Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Reverse (-)

62195684 .. 62203162

Gene Structure 7479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG393200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5076 bp

ATGAAGCACCAGCAGAGCAGCTCATCGTCACCGTCGCAGTCGTCTGAGGCGGTCCCGTCGTCGTCGTCGTCCACTGTGACGACGGACCAATCACATCCCGCCACCTCGAACTCGGCATCCGCGGCGGAGAAGCCGCTGCCAATACCGGCGGCGGCGGCGGAGGACCTTGCGGTGGGGTCGAGGGACGGCGGCGGGGCGCAGGAGACGGTGACGGTCGATCGGAGAGGGGAGTACTCGGCCGTGTGCAGATGGACGGTCCAGAATTTTCCGAGAATCAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTGGGAGGCTACGATTGCCGGTTGCTAATATACCCTAAGGGTGACTCACAGGCTCTGCCTGGGTACATCTCCATCTACCTCCAAATCATGGACCCGCGGGGCACCTCCTCCTCCAAATGGGACTGCTTCGCCAGCTACCGCCTCGCCATCGTCAACGTCGCCGACGATTCCAAGACCATTCACAGGGACAGCTGGCACCGCTTCTCCAGCAAGAAGAAATCACACGGTTGGTGCGATTTCACCCGCTCCTCTACTGTTTTTGATTCCAAGTTAGGTTATCTTTTCAATTCCGACTCCGTTTTGATCACCGCCGATATTTTGATATTGAATGAGTCCGTTAATTTCACGCGAGATAATAATAACGAGCTGCAGTCATCTGCCGGCTCCATGATGTCATCTTCCGTCGTGGCCAGCCCGGTCTCCGATGTGTTGAGTGGCAAGTTCACTTGGAAGGTGCATAACTTTAGCTTGTTTAAGGATATGATTAAGACTCAGAAGATAATGAGCCCGGTGTTCCCCGCCGGAGAGTGTAATTTGAGGATTAGTGTTTATCAGAGCACTGTGAATGCTGTAGAGTATCTATCAATGTGTTTGGAGAGCAAGGATACTGACAAGACGGTTGTGTTGTCCGATAGAAGTTGTTGGTGTTTGTTTCGAATGTCTGTGTTGAACCAGAAGCCGGGGTCTAATCACATTCACAGGGACTCGTATGGGAGGTTTGCTGCCGATAATAAGAGCGGGGATAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTCAGATTTCGTTGGGCCAGAGTCGGGGTTTTTGGCTGATGATACCGCGGTGTTTAGTACCTCATTTCATGTGATAAAGGAGTTTAGTAGCTTTTCGAAGAATGGGGGATTGACTGCAGGGAGGAGTAGTAGTGGGGCGAGGAAGTTGGATGGACATATGGGGAAATTTACTTGGAGGATTGAAAATTTCACAAAGTTGAAGGATCTATTAAAGAAGAGGAAGATAACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGGGACTGTCGGCTCATTGTTTATCCCCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACAGATTCACGGAACACTGCCAGTGATTGGAGTTGTTTTGTGGGTCATCGCTTGTCTGTTGTGAACCAGAAGATGGAAGAGAAGTCTGTCACAAAGGAGTCTCAGAACCGCTACTCCAAAGCTGCAAAGGACTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTCTTTGATCAAGATTCAGGGTTCCTTGTTCAGGACACTGTTGTATTCTCTGCAGAGGTCCTTATATTGAAAGAGACATCAATTATGCAGGATTTGATTGATCAGGATACCGAGTCCGCTACCCAGATTGACAAGAATGTAAAACGAAGCTCTTTTACATGGAAGGTGGAGAACTTCCTGTCTTTTAAGGAAATAATGGAGACCCGAAAAATCTTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGGGTATATGAGTCCTTTGACACCATATGTATTTATTTGGAGAGTGATCAGTCAGTTGGCAGTGATCTGGACAAAAATTTCTGGGTGCGATATAGGATGGCTGTTGTGAATCAAAAGAACCCTGCCAAAACTGTGTGGAAGGAGTCTTCCATATGTACAAAGACTTGGAACAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCAGATGCAGGGTTTCTTGTCCGTGATACCGTTGTTTTTGTATGTGAAATATTGGACTGCTGTCCTTGGTTTGAGTTTTCAGACCTAGAGGTTTTTGCTTCCGAGGATGATCAGGATGCGTTGACAACAGATCCTGATGAACTTGTTGATTCTGAAGATAGTGAAGGAATAGGTGGTGACGAAGAAGATATCTTTAGAAACCTGCTTTCCAGAGCTGGATTTCACCTCACATATGGAGATAATCCGTCACAGCCACAGGTCACTTTACGAGAAAAGCTTCTGATGGATGCGGGTGCCATTGCTGGTTTCCTGACTGGACTCCGTGTTTATCTTGATGACCCTGCTAAAGTAAAGCGCCTGCTTCTTCCAACCAAGCTTTCTGGTAGCGGTGATGGAATGAAGGTCTTGAAGAATGATGAATCTTCTCCTAGTTTGATGAATTTACTAATGGGAGTCAAAGTGTTGCAGCAGGCTATTATTGATTTACTTTTGGACATTATGGTTGAGTGTTGCCAACCTACAGAAGGGAGTTGTAATGGTGATTTATCTGATGGAAACTCAAAAACTCCAGATGGAAGTGGAGCTGCCAGTCCGCTGCAATCTGATAGAGAAAATGGAGCAACAGAATCTGTGCATTGTCCCGTGTATGAGCGATTGGATGCCAGTGTTGATGAAAGTACCAGTGCTTCGGCTGTTCAGAGTTCTGACATGCACGGGGTTGGTATCCCAGGAAAAACTCTTCCTGGGCAGCCAATTTACCCCCCAGAAACATCTGCAGGGGCATCAGAAAATGTGTCCCTTCGTTCAAAGACTAAGTGGCCAGAGCAATCTGAGGAGCTCTTAGGATTGATTGTAAACTCACTGAGAGCTTTGGATGGAGCTGTTCCACAAGGCTGTCCTGAACCAAGACGTAGGCCTCAGTCTGCACAAAAGATCGCTCTTGTACTGGATAAAGCTCCTAAGCATTTGCAGCCTGATCTGGTGTCTTTGGTGCCCAAGTTGGTTGAACATTCAGAGCATCCACTTGCTGCCTTTGCACTTATTGAACGATTGCAAAAGCCAGATGCAGAACTTGCATTGCGGACACCTGTTTTCGGTGCTCTGAGTCAACTGGACTGTGGCAGTGAAGTGTGGGAACGGGTTTTATCTCAATCTTTAGAGTTTTTGTCAGATTCAAACGATGAACCTCTTGCTGCAACCATAGATTTCATATTTAAAGCTGCATCCCAGTGCCAACACCTACCTGAAGCAGTCAGATCTGTTCGTGTTAGGCTAAAGAATTTGGGTGTCGATGTTTCTCCTTGTGTCCTTGAATTATTGAGTAGAACTGTAAATAGCTGGGGAGATGTTGCTGAAACCATACTTAGAGATATTGATTGTGATGATGATTTTGGTGATAGTTGCTCGACTATGCATTCTGGGCTTTTCTTGTTTGGAGAACATGGGCCTTGTTCGGAACGGTTTCATTTGGTGGATGAGCAGGCTTTCCGGCCTTGTCACCATTTTTCTGATATTTACATCTTGATTGAGATGTTATCCATACCTTGTCTGGCTGTAGAAGCCTCTCAAACGTTTGAGAGAGCTGTAGCTCGTGGTGCTATTGTGGCTCATTCTGTGGCCATGGTTTTGGAAAGGCGCCTTGCTCAAAGATTGAACCTTGATGCCAGATTTGTTGCGGAAAGCTTTCAGCAGACAGATTTGGTAGTAGAGGGAGAAGCCAGTGAACAGCTGAGAGTCCAACAAGACGATTTTACTTCAGTTCTTGGTCTTGCTGAAACATTGGCCCTCTCTAGAGATCCTTGTGTTAAGGGATTTGTGAAGATGCTCTACACATTATTGTTCAAATGGTATGCTGACGAATCTTATCGAGGGAGAATTCTAAAGAGACTTGTTGATCGTGCCACTAGTACTACAGATAGTAGTCGTGAAATTGATCTAGATTTTGATATATTGGTGACACTAGCTTCTGAGGAGCAGGAAATTGTTAGACCAGTTTTGAGTATGATGCGGGAGGTTGCTGAACTTGCAAATGTCGATCGGGCTGCTCTTTGGCACCAGTTATGTGCTAGTGAAGATGAAATCATTCGCATGCGGGAAGAGAGGAAAGCAGAAACTGCTAACATGGCTAGAGAAAAAGCTGTTATATTGCAAAAACTGAGTGAATCCGAGGCCACTAACAATCGTCTTAAGTCTGAAATGAAGGCTGAGAATGACCGCTTTGCTCGAGAAAAGAAGGAGCTCTCGGAACGAATACAAGAAGTTGAGAGTCAGCTTGAGTGGCACCGCTCAGAGCGAGATGATGAAATTAGAAAGCTCACTACAGATAGGAAAGTGTTTCAGGATCGTCTTCATGATGCAGAGACACAACTCTCTCAATTGAAGTCCCGAAAACGTGATGAATTGAAGAAAGTTGTGAAGGAGAAAAATGCTCTAGCTGAAAGGTTGAAGGGTGCTGAAGCTGCACGTAAAAGATTTGATGAAGAACTTAAACGGTATGCCACAGAGAAGGTGACTCGAGAGGAAATTCGACAATCTCTGGAGGATGAAGTACGGAGACTGACACAAACAGTAGGACAAACAGAAGGAGAGAAACGAGAGAAGGAAGAGCAGGTTGCTCGGTGTGAAGCCTATATTGATGGGATGGAATCAAAACTGCAGGCCTGCCAGCAATATATTCATACCCTTGAGGCTTCACTTCAGGAAGAAATGTCCCGGCATGCTCCTCTGTATGGTGCTGGTTTGGAGGCATTATCAATGAAGGAGTTGGAGACACTGTCCCGTATCCATGAAGAAGGGCTCAGGCAGATCCATACCCTTCAGCAGCGTAAGGGTAGTCCAGCTGGCAGTCCCCTTGTAAGCCCGCACACGCTCCCACACAATCATGGGCTATATCCTGCCGCACCCCCCCAAATGCCCGTTGGAGTGCCTCCTTCACTCATTCCAAACGGTGTTGGGATTCACAGCAATGGGCATGTGAATGGTGCTGTTGGACCCTGGTTCAACCATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

1691

Amino Acids

188.81

Weight (kDa)

5.48

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	83 - 209	5.5e-20	MATH domain
MATH	PF00917	87 - 211	3.6e-08	MATH domain
MATH_2	PF22486	250 - 382	1.6e-19	MATH domain
MATH_2	PF22486	418 - 552	1.2e-29	MATH domain
MATH	PF00917	448 - 554	3e-09	MATH domain
MATH_2	PF22486	583 - 705	5e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2274, 4663
AccB1I	GGYRCC	7 cut(s)	410, 504, 2357, 3055, 3699, 4116, 4344
AccB7I	CCANNNNNTGG	3 cut(s)	397, 1458, 1504
AccBSI	CCGCTC	3 cut(s)	555, 1047, 4350
AccII	CGCG	4 cut(s)	122, 406, 658, 1136
AclI	AACGTT	1 cut(s)	3635
AclWI	GGATC	5 cut(s)	1299, 2189, 3854, 4413, 4864
AcoI	YGGCCR	4 cut(s)	237, 717, 2882, 3681
AcuI	CTGAAG	6 cut(s)	2238, 3330, 3804, 4539, 4745, 4865
AcyI	GRCGYC	1 cut(s)	3700
AfaI	GTAC	9 cut(s)	233, 302, 374, 1147, 2008, 2743, 3009, 3973, 4614
AflII	CTTAAG	1 cut(s)	4250
AhlI	ACTAGT	2 cut(s)	1592, 3968
AjnI	CCWGG	4 cut(s)	367, 2791, 2806, 5057
AjuI	GAANNNNNNNTTGG	2 cut(s)	2425, 2457
AloI	GAACNNNNNNTCC	4 cut(s)	101, 133, 1529, 1561
Alw21I	GWGCWC	4 cut(s)	869, 2904, 3166, 4305
AlwI	GGATC	5 cut(s)	1299, 2189, 3854, 4413, 4864
AlwNI	CAGNNNCTG	4 cut(s)	364, 2198, 2693, 4178
Ama87I	CYCGRG	3 cut(s)	1383, 4287, 4578
Asp700I	GAANNNNTTC	4 cut(s)	2340, 3525, 3747, 4146
AspLEI	GCGC	3 cut(s)	199, 2421, 3702
AsuC2I	CCSGG	4 cut(s)	725, 818, 990, 4777
AsuII	TTCGAA	2 cut(s)	964, 1184
AvaI	CYCGRG	3 cut(s)	1383, 4287, 4578
AvaII	GGWCC	7 cut(s)	52, 85, 163, 256, 400, 1654, 5054
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	3 cut(s)	289, 413, 3060
BaeI	ACNNNNGTAYC	4 cut(s)	1122, 1155, 2082, 2115
BalI	TGGCCA	3 cut(s)	719, 2884, 3683
BanI	GGYRCC	7 cut(s)	410, 504, 2357, 3055, 3699, 4116, 4344
BanII	GRGCYC	4 cut(s)	818, 2904, 4305, 4863
BarI	GAAGNNNNNNTAC	6 cut(s)	1735, 1767, 2734, 2766, 3875, 3907
BauI	CACGAG	1 cut(s)	3654
BbsI	GAAGAC	2 cut(s)	1989, 4403
Bbv12I	GWGCWC	4 cut(s)	869, 2904, 3166, 4305
BceAI	ACGGC	2 cut(s)	202, 224
BcgI	CGANNNNNNTGC	6 cut(s)	286, 320, 4088, 4122, 4661, 4695
BciT130I	CCWGG	4 cut(s)	369, 2793, 2808, 5059
BciVI	GTATCC	4 cut(s)	907, 1696, 2798, 4856
BclI	TGATCA	5 cut(s)	612, 1603, 1696, 1897, 2173
BcnI	CCSGG	4 cut(s)	725, 818, 990, 4777
BcuI	ACTAGT	2 cut(s)	1592, 3968
BfoI	RGCGCY	2 cut(s)	2422, 3703
BfrI	CTTAAG	1 cut(s)	4250
BfuAI	ACCTGC	2 cut(s)	2274, 4663
BfuI	GTATCC	4 cut(s)	907, 1696, 2798, 4856
BglII	AGATCT	1 cut(s)	3320
BmcAI	AGTACT	3 cut(s)	233, 302, 3973
Bme1390I	CCNGG	8 cut(s)	369, 725, 818, 990, 2793, 2808, 4777, 5059
Bme18I	GGWCC	7 cut(s)	52, 85, 163, 256, 400, 1654, 5054
BmeT110I	CYCGRG	3 cut(s)	1383, 4287, 4578
BmrFI	CCNGG	8 cut(s)	369, 725, 818, 990, 2793, 2808, 4777, 5059
BmrI	ACTGGG	2 cut(s)	1573, 3286
BmuI	ACTGGG	2 cut(s)	1573, 3286
BoxI	GACNNNNGTC	1 cut(s)	2124
BpiI	GAAGAC	2 cut(s)	1989, 4403
BpmI	CTGGAG	3 cut(s)	499, 2616, 4622
Bpu10I	CCTNAGC	2 cut(s)	3024, 4862
Bpu14I	TTCGAA	2 cut(s)	964, 1184
BpuEI	CTTGAG	2 cut(s)	4358, 4769
BpuMI	CCSGG	4 cut(s)	725, 818, 990, 4777
BsaAI	YACGTR	1 cut(s)	4529
BsaHI	GRCGYC	1 cut(s)	3700
BsaI	GGTCTC	2 cut(s)	733, 1790
Bse118I	RCCGGY	3 cut(s)	145, 327, 689
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	3 cut(s)	2361, 3140, 5035
BseBI	CCWGG	4 cut(s)	369, 2793, 2808, 5059
BseMI	GCAATG	3 cut(s)	2361, 3140, 5035
BseRI	GAGGAG	7 cut(s)	406, 409, 547, 1225, 2912, 4049, 4776
BseSI	GKGCMC	3 cut(s)	289, 413, 3060
BseX3I	CGGCCG	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	3402
BsgI	GTGCAG	3 cut(s)	265, 2973, 4509
Bsh1236I	CGCG	4 cut(s)	122, 406, 658, 1136
Bsh1285I	CGRYCG	4 cut(s)	216, 220, 240, 4102
BshNI	GGYRCC	7 cut(s)	410, 504, 2357, 3055, 3699, 4116, 4344
BsiEI	CGRYCG	4 cut(s)	216, 220, 240, 4102
BsiHKAI	GWGCWC	4 cut(s)	869, 2904, 3166, 4305
BsiHKCI	CYCGRG	3 cut(s)	1383, 4287, 4578
BsiSI	CCGG	9 cut(s)	146, 328, 690, 725, 818, 831, 989, 3553, 4777
BsmBI	CGTCTC	1 cut(s)	197
BsmI	GAATGC	2 cut(s)	880, 3478
Bso31I	GGTCTC	2 cut(s)	733, 1790
BsoBI	CYCGRG	3 cut(s)	1383, 4287, 4578
Bsp119I	TTCGAA	2 cut(s)	964, 1184
Bsp1286I	GDGCHC	9 cut(s)	289, 413, 818, 869, 2904, 3060, 3166, 4305, 4863
Bsp1407I	TGTACA	1 cut(s)	2006
Bsp19I	CCATGG	1 cut(s)	3684
BspFNI	CGCG	4 cut(s)	122, 406, 658, 1136
BspHI	TCATGA	2 cut(s)	2040, 4414
BspMAI	CTGCAG	5 cut(s)	681, 1207, 1651, 2842, 4722
BspMI	ACCTGC	2 cut(s)	2274, 4663
BspPI	GGATC	5 cut(s)	1299, 2189, 3854, 4413, 4864
BspQI	GCTCTTC	1 cut(s)	4662
BspT104I	TTCGAA	2 cut(s)	964, 1184
BspT107I	GGYRCC	7 cut(s)	410, 504, 2357, 3055, 3699, 4116, 4344
BspTI	CTTAAG	1 cut(s)	4250
BspTNI	GGTCTC	2 cut(s)	733, 1790
BsrBI	CCGCTC	3 cut(s)	555, 1047, 4350
BsrDI	GCAATG	3 cut(s)	2361, 3140, 5035
BsrFI	RCCGGY	3 cut(s)	145, 327, 689
BsrGI	TGTACA	1 cut(s)	2006
BssAI	RCCGGY	3 cut(s)	145, 327, 689
BssNI	GRCGYC	1 cut(s)	3700
BssSI	CACGAG	1 cut(s)	3654
BssT1I	CCWWGG	2 cut(s)	2129, 3684
Bst2BI	CACGAG	1 cut(s)	3654
Bst2UI	CCWGG	4 cut(s)	369, 2793, 2808, 5059
Bst6I	CTCTTC	5 cut(s)	1298, 1503, 2808, 4155, 4662
BstACI	GRCGYC	1 cut(s)	3700
BstAFI	CTTAAG	1 cut(s)	4250
BstAPI	GCANNNNNTGC	2 cut(s)	3137, 4178
BstAUI	TGTACA	1 cut(s)	2006
BstBAI	YACGTR	1 cut(s)	4529
BstBI	TTCGAA	2 cut(s)	964, 1184
BstDSI	CCRYGG	4 cut(s)	120, 404, 1134, 3684
BstENI	CCTNNNNNAGG	2 cut(s)	1625, 2586
BstFNI	CGCG	4 cut(s)	122, 406, 658, 1136
BstH2I	RGCGCY	2 cut(s)	2422, 3703
BstHHI	GCGC	3 cut(s)	199, 2421, 3702
BstMCI	CGRYCG	4 cut(s)	216, 220, 240, 4102
BstNI	CCWGG	4 cut(s)	369, 2793, 2808, 5059
BstNSI	RCATGY	4 cut(s)	2776, 4156, 4784, 5039
BstPAI	GACNNNNGTC	1 cut(s)	2124
BstSCI	CCNGG	8 cut(s)	367, 723, 816, 988, 2791, 2806, 4775, 5057
BstSLI	GKGCMC	3 cut(s)	289, 413, 3060
BstUI	CGCG	4 cut(s)	122, 406, 658, 1136
BstV2I	GAAGAC	2 cut(s)	1989, 4403
BstX2I	RGATCY	5 cut(s)	1291, 2194, 3320, 3859, 4869
BstXI	CCANNNNNNTGG	1 cut(s)	3691
BstYI	RGATCY	5 cut(s)	1291, 2194, 3320, 3859, 4869
BstZI	CGGCCG	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	4 cut(s)	907, 1696, 2798, 4856
BtgI	CCRYGG	4 cut(s)	120, 404, 1134, 3684
BtgZI	GCGATG	1 cut(s)	1463
BtsI	GCAGTG	3 cut(s)	1446, 1918, 3193
BveI	ACCTGC	2 cut(s)	2274, 4663
CaiI	CAGNNNCTG	4 cut(s)	364, 2198, 2693, 4178
CciI	TCATGA	2 cut(s)	2040, 4414
CfoI	GCGC	3 cut(s)	199, 2421, 3702
Cfr10I	RCCGGY	3 cut(s)	145, 327, 689
Cfr42I	CCGCGG	3 cut(s)	123, 407, 1137
CseI	GACGC	1 cut(s)	1594
Csp6I	GTAC	9 cut(s)	232, 301, 373, 1146, 2007, 2742, 3008, 3972, 4613
CviQI	GTAC	9 cut(s)	232, 301, 373, 1146, 2007, 2742, 3008, 3972, 4613
DinI	GGCGCC	1 cut(s)	3701
DraI	TTTAAA	1 cut(s)	3280
EaeI	YGGCCR	4 cut(s)	237, 717, 2882, 3681
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	5 cut(s)	1298, 1503, 2808, 4155, 4662
EarI	CTCTTC	5 cut(s)	1298, 1503, 2808, 4155, 4662
EciI	GGCGGA	2 cut(s)	140, 173
Ecl136II	GAGCTC	2 cut(s)	2902, 4303
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	2129, 3684
Eco147I	AGGCCT	2 cut(s)	2980, 4724
Eco24I	GRGCYC	4 cut(s)	818, 2904, 4305, 4863
Eco31I	GGTCTC	2 cut(s)	733, 1790
Eco32I	GATATC	1 cut(s)	2254
Eco47I	GGWCC	7 cut(s)	52, 85, 163, 256, 400, 1654, 5054
Eco52I	CGGCCG	1 cut(s)	237
Eco53kI	GAGCTC	2 cut(s)	2902, 4303
Eco57I	CTGAAG	6 cut(s)	2238, 3330, 3804, 4539, 4745, 4865
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	3 cut(s)	1383, 4287, 4578
EcoICRI	GAGCTC	2 cut(s)	2902, 4303
EcoNI	CCTNNNNNAGG	2 cut(s)	1625, 2586
EcoO109I	RGGNCCY	2 cut(s)	163, 1654
EcoRI	GAATTC	1 cut(s)	3939
EcoRII	CCWGG	4 cut(s)	367, 2791, 2806, 5057
EcoRV	GATATC	1 cut(s)	2254
EcoT14I	CCWWGG	2 cut(s)	2129, 3684
EcoT22I	ATGCAT	1 cut(s)	3480
EcoT38I	GRGCYC	4 cut(s)	818, 2904, 4305, 4863
EgeI	GGCGCC	1 cut(s)	3701
EheI	GGCGCC	1 cut(s)	3701
ErhI	CCWWGG	2 cut(s)	2129, 3684
Esp3I	CGTCTC	1 cut(s)	197
FauNDI	CATATG	4 cut(s)	1245, 1877, 2003, 2296
FbaI	TGATCA	5 cut(s)	612, 1603, 1696, 1897, 2173
FriOI	GRGCYC	4 cut(s)	818, 2904, 4305, 4863
GlaI	GCGC	3 cut(s)	198, 2420, 3701
GsaI	CCCAGC	1 cut(s)	3406
GsuI	CTGGAG	3 cut(s)	499, 2616, 4622
HaeII	RGCGCY	2 cut(s)	2422, 3703
HapII	CCGG	9 cut(s)	146, 328, 690, 725, 818, 831, 989, 3553, 4777
HgaI	GACGC	1 cut(s)	1594
HhaI	GCGC	3 cut(s)	199, 2421, 3702
Hin1I	GRCGYC	1 cut(s)	3700
Hin6I	GCGC	3 cut(s)	197, 2419, 3700
HinP1I	GCGC	3 cut(s)	197, 2419, 3700
HincII	GTYRAC	3 cut(s)	463, 2187, 3173
HindII	GTYRAC	3 cut(s)	463, 2187, 3173
HindIII	AAGCTT	3 cut(s)	2339, 2438, 3745
HpaII	CCGG	9 cut(s)	146, 328, 690, 725, 818, 831, 989, 3553, 4777
Hpy166II	GTNNAC	8 cut(s)	72, 463, 753, 1495, 2187, 2920, 3173, 3788
Hpy8I	GTNNAC	8 cut(s)	72, 463, 753, 1495, 2187, 2920, 3173, 3788
Hpy99I	CGWCG	9 cut(s)	37, 61, 64, 67, 70, 85, 470, 476, 716
HpyCH4IV	ACGT	5 cut(s)	465, 2974, 3635, 4456, 4528
HpySE526I	ACGT	5 cut(s)	465, 2974, 3635, 4456, 4528
Hsp92I	GRCGYC	1 cut(s)	3700
HspAI	GCGC	3 cut(s)	197, 2419, 3700
KasI	GGCGCC	1 cut(s)	3699
KroI	GCCGGC	1 cut(s)	689
KroNI	GCCGGC	1 cut(s)	691
Ksp22I	TGATCA	5 cut(s)	612, 1603, 1696, 1897, 2173
KspI	CCGCGG	3 cut(s)	123, 407, 1137
LguI	GCTCTTC	1 cut(s)	4662
MaeII	ACGT	5 cut(s)	465, 2974, 3635, 4456, 4528
MbiI	CCGCTC	3 cut(s)	555, 1047, 4350
MfeI	CAATTG	1 cut(s)	4439
MflI	RGATCY	5 cut(s)	1291, 2194, 3320, 3859, 4869
MhlI	GDGCHC	9 cut(s)	289, 413, 818, 869, 2904, 3060, 3166, 4305, 4863
MlsI	TGGCCA	3 cut(s)	719, 2884, 3683
MluNI	TGGCCA	3 cut(s)	719, 2884, 3683
Mly113I	GGCGCC	1 cut(s)	3700
MmeI	TCCRAC	8 cut(s)	624, 1215, 2040, 2456, 3826, 4809, 4963, 5032
Mox20I	TGGCCA	3 cut(s)	719, 2884, 3683
Mph1103I	ATGCAT	1 cut(s)	3480
MroNI	GCCGGC	1 cut(s)	689
MroXI	GAANNNNTTC	4 cut(s)	2340, 3525, 3747, 4146
MscI	TGGCCA	3 cut(s)	719, 2884, 3683
MseI	TTAA	9 cut(s)	648, 783, 795, 1298, 1782, 3279, 3870, 4251, 4551
MslI	CAYNNNNRTG	5 cut(s)	3292, 4151, 4944, 5028, 5040
Msp20I	TGGCCA	3 cut(s)	719, 2884, 3683
MspA1I	CMGCKG	8 cut(s)	122, 136, 406, 501, 1136, 2659, 3793, 4904
MspCI	CTTAAG	1 cut(s)	4250
MspI	CCGG	9 cut(s)	146, 328, 690, 725, 818, 831, 989, 3553, 4777
MspR9I	CCNGG	8 cut(s)	369, 725, 818, 990, 2793, 2808, 4777, 5059
MunI	CAATTG	1 cut(s)	4439
Mva1269I	GAATGC	2 cut(s)	880, 3478
MvaI	CCWGG	4 cut(s)	369, 2793, 2808, 5059
MvnI	CGCG	4 cut(s)	122, 406, 658, 1136
NaeI	GCCGGC	1 cut(s)	691
NarI	GGCGCC	1 cut(s)	3700
NciI	CCSGG	4 cut(s)	725, 818, 990, 4777
NcoI	CCATGG	1 cut(s)	3684
NdeI	CATATG	4 cut(s)	1245, 1877, 2003, 2296
NgoMIV	GCCGGC	1 cut(s)	689
NmeAIII	GCCGAG	2 cut(s)	92, 215
NsiI	ATGCAT	1 cut(s)	3480
NspI	RCATGY	4 cut(s)	2776, 4156, 4784, 5039
NspV	TTCGAA	2 cut(s)	964, 1184
PaeI	GCATGC	2 cut(s)	4156, 4784
PaeR7I	CTCGAG	2 cut(s)	4287, 4578
PagI	TCATGA	2 cut(s)	2040, 4414
PceI	AGGCCT	2 cut(s)	2980, 4724
PciSI	GCTCTTC	1 cut(s)	4662
PcsI	WCGNNNNNNNCGW	3 cut(s)	65, 471, 540
PctI	GAATGC	2 cut(s)	880, 3478
PdiI	GCCGGC	1 cut(s)	691
PdmI	GAANNNNTTC	4 cut(s)	2340, 3525, 3747, 4146
PflFI	GACNNNGTC	1 cut(s)	4837
PflMI	CCANNNNNTGG	3 cut(s)	397, 1458, 1504
Ple19I	CGATCG	2 cut(s)	220, 4102
PluTI	GGCGCC	1 cut(s)	3703
Ppu21I	YACGTR	1 cut(s)	4529
PpuMI	RGGWCCY	2 cut(s)	163, 1654
PshAI	GACNNNNGTC	1 cut(s)	2124
Psp124BI	GAGCTC	2 cut(s)	2904, 4305
Psp1406I	AACGTT	1 cut(s)	3635
Psp5II	RGGWCCY	2 cut(s)	163, 1654
Psp6I	CCWGG	4 cut(s)	367, 2791, 2806, 5057
PspFI	CCCAGC	1 cut(s)	3402
PspGI	CCWGG	4 cut(s)	367, 2791, 2806, 5057
PspPPI	RGGWCCY	2 cut(s)	163, 1654
PstI	CTGCAG	5 cut(s)	681, 1207, 1651, 2842, 4722
PstNI	CAGNNNCTG	4 cut(s)	364, 2198, 2693, 4178
PsuI	RGATCY	5 cut(s)	1291, 2194, 3320, 3859, 4869
PsyI	GACNNNGTC	1 cut(s)	4837
PvuI	CGATCG	2 cut(s)	220, 4102
PvuII	CAGCTG	3 cut(s)	501, 3793, 4904
RsaI	GTAC	9 cut(s)	233, 302, 374, 1147, 2008, 2743, 3009, 3973, 4614
RsaNI	GTAC	9 cut(s)	232, 301, 373, 1146, 2007, 2742, 3008, 3972, 4613
RseI	CAYNNNNRTG	5 cut(s)	3292, 4151, 4944, 5028, 5040
SacI	GAGCTC	2 cut(s)	2904, 4305
SacII	CCGCGG	3 cut(s)	123, 407, 1137
SapI	GCTCTTC	1 cut(s)	4662
SaqAI	TTAA	9 cut(s)	648, 783, 795, 1298, 1782, 3279, 3870, 4251, 4551
ScaI	AGTACT	3 cut(s)	233, 302, 3973
ScrFI	CCNGG	8 cut(s)	369, 725, 818, 990, 2793, 2808, 4777, 5059
SduI	GDGCHC	9 cut(s)	289, 413, 818, 869, 2904, 3060, 3166, 4305, 4863
SfoI	GGCGCC	1 cut(s)	3701
Sfr274I	CTCGAG	2 cut(s)	4287, 4578
Sfr303I	CCGCGG	3 cut(s)	123, 407, 1137
SfuI	TTCGAA	2 cut(s)	964, 1184
SgrBI	CCGCGG	3 cut(s)	123, 407, 1137
SinI	GGWCC	7 cut(s)	52, 85, 163, 256, 400, 1654, 5054
SlaI	CTCGAG	2 cut(s)	4287, 4578
SmiMI	CAYNNNNRTG	5 cut(s)	3292, 4151, 4944, 5028, 5040
SmlI	CTYRAG	5 cut(s)	4250, 4287, 4337, 4578, 4748
SmoI	CTYRAG	5 cut(s)	4250, 4287, 4337, 4578, 4748
SpeI	ACTAGT	2 cut(s)	1592, 3968
SphI	GCATGC	2 cut(s)	4156, 4784
SseBI	AGGCCT	2 cut(s)	2980, 4724
SspDI	GGCGCC	1 cut(s)	3699
SspI	AATATT	1 cut(s)	2115
SstI	GAGCTC	2 cut(s)	2904, 4305
StuI	AGGCCT	2 cut(s)	2980, 4724
StyD4I	CCNGG	8 cut(s)	367, 723, 816, 988, 2791, 2806, 4775, 5057
StyI	CCWWGG	2 cut(s)	2129, 3684
TaiI	ACGT	5 cut(s)	468, 2977, 3638, 4459, 4531
TatI	WGTACW	5 cut(s)	231, 300, 2006, 3007, 3971
TauI	GCSGC	7 cut(s)	125, 136, 152, 155, 158, 192, 4964
Tru1I	TTAA	9 cut(s)	648, 783, 795, 1298, 1782, 3279, 3870, 4251, 4551
Tru9I	TTAA	9 cut(s)	648, 783, 795, 1298, 1782, 3279, 3870, 4251, 4551
TspGWI	ACGGA	9 cut(s)	98, 595, 634, 700, 1456, 2075, 2298, 2375, 4630
Tth111I	GACNNNGTC	1 cut(s)	4837
Van91I	CCANNNNNTGG	3 cut(s)	397, 1458, 1504
Vha464I	CTTAAG	1 cut(s)	4250
VpaK11BI	GGWCC	7 cut(s)	52, 85, 163, 256, 400, 1654, 5054
XagI	CCTNNNNNAGG	2 cut(s)	1625, 2586
XbaI	TCTAGA	2 cut(s)	3854, 4000
XceI	RCATGY	4 cut(s)	2776, 4156, 4784, 5039
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3610, 4979
XhoI	CTCGAG	2 cut(s)	4287, 4578
XmnI	GAANNNNTTC	4 cut(s)	2340, 3525, 3747, 4146
ZrmI	AGTACT	3 cut(s)	233, 302, 3973
Zsp2I	ATGCAT	1 cut(s)	3480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.