Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Reverse (-)

58439118 .. 58447537

Gene Structure 8420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG385100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4518 bp

ATGAAGCACCAGCAGAGCAGCTCATCGTCACCGTCGCAGTCGTCTGAGGCGGTCCCGTCTTCGTCGTCGTCGTCGTCGTCGTCCACTGTGACGACGGACCAATCACATCCCGCCACCTCGAACTCGGCATCCGCGGTGGAGAAGCCGCAGCCAATACCTGCGGCGGCGGCGGAGGACCTTGCGGTGGGGTCGAGGGACGGCGGCGGGGCGCAGGAGACGGTGACGGTCGATCGGAGAGGGGAGTACTCGGCCGTGTGCAGATGGACGGTCCAGAATTTTCCGAGAATCAAAGCTAGGGCACTTTGGAGCAAGTACTTCGAGGTGGGAGGGTACGATTGCCGGTTGTTAATATACCCTAAGGGTGACTCACAGGCTCTGCCTGGGTATATCTCCATCTACCTCCAAATCATGGACCCGCGGGGCACCTCCTCCTCCAAATGGGACTGCTTCGCCAGCTACCGCCTCGCCATCGTCAACGTCGCCGACGATTCCAAGACCATTCACAGGGACAGCTGGCACCGCTTCTCCAGCAAGAAGAAATCACACGGTTGGTGCGATTTCACCCCCTCCTCTACTGTTTTTGATTCCAAGTTAGGTTATCTTTTCAATTCCGACTCCGTTTTGATCACCGCCGATATTTTGATATTGAATGAGTCCGTTCATTTCACGCGAGATAATAATAACGAGCTGCAGTCATCTGCCGGCTCCATGATGTCATCTTCCGTCGTGGCCGGCCCGGTCTCCGATGTGTTGAGTGGCAAGTTCACTTGGAAGGTGCATAACTTTAGCTTGTTTAAGGATATGATTAAGACGCAGAAGGTAATGAGCCCGGTGTTCCCCGCCGGCGAGTGTAATTTGAGGATTAGTGTTTATCAGAGCACTGTTAATGCTGTAGAGTATTTGTCAATGTGTTTGGAGAGCAAGGATACTGACAAGACGGTTGTGTTGTCCGATAGAAGTTGTTGGTGTTTGTTTCGAATGTCTGTGTTGAACCAGAAGCCGGGGTCTAATCACATGCACAGGGACTCGTATGGGAGGTTTGCTGCCGATAATAAGAGCGGGGATAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTCAGATTTCGTTGGGCCAGAGTCGGGGTTTTTGGCAGATGATACCGCGGTGTTTAGTACCTCATTTCATGTGATAAAGGAGTTTAGTAGCTTTTCGAAGAATGGGGGATTGGCTGCAGGGAGGAGTGGTAGTGGGGCGAGGAAGTTGGATGGACATATGGGGAAATTTACTTGGAAGATTGAAAATTTCACAAAGTTGAAGGATCTATTAAAGAAGAGGAAGATAACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGGGACTGTCGGCTCATTGTTTATCCCCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACAGATTCACGGAACACTGCCAGTGATTGGAGTTGTTTTGTGAGTCATCGCTTGTCTGTTGTGAACCTGAAGATGGAAGAGAAGTCTGTCACAAAGGAGTCTCAGAACCGCTACTCCAAAGCTGCAAAGGACTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTCTTTGATCAAGATTCAGGGTTCCTTCTTCAGGACACTGTTGTATTCTCTGCAGAGGTCCTTATATTGAAAGAGACGTCAATTATGCAGGATTTGATTGATCAGGATACCGAGTCTGCTACCCAGATTGACAAGAATGTAAAACGAAGCTCTTTTACATGGAAGGTGGAGAACTTCCTGTCTTTTAAGGAAATAATGGAGACCCGAAAAATCTTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGGGTATATGAGTCCTTTGACACCATTTGTATTTATTTGGAGAGTGATCAGTCAGTTGGCAGTGATCTGGACAAAAATTTCTGGGTGCGATATAGGATGGCTGTTGTGAATCAAAAGAACCCTGCCAAAACTGTGTGGAAGGAGTCTTCCATATGTACAAAGACTTGGAACAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCAGATGCAGGGTTTCTTGTCCGTGATACCGTTGTTTTTGTATGTGAAATATTGGACTGCTGTCCTTGGTTTGAGTTTTCAGACCTAGAGGTTTTTGCTTCCGAGGATGATCAGGATGCGTTGACAACAGATCCTGATGAACTTGTTGATTCTGAAGATAGTGAAGGAATAGGTGGTGACGAAGAAGATATCTTTAGAAACCTACTTTCCAGAGCTGGATTTCACCTCACGTATGGAGATAATCCGTCACAGCCACAGGTCACTTTACGAGAAAAGCTTCTGATGGATGCGGGTGCCATTGCTGGTTTCCTGACTGGACTCCGTGTTTATCTTGATGACCCTGCTAAAGTAAAGCGCCTGCTTCTTCCAACTAAGCTTTCTGGTAGCGGTGATGGAATGAAGGTCTTAAAGAATGATGAATCGTCTCCTAGTTTGATGAATTTACTAATGGGAGTCAAAGTGTTGCAGCAGGCTATTATTGATTTACTTTTGGACATTATGGTTGAGTGTTGCCAACCTACAGAAGGGAGTTGTAATGGTGATTTATCTGATGGAAACTCAAAAACTCCAGATGGAAGTGGAGCTGCTAGTCTGCTGCAATCTGATAGAGAAAATGGAGCAACAGAATCTGTGCATTGTCCAGTGTATGAGCGTTTGGATGCCAGTGTTGATGAAAGTACCAGTGGTTCGGCTGTTCAAAGTTCTGACATGCACGGGGTTGGTATCCCAGGAAAAACTCTTCCTGGGCAGCCAATTTACCCCCCAGAAACATCTGCAGGGGCATCAGAAAATGTGTCCCTTCGTTCAAAGACTAAGTGGCCAGAGCAATCTGAGGAGCTCTTAGGATTGATTGTAAACTCACTGAGAGCTTTGGATGGAGCTGTTCCACAAGGCTGTCCTGAACCAAGACGTAGGCCTCAGTCTGCACAAAAGATCGCGCTTGTACTGGATAAAGCTCCTAAGCATTTGCAGCCTGATCTGGTGTCTTTGGTGCCCAAGTTGGTTGAACATTCAGAGCATCCACTTGCTGCCTTTGCACTTATTGAACGATTGCAAAAGCCAGATGCAGAACTTGCATTGCGGACACCTGTTTTCGGTGCTCTGAGTCAACTGGACTGTGGCAGTGAAGTGTGGGAACGGGTTTTATCTCAATCTTTAGAGTTTTTGGCAGATTCAAACGATGAACCTCTTGCTGCAACCATAGATTTCATATTTAAAGCTGCATCCCAGTGCCAACACCTACCTGAAGCAGTCAGATCTGTTCGTGTTAGGCTAAAGAATTTGGGTGTCGATGTTTCTCCTTGTGTCCTTGAATTATTGAGTAGAACTATAAATAGCTGGGGAGATGTTGCTGAAACCATACTTAGAGATATTGATTGTGATGATGATTTTGATGATAGTTGCTCGACTATGCATTCTGGGCTTTTCTTGTTTGGAGAACATGGGCCTTGTTCGGAACGGTTTCATTTGGTGGATGAGCAGGCTTTCCGGCCTTGTCGCCATTTTTCTGATATTTACATCTTGATTGAGATGTTATCCATACCTTGTCTGGCTGTAGAAGCCTCTCAAACGTTTGAGAGAGCTGTAGCTCGTGGTGCTATTGTGGCTCATTCTGTGGCCATGGTTTTGGAAAGGCGCCTTGCTCAAAGATTGAACCTTGATGCTAGATTTGTTGCGGAAAGCTTTCAGCAGACAGATTTGGTTGTAGAGGGAGAAGCCAGTGAACAGCTGAGAGTCCAACAAGACGATTTTACTTCAGTTCTTGGTCTTGCTGAAACATTGGCCCTCTCTAGAGATCCTTGTGTTAAGGGATTTGTGAAGATGCTCTACACATTATTGTTCAAATGGTATGCTGATGAGTCTTATCGAGGGAGAATTCTAAAGAGACTTGTTGATCGTGCCACTAGTACTACAGATAGTAGTCGTGAAATTGATCTAGATTTTGATATATTGGTGACACTAGCTTCTGAGGAGCAGGAAATTGTTAGACCAGTTTTGAGTATTGTGCGGGAGGTTGCTGAACTTGCAAATGTCGATCGGGCTGCTCTTTGGCACCAGTTATGTGCTAGTGAAGATGAAATCATTCGCATGCGGGAAGAGAGGAAAGCAGAAACTGCTAACATGGCTAGAGAAAAAGCTGTTATATTGCAAAAACTGAGTGAATCCGAGGCCACTAACAACCGTCTTAAGTCTGAAATGAAGGCTGAGAATGACCGCTTTGCTCGAGAAAAGAAGGAGCTCTCGGAACGAATACAAGAAGTTGAGAGTCAGCTTGAGTGGCACCGCTCAGAGCGAGATGATGAAATTAGAAAGCTCACTACAGATAGGAAAGTGTTTCAGGATCGTCTTCATGATGCAGAGACACAACTCTCTCAATTGAAGTCCCGAAAACGTGATGAATTGAAGGTATGGTATTATTATTATTCTAGTCATCTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

1505

Amino Acids

168.2

Weight (kDa)

5.29

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	87 - 213	2.8e-20	MATH domain
MATH	PF00917	91 - 215	8.6e-08	MATH domain
MATH_2	PF22486	254 - 386	3.1e-19	MATH domain
MATH_2	PF22486	422 - 556	3.1e-28	MATH domain
MATH	PF00917	452 - 558	1.8e-08	MATH domain
MATH_2	PF22486	587 - 709	4.3e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1688
Acc36I	ACCTGC	1 cut(s)	166
AccB1I	GGYRCC	7 cut(s)	422, 516, 2369, 3067, 3711, 4128, 4356
AccB7I	CCANNNNNTGG	2 cut(s)	409, 1470
AccBSI	CCGCTC	2 cut(s)	1059, 4362
AccII	CGCG	5 cut(s)	134, 418, 670, 1148, 3014
AclI	AACGTT	1 cut(s)	3647
AclWI	GGATC	4 cut(s)	1311, 2201, 3866, 4425
AcoI	YGGCCR	4 cut(s)	249, 729, 2894, 3693
AcsI	RAATTY	9 cut(s)	274, 1265, 1285, 1589, 1829, 1939, 2515, 3355, 3951
AcuI	CTGAAG	5 cut(s)	1532, 1622, 2250, 3342, 3816
AcyI	GRCGYC	2 cut(s)	1685, 3712
AfaI	GTAC	8 cut(s)	245, 314, 332, 1159, 2020, 2755, 3021, 3985
AflII	CTTAAG	1 cut(s)	4262
AhlI	ACTAGT	2 cut(s)	1604, 3980
AjnI	CCWGG	3 cut(s)	379, 2803, 2818
AjuI	GAANNNNNNNTTGG	4 cut(s)	1193, 1225, 2437, 2469
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 1541, 1573
Alw21I	GWGCWC	4 cut(s)	881, 2916, 3178, 4317
AlwI	GGATC	4 cut(s)	1311, 2201, 3866, 4425
AlwNI	CAGNNNCTG	4 cut(s)	376, 2210, 2705, 4190
Ama87I	CYCGRG	2 cut(s)	1395, 4299
ApoI	RAATTY	9 cut(s)	274, 1265, 1285, 1589, 1829, 1939, 2515, 3355, 3951
Asp700I	GAANNNNTTC	4 cut(s)	2352, 3537, 3759, 4158
AspLEI	GCGC	4 cut(s)	211, 2433, 3016, 3714
AsuC2I	CCSGG	3 cut(s)	737, 830, 1002
AsuII	TTCGAA	2 cut(s)	976, 1196
AvaI	CYCGRG	2 cut(s)	1395, 4299
AvaII	GGWCC	6 cut(s)	52, 97, 175, 268, 412, 1666
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	3 cut(s)	301, 425, 3072
BaeI	ACNNNNGTAYC	4 cut(s)	1134, 1167, 2094, 2127
BalI	TGGCCA	2 cut(s)	2896, 3695
BanI	GGYRCC	7 cut(s)	422, 516, 2369, 3067, 3711, 4128, 4356
BanII	GRGCYC	3 cut(s)	830, 2916, 4317
BarI	GAAGNNNNNNTAC	4 cut(s)	1747, 1779, 3887, 3919
BauI	CACGAG	1 cut(s)	3666
BbsI	GAAGAC	3 cut(s)	51, 2001, 4415
Bbv12I	GWGCWC	4 cut(s)	881, 2916, 3178, 4317
BceAI	ACGGC	2 cut(s)	214, 236
BcgI	CGANNNNNNTGC	4 cut(s)	298, 332, 4100, 4134
BciT130I	CCWGG	3 cut(s)	381, 2805, 2820
BciVI	GTATCC	3 cut(s)	919, 1708, 2810
BclI	TGATCA	5 cut(s)	624, 1615, 1708, 1909, 2185
BcnI	CCSGG	3 cut(s)	737, 830, 1002
BcuI	ACTAGT	2 cut(s)	1604, 3980
BfoI	RGCGCY	2 cut(s)	2434, 3715
BfrI	CTTAAG	1 cut(s)	4262
BfuAI	ACCTGC	1 cut(s)	166
BfuI	GTATCC	3 cut(s)	919, 1708, 2810
BglII	AGATCT	1 cut(s)	3332
BmcAI	AGTACT	3 cut(s)	245, 314, 3985
Bme1390I	CCNGG	6 cut(s)	381, 737, 830, 1002, 2805, 2820
Bme18I	GGWCC	6 cut(s)	52, 97, 175, 268, 412, 1666
BmeT110I	CYCGRG	2 cut(s)	1395, 4299
BmrFI	CCNGG	6 cut(s)	381, 737, 830, 1002, 2805, 2820
BmrI	ACTGGG	2 cut(s)	1585, 3298
BmuI	ACTGGG	2 cut(s)	1585, 3298
BoxI	GACNNNNGTC	1 cut(s)	2136
BpiI	GAAGAC	3 cut(s)	51, 2001, 4415
BpmI	CTGGAG	2 cut(s)	511, 2628
Bpu10I	CCTNAGC	1 cut(s)	3036
Bpu14I	TTCGAA	2 cut(s)	976, 1196
BpuEI	CTTGAG	1 cut(s)	4370
BpuMI	CCSGG	3 cut(s)	737, 830, 1002
BsaAI	YACGTR	1 cut(s)	2307
BsaHI	GRCGYC	2 cut(s)	1685, 3712
BsaI	GGTCTC	2 cut(s)	745, 1802
Bse118I	RCCGGY	4 cut(s)	339, 701, 731, 842
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	2 cut(s)	2373, 3152
BseBI	CCWGG	3 cut(s)	381, 2805, 2820
BseMI	GCAATG	2 cut(s)	2373, 3152
BseRI	GAGGAG	6 cut(s)	418, 421, 559, 1237, 2924, 4061
BseSI	GKGCMC	3 cut(s)	301, 425, 3072
BseX3I	CGGCCG	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	3414
BsgI	GTGCAG	2 cut(s)	277, 2985
Bsh1236I	CGCG	5 cut(s)	134, 418, 670, 1148, 3014
Bsh1285I	CGRYCG	4 cut(s)	228, 232, 252, 4114
BshNI	GGYRCC	7 cut(s)	422, 516, 2369, 3067, 3711, 4128, 4356
BsiEI	CGRYCG	4 cut(s)	228, 232, 252, 4114
BsiHKAI	GWGCWC	4 cut(s)	881, 2916, 3178, 4317
BsiHKCI	CYCGRG	2 cut(s)	1395, 4299
BsiSI	CCGG	8 cut(s)	340, 702, 732, 737, 830, 843, 1001, 3565
BslFI	GGGAC	8 cut(s)	38, 209, 455, 521, 1037, 1385, 2857, 4444
BsmBI	CGTCTC	3 cut(s)	209, 1676, 2505
BsmFI	GGGAC	8 cut(s)	38, 209, 455, 521, 1037, 1385, 2857, 4444
BsmI	GAATGC	1 cut(s)	3490
Bso31I	GGTCTC	2 cut(s)	745, 1802
BsoBI	CYCGRG	2 cut(s)	1395, 4299
Bsp119I	TTCGAA	2 cut(s)	976, 1196
Bsp1286I	GDGCHC	8 cut(s)	301, 425, 830, 881, 2916, 3072, 3178, 4317
Bsp1407I	TGTACA	1 cut(s)	2018
Bsp19I	CCATGG	1 cut(s)	3696
BspFNI	CGCG	5 cut(s)	134, 418, 670, 1148, 3014
BspHI	TCATGA	2 cut(s)	2052, 4426
BspMAI	CTGCAG	4 cut(s)	693, 1219, 1663, 2854
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	4 cut(s)	1311, 2201, 3866, 4425
BspT104I	TTCGAA	2 cut(s)	976, 1196
BspT107I	GGYRCC	7 cut(s)	422, 516, 2369, 3067, 3711, 4128, 4356
BspTI	CTTAAG	1 cut(s)	4262
BspTNI	GGTCTC	2 cut(s)	745, 1802
BsrBI	CCGCTC	2 cut(s)	1059, 4362
BsrDI	GCAATG	2 cut(s)	2373, 3152
BsrFI	RCCGGY	4 cut(s)	339, 701, 731, 842
BsrGI	TGTACA	1 cut(s)	2018
BssAI	RCCGGY	4 cut(s)	339, 701, 731, 842
BssNI	GRCGYC	2 cut(s)	1685, 3712
BssSI	CACGAG	1 cut(s)	3666
BssT1I	CCWWGG	2 cut(s)	2141, 3696
Bst2BI	CACGAG	1 cut(s)	3666
Bst2UI	CCWGG	3 cut(s)	381, 2805, 2820
Bst6I	CTCTTC	4 cut(s)	1310, 1515, 2820, 4167
BstACI	GRCGYC	2 cut(s)	1685, 3712
BstAFI	CTTAAG	1 cut(s)	4262
BstAPI	GCANNNNNTGC	2 cut(s)	3149, 4190
BstAUI	TGTACA	1 cut(s)	2018
BstBAI	YACGTR	1 cut(s)	2307
BstBI	TTCGAA	2 cut(s)	976, 1196
BstC8I	GCNNGC	9 cut(s)	454, 515, 703, 733, 844, 2435, 2547, 3558, 4166
BstDSI	CCRYGG	4 cut(s)	132, 416, 1146, 3696
BstENI	CCTNNNNNAGG	2 cut(s)	1637, 2598
BstFNI	CGCG	5 cut(s)	134, 418, 670, 1148, 3014
BstH2I	RGCGCY	2 cut(s)	2434, 3715
BstHHI	GCGC	4 cut(s)	211, 2433, 3016, 3714
BstMCI	CGRYCG	4 cut(s)	228, 232, 252, 4114
BstNI	CCWGG	3 cut(s)	381, 2805, 2820
BstNSI	RCATGY	3 cut(s)	1018, 2788, 4168
BstPAI	GACNNNNGTC	1 cut(s)	2136
BstSCI	CCNGG	6 cut(s)	379, 735, 828, 1000, 2803, 2818
BstSLI	GKGCMC	3 cut(s)	301, 425, 3072
BstUI	CGCG	5 cut(s)	134, 418, 670, 1148, 3014
BstV2I	GAAGAC	3 cut(s)	51, 2001, 4415
BstX2I	RGATCY	4 cut(s)	1303, 2206, 3332, 3871
BstXI	CCANNNNNNTGG	1 cut(s)	3703
BstYI	RGATCY	4 cut(s)	1303, 2206, 3332, 3871
BstZI	CGGCCG	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	357
BsuI	GTATCC	3 cut(s)	919, 1708, 2810
BtgI	CCRYGG	4 cut(s)	132, 416, 1146, 3696
BtgZI	GCGATG	1 cut(s)	1475
BtsI	GCAGTG	3 cut(s)	1458, 1930, 3205
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	9 cut(s)	454, 515, 703, 733, 844, 2435, 2547, 3558, 4166
CaiI	CAGNNNCTG	4 cut(s)	376, 2210, 2705, 4190
CciI	TCATGA	2 cut(s)	2052, 4426
CfoI	GCGC	4 cut(s)	211, 2433, 3016, 3714
Cfr10I	RCCGGY	4 cut(s)	339, 701, 731, 842
Cfr42I	CCGCGG	3 cut(s)	135, 419, 1149
CseI	GACGC	2 cut(s)	820, 1606
Csp6I	GTAC	8 cut(s)	244, 313, 331, 1158, 2019, 2754, 3020, 3984
CviQI	GTAC	8 cut(s)	244, 313, 331, 1158, 2019, 2754, 3020, 3984
DinI	GGCGCC	1 cut(s)	3713
DraI	TTTAAA	1 cut(s)	3292
EaeI	YGGCCR	4 cut(s)	249, 729, 2894, 3693
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	4 cut(s)	1310, 1515, 2820, 4167
EarI	CTCTTC	4 cut(s)	1310, 1515, 2820, 4167
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	2 cut(s)	2914, 4315
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	2141, 3696
Eco147I	AGGCCT	1 cut(s)	2992
Eco24I	GRGCYC	3 cut(s)	830, 2916, 4317
Eco31I	GGTCTC	2 cut(s)	745, 1802
Eco32I	GATATC	1 cut(s)	2266
Eco47I	GGWCC	6 cut(s)	52, 97, 175, 268, 412, 1666
Eco52I	CGGCCG	1 cut(s)	249
Eco53kI	GAGCTC	2 cut(s)	2914, 4315
Eco57I	CTGAAG	5 cut(s)	1532, 1622, 2250, 3342, 3816
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	2 cut(s)	1395, 4299
EcoICRI	GAGCTC	2 cut(s)	2914, 4315
EcoNI	CCTNNNNNAGG	2 cut(s)	1637, 2598
EcoO109I	RGGNCCY	2 cut(s)	175, 1666
EcoRI	GAATTC	1 cut(s)	3951
EcoRII	CCWGG	3 cut(s)	379, 2803, 2818
EcoRV	GATATC	1 cut(s)	2266
EcoT14I	CCWWGG	2 cut(s)	2141, 3696
EcoT22I	ATGCAT	1 cut(s)	3492
EcoT38I	GRGCYC	3 cut(s)	830, 2916, 4317
EgeI	GGCGCC	1 cut(s)	3713
EheI	GGCGCC	1 cut(s)	3713
ErhI	CCWWGG	2 cut(s)	2141, 3696
Esp3I	CGTCTC	3 cut(s)	209, 1676, 2505
FaqI	GGGAC	8 cut(s)	38, 209, 455, 521, 1037, 1385, 2857, 4444
FauI	CCCGC	9 cut(s)	118, 197, 411, 423, 847, 1052, 2359, 4077, 4161
FauNDI	CATATG	2 cut(s)	1257, 2015
FbaI	TGATCA	5 cut(s)	624, 1615, 1708, 1909, 2185
FriOI	GRGCYC	3 cut(s)	830, 2916, 4317
FseI	GGCCGGCC	1 cut(s)	735
GlaI	GCGC	4 cut(s)	210, 2432, 3015, 3713
GsaI	CCCAGC	1 cut(s)	3418
GsuI	CTGGAG	2 cut(s)	511, 2628
HaeII	RGCGCY	2 cut(s)	2434, 3715
HapII	CCGG	8 cut(s)	340, 702, 732, 737, 830, 843, 1001, 3565
HgaI	GACGC	2 cut(s)	820, 1606
HhaI	GCGC	4 cut(s)	211, 2433, 3016, 3714
Hin1I	GRCGYC	2 cut(s)	1685, 3712
Hin6I	GCGC	4 cut(s)	209, 2431, 3014, 3712
HinP1I	GCGC	4 cut(s)	209, 2431, 3014, 3712
HincII	GTYRAC	3 cut(s)	475, 2199, 3185
HindII	GTYRAC	3 cut(s)	475, 2199, 3185
HindIII	AAGCTT	3 cut(s)	2351, 2450, 3757
HpaII	CCGG	8 cut(s)	340, 702, 732, 737, 830, 843, 1001, 3565
Hpy166II	GTNNAC	8 cut(s)	84, 475, 765, 1507, 2199, 2932, 3185, 3800
Hpy8I	GTNNAC	8 cut(s)	84, 475, 765, 1507, 2199, 2932, 3185, 3800
HpyCH4IV	ACGT	6 cut(s)	477, 1685, 2306, 2986, 3647, 4468
HpySE526I	ACGT	6 cut(s)	477, 1685, 2306, 2986, 3647, 4468
Hsp92I	GRCGYC	2 cut(s)	1685, 3712
HspAI	GCGC	4 cut(s)	209, 2431, 3014, 3712
KasI	GGCGCC	1 cut(s)	3711
KroI	GCCGGC	3 cut(s)	701, 731, 842
KroNI	GCCGGC	3 cut(s)	703, 733, 844
Ksp22I	TGATCA	5 cut(s)	624, 1615, 1708, 1909, 2185
KspI	CCGCGG	3 cut(s)	135, 419, 1149
LmnI	GCTCC	9 cut(s)	306, 710, 2657, 2693, 2911, 2954, 3037, 4048, 4312
MaeII	ACGT	6 cut(s)	477, 1685, 2306, 2986, 3647, 4468
MbiI	CCGCTC	2 cut(s)	1059, 4362
MfeI	CAATTG	1 cut(s)	4451
MflI	RGATCY	4 cut(s)	1303, 2206, 3332, 3871
MhlI	GDGCHC	8 cut(s)	301, 425, 830, 881, 2916, 3072, 3178, 4317
MlsI	TGGCCA	2 cut(s)	2896, 3695
MluNI	TGGCCA	2 cut(s)	2896, 3695
Mly113I	GGCGCC	1 cut(s)	3712
MmeI	TCCRAC	5 cut(s)	636, 1227, 2052, 2468, 3838
Mox20I	TGGCCA	2 cut(s)	2896, 3695
Mph1103I	ATGCAT	1 cut(s)	3492
MreI	CGCCGGCG	1 cut(s)	842
MroNI	GCCGGC	3 cut(s)	701, 731, 842
MroXI	GAANNNNTTC	4 cut(s)	2352, 3537, 3759, 4158
MscI	TGGCCA	2 cut(s)	2896, 3695
MslI	CAYNNNNRTG	2 cut(s)	3304, 4163
Msp20I	TGGCCA	2 cut(s)	2896, 3695
MspA1I	CMGCKG	5 cut(s)	134, 418, 513, 1148, 3805
MspCI	CTTAAG	1 cut(s)	4262
MspI	CCGG	8 cut(s)	340, 702, 732, 737, 830, 843, 1001, 3565
MspR9I	CCNGG	6 cut(s)	381, 737, 830, 1002, 2805, 2820
MunI	CAATTG	1 cut(s)	4451
Mva1269I	GAATGC	1 cut(s)	3490
MvaI	CCWGG	3 cut(s)	381, 2805, 2820
MvnI	CGCG	5 cut(s)	134, 418, 670, 1148, 3014
NaeI	GCCGGC	3 cut(s)	703, 733, 844
NarI	GGCGCC	1 cut(s)	3712
NciI	CCSGG	3 cut(s)	737, 830, 1002
NcoI	CCATGG	1 cut(s)	3696
NdeI	CATATG	2 cut(s)	1257, 2015
NgoMIV	GCCGGC	3 cut(s)	701, 731, 842
NmeAIII	GCCGAG	2 cut(s)	104, 227
NsiI	ATGCAT	1 cut(s)	3492
NspI	RCATGY	3 cut(s)	1018, 2788, 4168
NspV	TTCGAA	2 cut(s)	976, 1196
PaeI	GCATGC	1 cut(s)	4168
PaeR7I	CTCGAG	1 cut(s)	4299
PagI	TCATGA	2 cut(s)	2052, 4426
PceI	AGGCCT	1 cut(s)	2992
PcsI	WCGNNNNNNNCGW	6 cut(s)	68, 71, 74, 77, 483, 552
PctI	GAATGC	1 cut(s)	3490
PdiI	GCCGGC	3 cut(s)	703, 733, 844
PdmI	GAANNNNTTC	4 cut(s)	2352, 3537, 3759, 4158
PflMI	CCANNNNNTGG	2 cut(s)	409, 1470
Ple19I	CGATCG	2 cut(s)	232, 4114
PluTI	GGCGCC	1 cut(s)	3715
Ppu21I	YACGTR	1 cut(s)	2307
PpuMI	RGGWCCY	2 cut(s)	175, 1666
PshAI	GACNNNNGTC	1 cut(s)	2136
Psp124BI	GAGCTC	2 cut(s)	2916, 4317
Psp1406I	AACGTT	1 cut(s)	3647
Psp5II	RGGWCCY	2 cut(s)	175, 1666
Psp6I	CCWGG	3 cut(s)	379, 2803, 2818
PspFI	CCCAGC	1 cut(s)	3414
PspGI	CCWGG	3 cut(s)	379, 2803, 2818
PspPPI	RGGWCCY	2 cut(s)	175, 1666
PsrI	GAACNNNNNNTAC	2 cut(s)	2746, 2778
PstI	CTGCAG	4 cut(s)	693, 1219, 1663, 2854
PstNI	CAGNNNCTG	4 cut(s)	376, 2210, 2705, 4190
PsuI	RGATCY	4 cut(s)	1303, 2206, 3332, 3871
PvuI	CGATCG	2 cut(s)	232, 4114
PvuII	CAGCTG	2 cut(s)	513, 3805
RigI	GGCCGGCC	1 cut(s)	735
RsaI	GTAC	8 cut(s)	245, 314, 332, 1159, 2020, 2755, 3021, 3985
RsaNI	GTAC	8 cut(s)	244, 313, 331, 1158, 2019, 2754, 3020, 3984
RseI	CAYNNNNRTG	2 cut(s)	3304, 4163
SacI	GAGCTC	2 cut(s)	2916, 4317
SacII	CCGCGG	3 cut(s)	135, 419, 1149
ScaI	AGTACT	3 cut(s)	245, 314, 3985
ScrFI	CCNGG	6 cut(s)	381, 737, 830, 1002, 2805, 2820
SduI	GDGCHC	8 cut(s)	301, 425, 830, 881, 2916, 3072, 3178, 4317
SfoI	GGCGCC	1 cut(s)	3713
Sfr274I	CTCGAG	1 cut(s)	4299
Sfr303I	CCGCGG	3 cut(s)	135, 419, 1149
SfuI	TTCGAA	2 cut(s)	976, 1196
SgrAI	CRCCGGYG	1 cut(s)	842
SgrBI	CCGCGG	3 cut(s)	135, 419, 1149
SinI	GGWCC	6 cut(s)	52, 97, 175, 268, 412, 1666
SlaI	CTCGAG	1 cut(s)	4299
SmiMI	CAYNNNNRTG	2 cut(s)	3304, 4163
SmlI	CTYRAG	3 cut(s)	4262, 4299, 4349
SmoI	CTYRAG	3 cut(s)	4262, 4299, 4349
SpeI	ACTAGT	2 cut(s)	1604, 3980
SphI	GCATGC	1 cut(s)	4168
SseBI	AGGCCT	1 cut(s)	2992
SspDI	GGCGCC	1 cut(s)	3711
SspI	AATATT	1 cut(s)	2127
SstI	GAGCTC	2 cut(s)	2916, 4317
StuI	AGGCCT	1 cut(s)	2992
StyD4I	CCNGG	6 cut(s)	379, 735, 828, 1000, 2803, 2818
StyI	CCWWGG	2 cut(s)	2141, 3696
TaiI	ACGT	6 cut(s)	480, 1688, 2309, 2989, 3650, 4471
TatI	WGTACW	5 cut(s)	243, 312, 2018, 3019, 3983
TauI	GCSGC	5 cut(s)	148, 164, 167, 170, 204
TspGWI	ACGGA	8 cut(s)	110, 607, 646, 712, 1468, 2087, 2310, 2387
Van91I	CCANNNNNTGG	2 cut(s)	409, 1470
Vha464I	CTTAAG	1 cut(s)	4262
VpaK11BI	GGWCC	6 cut(s)	52, 97, 175, 268, 412, 1666
XagI	CCTNNNNNAGG	2 cut(s)	1637, 2598
XapI	RAATTY	9 cut(s)	274, 1265, 1285, 1589, 1829, 1939, 2515, 3355, 3951
XbaI	TCTAGA	2 cut(s)	3866, 4012
XceI	RCATGY	3 cut(s)	1018, 2788, 4168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3622
XhoI	CTCGAG	1 cut(s)	4299
XmnI	GAANNNNTTC	4 cut(s)	2352, 3537, 3759, 4158
ZraI	GACGTC	1 cut(s)	1686
ZrmI	AGTACT	3 cut(s)	245, 314, 3985
Zsp2I	ATGCAT	1 cut(s)	3492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.