATCAATTATGCAGGATTTGATTGATCAGGATACCGAGTCTGCTACCCAGATTGACAAGAATGTAAAACGAAGCTCTTTTACATGGAAGGTGGAGAACTTCCTGTCTTTTAAGGAAATAATGGAGACCCGAAAAATCTTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGGGTATATGAGTCCTTTGACACCATATGTATTTATTTGGAGAGTGATCAGTCAGTTGGCAGTGATCTGGACAAAAATTTCTGGGTGCGATATAGGATGGCTGTTGTGAATCAGAAGAACCCTGCCAAAACTGTGTGGAAGGAGTCTTCCATATGTACAAAGACTTGGAACAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCAGATGCAGGGTTTCTTGTCCGTGATACCGTTGTTTTTGTATGTGAAATATTGGACTGCTGTCCTTGGTTTGAGTTTTCAGACCTAGAGGTTTTTGCTTCCGAGGATGATCAGGATGCGTTGACAACAGATCCTGATGAACTTGTTGATTCTGAAGATAGTGAAGGAATAGGTGGTGACGAAGAAGATATCTTTAGAAACCTGCTTTCCAGAGCTGGATTTCACCTCACGTATGGAGATAATCCGTCACAGCCACAGGTCACTTTACGAGAAAAACTTCTGATGGATGCGGGTGCTATTGCTGGTTTCCTGACTGGACTCCGTGTTTATCTTGATGACCCTGCTAAAGTAAAGCGCTTGCTTCTTCCAACTAAGCTTTCTGGTAGCGGTGATGGAATAAAGGTCTTGAAGAATGATGAATCTTCTCCTAGTTTGATGAATTTACTAATGGGAGTCAAAGTGTTGCAGCAGGCTATTATTGATTTACTTTTGGACATTATGGTTGAGTGTTGCCAACCTACAGAAGGGAGTTGTAATGGTGATTTATCTGATGGAAACTCAAAAACTCCAGATGGAAGTGGAGGTGCTAGTCCGCTGCAATCTGATAGAGAAAATGGAGCAACAGAATCTGTGCATTGTCCCGTGTATGAGCGATTGGATGCCAGTGTTGATGAAAGTACCAGTGCTTCGGCTGTTCAAAGTTCTGACATGCACGGGGTTGGTATCCCAGGAAAAACTCTTCCTGGGCAGCCAATTTATCCCCCAGAAACATCTGCAGGGGCATCAGAAAATGTGTCCCTTCGTTCAAAGACTAAGTGGCCAGAGCAATCTGAGGAGCTCTTAGGATTGATTGTAAACTCACTGAGAGCTTTGGATGGAGCTGTTCCACAAGGCTGTCCTGAACCAAGACGTAGGCCTCAGTCTGCACAAAAGATCGCTCTTGTACTGGATAAAGCTCCTAAGCATTTGCAGCCTGATCTGGTGTCTTTGGTGCCCAAGTTGGTTGAACATTCAGAGCATCCACTTGCTGCCTTTGCGCTTATTGAACGATTGCAAAAGCCAGATGCAGAACTTGCATTGCGGACACCTGTTTTCAGTGCTCTGAGTCAACTGGACTGTGGCAGTGAAGTGTGGGAACGGGTTTTATCTCAATCTTTTGAGTTTTTGTCAGATTCAAATGATGAACCTCTTGCTGCAACCATAGATTTCATATTTAAAGCTGCATCCCAGTGCCAACACCTACCTGAAGCAGTCAGATCTGTTCGTGTTAGGCTAAAGAATTTGGGTGTCGATGTTTCTCCTTGTGTCCTTGAATTATTGAGTAGGACTGTAAATAGCTGGGGAGATGTTGCTGAAACCATACTTAGAGATATTGATTGTGATGATGATTTTGGTGATAGTTGCTCGATTATGCATTCTGGGCTTTTCTTGTTTGGAGAACATGGCCCTTGTTCGGAACGGTTTCATTTGGTGGATGAGCAGGCTTTCCGGCCTTGTCGCCATTTTTCTGATATTTACATCTTGATTGAGATGTTATCCATACCTTGTCTGGCTGTAGAAGCCTCTCAAACGTTTGAGAGAGCTGTAGCTCGTGGTGCTATTGTAGCTCATTCTGTGGCCATGGTTTTGGAAAGGCGCCTTGCTCAAAGATTGAACCTTGATGCTAGATTTGTTGCGGAAAGCTTTCAGCAGACAGATTTGGTAGTAGAGGGAGAAGCCACTGAACAGCTGAGAGTCCAACAAGACGATTTTACTTCAGTTCTTGGTCTTGCTGAAACATTGGCCCTCTCTAGAGATCCTTGTGTTAAGGGATTTGTGAAGATGCTCTACACATTATTGTTCAAATGGTATGCTGACGAGTCTTATCGAGGGAGAATTCTAAAGAGACTTGTTGATCGTGCCACTAGTACTACAGATAGTAGTCGTGAAATTGAACTAGATTTTGATATATTGGTGACACTAGCTTCTGAGGAGCAGGAAATTGTTAGACCAGTTTTGAGTATGATGCGGGAGGTTGCTGAACTTGCAAATGTCGATCGGGCTGCTCTTTGGCACCAGTTATGTGCTAGTGAAGATGAAATCATTCGCATGCGGGAAGAGAGGAAAGCAGAAACTGCTAACATGGCTAGAGAAAAAGCTGTTATATTGCAAAAACTGAGTGAATCCGAGGCCACTAACAACCGTCTTAAGTCTGAAATGAAGGCTGAGAATGACCGCTTTGCTCGAGAAAAGAAGGAGCTCTCGGAACGAATACAAGAAGTTGAGAGTCAGCTTGAGTGGCACCGCTCAGAGCGAGATGATGAAATTAGAAAGCTCACTACAGATAGGAAAGTGTTTCAGGATCGTCTTCATGATGCAGAGACACAACTCTCTCAATTGAAGTCCCGAAAACGTGATGAATTGAAGCTGCACGTAAAAAGATTTGATGAAGAACTTAAACGGTATGCCACAGAGAAGGTGACTCGAGAGGAAATTCGACAATCTCTGGAGGATGAAGTACGGAGACTGACACAAACAGTAGGACAAACAGAAGGAGAGAAACGAGAGAAGGAAGAGCAGGTTGCTCGGTGTGAAGCCTATATTGATGGGATGGAATCAAAACTGCAGGCCTGCCAGCAATATATTCATACCCTTGAGGCTTCACTTCAGGAAGAAATGTCCCGGCATGCTCCTCTGTATGGTGCTGGTTTGGAGGCATTATCAATGAAGGAGTTGGAGACACTGTCCCGTATCCATGAAGAAGGGCTCAGGCAGATCCATACCCTTCAGCAGCGTAAGGGTAGTCCAGCTGGCAGTCCCCTTGAGGCTAGCATGAAGAAAGTTTGTTGGCCTTACTTTGATCCTGACTTTCATAATCTCCCAGAAAGGATCTATGGCCCTGTATGTAGAGTATCCCTCGACAACGAGACGTTGGAAGATTGCACATTAGTAAAGGTGGATAGCGTGAACAAGCAAGGGCTTCTCCTCGAATTGATTCAAGTATTGACAGACATGAATCTTACCATCACTAAATGTTTTATATCTTCTGATGCAGAATGGTTCATGGATGTTTTTCATGTTAAAGATGAGCATGGCAACAAACTTACAGACCAGAATGCCATTAACTATATCCAGCAGGCCATAGGTACAACTACTGGTCCTCCAGACTCCACCAGGGCCAATGCCTATGCCAGCAATATTTTCGAATCCGAAAACCATAGCGAGCATACGACCATCGAAATGACGGGAACGGACCGCCCTGGTCTCTTCTCGGAGATATCGGCTGCCCTTGCCGACCTCCAATGCAACATAGTTGAAGCCCATGCGTGGACCCATAACGGCCGGCTAGCTTGTGTTGCTCAAATATCTGACCAATCCACTGACGCCCCAATCGACGACCCCCACCGCCTCGCCACCATCGAAGACCACCTCATCACCGTCCTTCGAGCCACCACCGCCGTAAGCCCTTGTGGGAAAGATGCAAACAACCAAGAAGTGAAGACCACAGGGTTTTTAGGAGGAGACTATCAAGGCACCATGACTAATGTCGAAAGGAGGTTACACCAACTAATGCTTTCCATTAGGGACTTTGATGGCCCCAATTTGAGGCCCGCCAGCTCTCCGAGGACGCCATTTGCATGGGAGGCTGAGGAAGAGTGTAGGAAGACGGCGGTTTGGATCGAGAGCTGCAAGGAGAAAGGGTATTCCATGGTGAGCTTAGAGTGTAAGGATCGGCCGAGGCTTATGTTTGATACTGTGTGCACTCTAACTGACATGCAGTATGTGATTTTCCACGCTTCCACTCATTGCCTTGAAGGATATGCCTTTCAGGAATACTTTATCCGGCATGTTGACGGGGATGTCTTGTGCACAGAGAGTGAGAAGGAACGAGTTATAAAATGCTTAGAGGCTGCTATTGAGCGTCGAGTTTGTGAGGGGATTCGACTAGAGTTGCGTGCCGACGATAGGATGGGATTGCTATCGGATATAACTAGGGTTCTACGAGAGAATGGACTTGCTGTTGTTCGAGCAGATGTAGCAACCCAAGGAGAGAAGTCGATTAACGCTTTCTATGTGAGGGACATTTCAGGGAACGAAGTAGTTCCAGACATGGATTTTGTTGAGTCCATGAAGAGAGAATTGATGGGTCCAAGTCATATAAACCTTCAAGTCAAGAATGAGAAACATCTCAGATCACCAAGCTTAACTGAAAAGTCTCGTTATTTCTCAAATATTGGAGATATTCTAAAATCTCAAATTGGGCGTTTCTCCTTTGCTAAGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

2065

Amino Acids

231.26

Weight (kDa)

5.23

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	79 - 164	1.6e-08	MATH domain
MATH_2	PF22486	205 - 337	2.4e-19	MATH domain
MATH_2	PF22486	373 - 507	7.8e-29	MATH domain
MATH	PF00917	403 - 509	4.8e-09	MATH domain
MATH_2	PF22486	538 - 660	6.3e-13	MATH domain
ACT_6	PF13740	1715 - 1759	2.3e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	5804
AasI	GACNNNNNNGTC	1 cut(s)	5768
Acc36I	ACCTGC	2 cut(s)	2139, 4477
AccB1I	GGYRCC	7 cut(s)	275, 369, 2920, 3564, 3981, 4209, 5441
AccB7I	CCANNNNNTGG	2 cut(s)	262, 1323
AccBSI	CCGCTC	2 cut(s)	912, 4215
AccII	CGCG	4 cut(s)	134, 271, 523, 1001
AclI	AACGTT	1 cut(s)	3500
AclWI	GGATC	9 cut(s)	1164, 2054, 3719, 4278, 4678, 4763, 4805, 5594, 5646
AcoI	YGGCCR	4 cut(s)	2747, 3546, 5248, 5642
AcsI	RAATTY	9 cut(s)	1118, 1138, 1442, 1682, 1792, 2368, 3208, 3804, 4401
AcuI	CTGAAG	6 cut(s)	1385, 2103, 3195, 3669, 4559, 4679
AcyI	GRCGYC	3 cut(s)	3565, 5292, 5537
AfaI	GTAC	8 cut(s)	239, 1012, 1873, 2608, 2874, 3838, 4428, 5056
AfeI	AGCGCT	1 cut(s)	2285
AflII	CTTAAG	1 cut(s)	4115
AhlI	ACTAGT	2 cut(s)	1457, 3833
AjnI	CCWGG	4 cut(s)	2656, 2671, 5081, 5167
AjuI	GAANNNNNNNTTGG	4 cut(s)	1046, 1078, 2290, 2322
AloI	GAACNNNNNNTCC	2 cut(s)	1394, 1426
Alw21I	GWGCWC	6 cut(s)	734, 2769, 3031, 4170, 5672, 5780
Alw44I	GTGCAC	2 cut(s)	5668, 5776
AlwI	GGATC	9 cut(s)	1164, 2054, 3719, 4278, 4678, 4763, 4805, 5594, 5646
AlwNI	CAGNNNCTG	3 cut(s)	2063, 2558, 4043
Ama87I	CYCGRG	4 cut(s)	233, 1248, 4152, 4392
Aor51HI	AGCGCT	1 cut(s)	2285
ApaLI	GTGCAC	2 cut(s)	5668, 5776
ApoI	RAATTY	9 cut(s)	1118, 1138, 1442, 1682, 1792, 2368, 3208, 3804, 4401
ArsI	GACNNNNNNTTYG	2 cut(s)	6008, 6040
Asp700I	GAANNNNTTC	6 cut(s)	2205, 3390, 3612, 4011, 4902, 6009
AspLEI	GCGC	4 cut(s)	211, 2286, 2968, 3567
AsuC2I	CCSGG	6 cut(s)	234, 235, 590, 683, 855, 4591
AsuII	TTCGAA	3 cut(s)	829, 1049, 5112
AsuNHI	GCTAGC	2 cut(s)	4736, 5254
AvaI	CYCGRG	4 cut(s)	233, 1248, 4152, 4392
AvaII	GGWCC	9 cut(s)	52, 95, 175, 265, 1519, 5066, 5161, 5238, 6056
BaeGI	GKGCMC	4 cut(s)	278, 2925, 5672, 5780
BaeI	ACNNNNGTAYC	4 cut(s)	987, 1020, 1947, 1980
BalI	TGGCCA	2 cut(s)	2749, 3548
BanI	GGYRCC	7 cut(s)	275, 369, 2920, 3564, 3981, 4209, 5441
BanII	GRGCYC	4 cut(s)	683, 2769, 4170, 4677
BarI	GAAGNNNNNNTAC	6 cut(s)	1600, 1632, 2599, 2631, 3740, 3772
BauI	CACGAG	1 cut(s)	3519
BbsI	GAAGAC	6 cut(s)	51, 1854, 4268, 5337, 5414, 5579
Bbv12I	GWGCWC	6 cut(s)	734, 2769, 3031, 4170, 5672, 5780
BbvCI	CCTCAGC	1 cut(s)	5556
BceAI	ACGGC	5 cut(s)	214, 240, 5263, 5351, 5592
BcgI	CGANNNNNNTGC	6 cut(s)	3953, 3987, 4475, 4509, 5092, 5126
BciT130I	CCWGG	4 cut(s)	2658, 2673, 5083, 5169
BciVI	GTATCC	5 cut(s)	772, 1561, 2663, 4670, 4831
BclI	TGATCA	5 cut(s)	477, 1468, 1561, 1762, 2038
BcnI	CCSGG	6 cut(s)	234, 235, 590, 683, 855, 4591
BcuI	ACTAGT	2 cut(s)	1457, 3833
BfoI	RGCGCY	2 cut(s)	2287, 3568
BfrI	CTTAAG	1 cut(s)	4115
BfuAI	ACCTGC	2 cut(s)	2139, 4477
BfuI	GTATCC	5 cut(s)	772, 1561, 2663, 4670, 4831
BglII	AGATCT	1 cut(s)	3185
BmcAI	AGTACT	1 cut(s)	3838
Bme18I	GGWCC	9 cut(s)	52, 95, 175, 265, 1519, 5066, 5161, 5238, 6056
BmeT110I	CYCGRG	4 cut(s)	233, 1248, 4152, 4392
BmrI	ACTGGG	2 cut(s)	1438, 3151
BmtI	GCTAGC	2 cut(s)	4740, 5258
BmuI	ACTGGG	2 cut(s)	1438, 3151
BoxI	GACNNNNGTC	2 cut(s)	1989, 5453
BpiI	GAAGAC	6 cut(s)	51, 1854, 4268, 5337, 5414, 5579
BplI	GAGNNNNNCTC	2 cut(s)	4809, 4841
BpmI	CTGGAG	4 cut(s)	364, 2481, 4436, 5055
Bpu10I	CCTNAGC	3 cut(s)	2889, 4676, 5556
Bpu14I	TTCGAA	3 cut(s)	829, 1049, 5112
BpuEI	CTTGAG	3 cut(s)	4223, 4583, 4751
BpuMI	CCSGG	6 cut(s)	234, 235, 590, 683, 855, 4591
BsaAI	YACGTR	2 cut(s)	2160, 4342
BsaBI	GATNNNNATC	1 cut(s)	5887
BsaHI	GRCGYC	3 cut(s)	3565, 5292, 5537
BsaI	GGTCTC	3 cut(s)	598, 1655, 5177
Bse118I	RCCGGY	4 cut(s)	157, 554, 695, 5250
Bse3DI	GCAATG	2 cut(s)	3005, 5713
Bse8I	GATNNNNATC	1 cut(s)	5887
BseBI	CCWGG	4 cut(s)	2658, 2673, 5083, 5169
BseJI	GATNNNNATC	1 cut(s)	5887
BseMI	GCAATG	2 cut(s)	3005, 5713
BseRI	GAGGAG	9 cut(s)	271, 274, 412, 1090, 2777, 3914, 4590, 4883, 5442
BseSI	GKGCMC	4 cut(s)	278, 2925, 5672, 5780
BseX3I	CGGCCG	2 cut(s)	5248, 5642
BseYI	CCCAGC	1 cut(s)	3267
BsgI	GTGCAG	2 cut(s)	2838, 4322
Bsh1236I	CGCG	4 cut(s)	134, 271, 523, 1001
Bsh1285I	CGRYCG	3 cut(s)	3967, 5251, 5645
BshNI	GGYRCC	7 cut(s)	275, 369, 2920, 3564, 3981, 4209, 5441
BsiEI	CGRYCG	3 cut(s)	3967, 5251, 5645
BsiHKAI	GWGCWC	6 cut(s)	734, 2769, 3031, 4170, 5672, 5780
BsiHKCI	CYCGRG	4 cut(s)	233, 1248, 4152, 4392
BsmBI	CGTCTC	2 cut(s)	209, 4829
BsmI	GAATGC	2 cut(s)	3343, 5029
Bso31I	GGTCTC	3 cut(s)	598, 1655, 5177
BsoBI	CYCGRG	4 cut(s)	233, 1248, 4152, 4392
Bsp119I	TTCGAA	3 cut(s)	829, 1049, 5112
Bsp1407I	TGTACA	1 cut(s)	1871
Bsp19I	CCATGG	2 cut(s)	3549, 5616
BspFNI	CGCG	4 cut(s)	134, 271, 523, 1001
BspHI	TCATGA	2 cut(s)	1905, 4279
BspMAI	CTGCAG	5 cut(s)	546, 1072, 1516, 2707, 4536
BspMI	ACCTGC	2 cut(s)	2139, 4477
BspOI	GCTAGC	2 cut(s)	4740, 5258
BspPI	GGATC	9 cut(s)	1164, 2054, 3719, 4278, 4678, 4763, 4805, 5594, 5646
BspQI	GCTCTTC	1 cut(s)	4476
BspT104I	TTCGAA	3 cut(s)	829, 1049, 5112
BspT107I	GGYRCC	7 cut(s)	275, 369, 2920, 3564, 3981, 4209, 5441
BspTI	CTTAAG	1 cut(s)	4115
BspTNI	GGTCTC	3 cut(s)	598, 1655, 5177
BsrBI	CCGCTC	2 cut(s)	912, 4215
BsrDI	GCAATG	2 cut(s)	3005, 5713
BsrFI	RCCGGY	4 cut(s)	157, 554, 695, 5250
BsrGI	TGTACA	1 cut(s)	1871
BssAI	RCCGGY	4 cut(s)	157, 554, 695, 5250
BssNI	GRCGYC	3 cut(s)	3565, 5292, 5537
BssSI	CACGAG	1 cut(s)	3519
BssT1I	CCWWGG	4 cut(s)	1994, 3549, 5616, 5953
Bst2BI	CACGAG	1 cut(s)	3519
Bst2UI	CCWGG	4 cut(s)	2658, 2673, 5083, 5169
Bst6I	CTCTTC	8 cut(s)	1163, 1368, 2673, 4020, 4476, 5180, 5556, 6035
BstACI	GRCGYC	3 cut(s)	3565, 5292, 5537
BstAFI	CTTAAG	1 cut(s)	4115
BstAPI	GCANNNNNTGC	2 cut(s)	3002, 4043
BstAUI	TGTACA	1 cut(s)	1871
BstBAI	YACGTR	2 cut(s)	2160, 4342
BstBI	TTCGAA	3 cut(s)	829, 1049, 5112
BstDSI	CCRYGG	5 cut(s)	132, 269, 999, 3549, 5616
BstENI	CCTNNNNNAGG	2 cut(s)	1490, 2451
BstFNI	CGCG	4 cut(s)	134, 271, 523, 1001
BstH2I	RGCGCY	2 cut(s)	2287, 3568
BstHHI	GCGC	4 cut(s)	211, 2286, 2968, 3567
BstMCI	CGRYCG	3 cut(s)	3967, 5251, 5645
BstNI	CCWGG	4 cut(s)	2658, 2673, 5083, 5169
BstNSI	RCATGY	6 cut(s)	871, 2641, 4021, 4598, 5686, 5759
BstPAI	GACNNNNGTC	2 cut(s)	1989, 5453
BstSLI	GKGCMC	4 cut(s)	278, 2925, 5672, 5780
BstUI	CGCG	4 cut(s)	134, 271, 523, 1001
BstV2I	GAAGAC	6 cut(s)	51, 1854, 4268, 5337, 5414, 5579
BstX2I	RGATCY	6 cut(s)	1156, 2059, 3185, 3724, 4683, 4797
BstXI	CCANNNNNNTGG	2 cut(s)	3556, 5547
BstYI	RGATCY	6 cut(s)	1156, 2059, 3185, 3724, 4683, 4797
BstZI	CGGCCG	2 cut(s)	5248, 5642
BsuI	GTATCC	5 cut(s)	772, 1561, 2663, 4670, 4831
BtgI	CCRYGG	5 cut(s)	132, 269, 999, 3549, 5616
BtgZI	GCGATG	1 cut(s)	1328
BtsI	GCAGTG	3 cut(s)	1311, 1783, 3058
BveI	ACCTGC	2 cut(s)	2139, 4477
CaiI	CAGNNNCTG	3 cut(s)	2063, 2558, 4043
CciI	TCATGA	2 cut(s)	1905, 4279
CfoI	GCGC	4 cut(s)	211, 2286, 2968, 3567
Cfr10I	RCCGGY	4 cut(s)	157, 554, 695, 5250
Cfr42I	CCGCGG	3 cut(s)	135, 272, 1002
Cfr9I	CCCGGG	1 cut(s)	233
CpoI	CGGWCCG	1 cut(s)	5161
CseI	GACGC	5 cut(s)	673, 1459, 5300, 5545, 5819
Csp6I	GTAC	8 cut(s)	238, 1011, 1872, 2607, 2873, 3837, 4427, 5055
CspI	CGGWCCG	1 cut(s)	5161
CviQI	GTAC	8 cut(s)	238, 1011, 1872, 2607, 2873, 3837, 4427, 5055
DinI	GGCGCC	1 cut(s)	3566
DraI	TTTAAA	1 cut(s)	3145
DrdI	GACNNNNNNGTC	1 cut(s)	5768
DseDI	GACNNNNNNGTC	1 cut(s)	5768
EaeI	YGGCCR	4 cut(s)	2747, 3546, 5248, 5642
EagI	CGGCCG	2 cut(s)	5248, 5642
Eam1104I	CTCTTC	8 cut(s)	1163, 1368, 2673, 4020, 4476, 5180, 5556, 6035
EarI	CTCTTC	8 cut(s)	1163, 1368, 2673, 4020, 4476, 5180, 5556, 6035
EciI	GGCGGA	2 cut(s)	152, 185
Ecl136II	GAGCTC	2 cut(s)	2767, 4168
EclXI	CGGCCG	2 cut(s)	5248, 5642
Eco130I	CCWWGG	4 cut(s)	1994, 3549, 5616, 5953
Eco147I	AGGCCT	2 cut(s)	2845, 4538
Eco24I	GRGCYC	4 cut(s)	683, 2769, 4170, 4677
Eco31I	GGTCTC	3 cut(s)	598, 1655, 5177
Eco32I	GATATC	2 cut(s)	2119, 5187
Eco47I	GGWCC	9 cut(s)	52, 95, 175, 265, 1519, 5066, 5161, 5238, 6056
Eco47III	AGCGCT	1 cut(s)	2285
Eco52I	CGGCCG	2 cut(s)	5248, 5642
Eco53kI	GAGCTC	2 cut(s)	2767, 4168
Eco57I	CTGAAG	6 cut(s)	1385, 2103, 3195, 3669, 4559, 4679
Eco88I	CYCGRG	4 cut(s)	233, 1248, 4152, 4392
EcoICRI	GAGCTC	2 cut(s)	2767, 4168
EcoNI	CCTNNNNNAGG	2 cut(s)	1490, 2451
EcoO109I	RGGNCCY	2 cut(s)	175, 1519
EcoRI	GAATTC	1 cut(s)	3804
EcoRII	CCWGG	4 cut(s)	2656, 2671, 5081, 5167
EcoRV	GATATC	2 cut(s)	2119, 5187
EcoT14I	CCWWGG	4 cut(s)	1994, 3549, 5616, 5953
EcoT22I	ATGCAT	1 cut(s)	3345
EcoT38I	GRGCYC	4 cut(s)	683, 2769, 4170, 4677
EgeI	GGCGCC	1 cut(s)	3566
EheI	GGCGCC	1 cut(s)	3566
ErhI	CCWWGG	4 cut(s)	1994, 3549, 5616, 5953
Esp3I	CGTCTC	2 cut(s)	209, 4829
FauNDI	CATATG	3 cut(s)	1110, 1742, 1868
FbaI	TGATCA	5 cut(s)	477, 1468, 1561, 1762, 2038
FriOI	GRGCYC	4 cut(s)	683, 2769, 4170, 4677
GlaI	GCGC	4 cut(s)	210, 2285, 2967, 3566
GsaI	CCCAGC	1 cut(s)	3271
GsuI	CTGGAG	4 cut(s)	364, 2481, 4436, 5055
HaeII	RGCGCY	2 cut(s)	2287, 3568
HgaI	GACGC	5 cut(s)	673, 1459, 5300, 5545, 5819
HhaI	GCGC	4 cut(s)	211, 2286, 2968, 3567
Hin1I	GRCGYC	3 cut(s)	3565, 5292, 5537
Hin6I	GCGC	4 cut(s)	209, 2284, 2966, 3565
HinP1I	GCGC	4 cut(s)	209, 2284, 2966, 3565
HincII	GTYRAC	4 cut(s)	328, 2052, 3038, 5761
HindII	GTYRAC	4 cut(s)	328, 2052, 3038, 5761
HindIII	AAGCTT	3 cut(s)	2303, 3610, 6109
HpyCH4IV	ACGT	7 cut(s)	330, 2159, 2839, 3500, 4321, 4341, 4838
HpySE526I	ACGT	7 cut(s)	330, 2159, 2839, 3500, 4321, 4341, 4838
Hsp92I	GRCGYC	3 cut(s)	3565, 5292, 5537
HspAI	GCGC	4 cut(s)	209, 2284, 2966, 3565
KasI	GGCGCC	1 cut(s)	3564
KroI	GCCGGC	3 cut(s)	554, 695, 5250
KroNI	GCCGGC	3 cut(s)	556, 697, 5252
Ksp22I	TGATCA	5 cut(s)	477, 1468, 1561, 1762, 2038
KspI	CCGCGG	3 cut(s)	135, 272, 1002
LguI	GCTCTTC	1 cut(s)	4476
LmnI	GCTCC	8 cut(s)	563, 2546, 2764, 2807, 2890, 3901, 4165, 4603
MaeII	ACGT	7 cut(s)	330, 2159, 2839, 3500, 4321, 4341, 4838
MbiI	CCGCTC	2 cut(s)	912, 4215
MfeI	CAATTG	1 cut(s)	4304
MflI	RGATCY	6 cut(s)	1156, 2059, 3185, 3724, 4683, 4797
MlsI	TGGCCA	2 cut(s)	2749, 3548
MluNI	TGGCCA	2 cut(s)	2749, 3548
Mly113I	GGCGCC	1 cut(s)	3565
MmeI	TCCRAC	6 cut(s)	489, 1905, 2321, 3691, 4623, 4821
Mox20I	TGGCCA	2 cut(s)	2749, 3548
Mph1103I	ATGCAT	1 cut(s)	3345
MreI	CGCCGGCG	1 cut(s)	695
MroNI	GCCGGC	3 cut(s)	554, 695, 5250
MroXI	GAANNNNTTC	6 cut(s)	2205, 3390, 3612, 4011, 4902, 6009
MscI	TGGCCA	2 cut(s)	2749, 3548
MslI	CAYNNNNRTG	4 cut(s)	3157, 4016, 5147, 5545
Msp20I	TGGCCA	2 cut(s)	2749, 3548
MspA1I	CMGCKG	8 cut(s)	134, 148, 271, 366, 1001, 2524, 3658, 4718
MspCI	CTTAAG	1 cut(s)	4115
MunI	CAATTG	1 cut(s)	4304
Mva1269I	GAATGC	2 cut(s)	3343, 5029
MvaI	CCWGG	4 cut(s)	2658, 2673, 5083, 5169
MvnI	CGCG	4 cut(s)	134, 271, 523, 1001
NaeI	GCCGGC	3 cut(s)	556, 697, 5252
NarI	GGCGCC	1 cut(s)	3565
NciI	CCSGG	6 cut(s)	234, 235, 590, 683, 855, 4591
NcoI	CCATGG	2 cut(s)	3549, 5616
NdeI	CATATG	3 cut(s)	1110, 1742, 1868
NgoMIV	GCCGGC	3 cut(s)	554, 695, 5250
NheI	GCTAGC	2 cut(s)	4736, 5254
NmeAIII	GCCGAG	3 cut(s)	104, 1116, 5670
NsiI	ATGCAT	1 cut(s)	3345
NspI	RCATGY	6 cut(s)	871, 2641, 4021, 4598, 5686, 5759
NspV	TTCGAA	3 cut(s)	829, 1049, 5112
PaeI	GCATGC	2 cut(s)	4021, 4598
PaeR7I	CTCGAG	2 cut(s)	4152, 4392
PagI	TCATGA	2 cut(s)	1905, 4279
PceI	AGGCCT	2 cut(s)	2845, 4538
PciSI	GCTCTTC	1 cut(s)	4476
PcsI	WCGNNNNNNNCGW	6 cut(s)	71, 74, 336, 405, 5298, 5325
PctI	GAATGC	2 cut(s)	3343, 5029
PdiI	GCCGGC	3 cut(s)	556, 697, 5252
PdmI	GAANNNNTTC	6 cut(s)	2205, 3390, 3612, 4011, 4902, 6009
PflFI	GACNNNGTC	1 cut(s)	4651
PflMI	CCANNNNNTGG	2 cut(s)	262, 1323
Ple19I	CGATCG	1 cut(s)	3967
PluTI	GGCGCC	1 cut(s)	3568
Ppu21I	YACGTR	2 cut(s)	2160, 4342
PpuMI	RGGWCCY	2 cut(s)	175, 1519
PshAI	GACNNNNGTC	2 cut(s)	1989, 5453
PsiI	TTATAA	1 cut(s)	5804
Psp124BI	GAGCTC	2 cut(s)	2769, 4170
Psp1406I	AACGTT	1 cut(s)	3500
Psp5II	RGGWCCY	2 cut(s)	175, 1519
Psp6I	CCWGG	4 cut(s)	2656, 2671, 5081, 5167
PspFI	CCCAGC	1 cut(s)	3267
PspGI	CCWGG	4 cut(s)	2656, 2671, 5081, 5167
PspPPI	RGGWCCY	2 cut(s)	175, 1519
PstI	CTGCAG	5 cut(s)	546, 1072, 1516, 2707, 4536
PstNI	CAGNNNCTG	3 cut(s)	2063, 2558, 4043
PsuI	RGATCY	6 cut(s)	1156, 2059, 3185, 3724, 4683, 4797
PsyI	GACNNNGTC	1 cut(s)	4651
PvuI	CGATCG	1 cut(s)	3967
PvuII	CAGCTG	3 cut(s)	366, 3658, 4718
RsaI	GTAC	8 cut(s)	239, 1012, 1873, 2608, 2874, 3838, 4428, 5056
RsaNI	GTAC	8 cut(s)	238, 1011, 1872, 2607, 2873, 3837, 4427, 5055
RseI	CAYNNNNRTG	4 cut(s)	3157, 4016, 5147, 5545
Rsr2I	CGGWCCG	1 cut(s)	5161
RsrII	CGGWCCG	1 cut(s)	5161
SacI	GAGCTC	2 cut(s)	2769, 4170
SacII	CCGCGG	3 cut(s)	135, 272, 1002
SapI	GCTCTTC	1 cut(s)	4476
ScaI	AGTACT	1 cut(s)	3838
SfoI	GGCGCC	1 cut(s)	3566
Sfr274I	CTCGAG	2 cut(s)	4152, 4392
Sfr303I	CCGCGG	3 cut(s)	135, 272, 1002
SfuI	TTCGAA	3 cut(s)	829, 1049, 5112
SgrAI	CRCCGGYG	1 cut(s)	695
SgrBI	CCGCGG	3 cut(s)	135, 272, 1002
SinI	GGWCC	9 cut(s)	52, 95, 175, 265, 1519, 5066, 5161, 5238, 6056
SlaI	CTCGAG	2 cut(s)	4152, 4392
SmaI	CCCGGG	1 cut(s)	235
SmiMI	CAYNNNNRTG	4 cut(s)	3157, 4016, 5147, 5545
SmlI	CTYRAG	6 cut(s)	4115, 4152, 4202, 4392, 4562, 4730
SmoI	CTYRAG	6 cut(s)	4115, 4152, 4202, 4392, 4562, 4730
SpeI	ACTAGT	2 cut(s)	1457, 3833
SphI	GCATGC	2 cut(s)	4021, 4598
SseBI	AGGCCT	2 cut(s)	2845, 4538
SspDI	GGCGCC	1 cut(s)	3564
SspI	AATATT	3 cut(s)	1980, 5107, 6142
SstI	GAGCTC	2 cut(s)	2769, 4170
StuI	AGGCCT	2 cut(s)	2845, 4538
StyI	CCWWGG	4 cut(s)	1994, 3549, 5616, 5953
TaiI	ACGT	7 cut(s)	333, 2162, 2842, 3503, 4324, 4344, 4841
TatI	WGTACW	3 cut(s)	1871, 2872, 3836
TauI	GCSGC	7 cut(s)	134, 137, 148, 164, 167, 170, 204
TspMI	CCCGGG	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	4651
Van91I	CCANNNNNTGG	2 cut(s)	262, 1323
Vha464I	CTTAAG	1 cut(s)	4115
VneI	GTGCAC	2 cut(s)	5668, 5776
VpaK11BI	GGWCC	9 cut(s)	52, 95, 175, 265, 1519, 5066, 5161, 5238, 6056
XagI	CCTNNNNNAGG	2 cut(s)	1490, 2451
XapI	RAATTY	9 cut(s)	1118, 1138, 1442, 1682, 1792, 2368, 3208, 3804, 4401
XbaI	TCTAGA	1 cut(s)	3719
XceI	RCATGY	6 cut(s)	871, 2641, 4021, 4598, 5686, 5759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3475
XhoI	CTCGAG	2 cut(s)	4152, 4392
XmaI	CCCGGG	1 cut(s)	233
XmnI	GAANNNNTTC	6 cut(s)	2205, 3390, 3612, 4011, 4902, 6009
ZrmI	AGTACT	1 cut(s)	3838
Zsp2I	ATGCAT	1 cut(s)	3345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.