Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Reverse (-)

57846439 .. 57854873

Gene Structure 8435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG385600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4365 bp

ATGAAGCACCAGCAGAGCAGCTCATCGTCACCGTCGCAGTCGTCTGAGGCGGTCCCGTCTTCTTCGTCGTCGTCGTCGTCCACTGTGACGACGGACCAATCACATCCCACCACCTCGAACTCGGCATCCGCGGCGGAGAAGCCGCTGCCAATACCGGAGGCGGCGGCGGAGGACCTTGCGGTGGGGTCGAGGGACGGCGGCGGGGCGCAGGAGACGGTGACGGTCGATCGGAGAGGGGAGTACTCGGCCGTGTGCAGATGGACGGTCCAGAATTTTCCGAGAATCAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTGGGAGGGTACGATTGCCGGTTGTTAATATACCCTAAGGGTGACTCACAGGCTCTGCCTGGGTACATCTCCATCTACCTCCAAATCATGGACCCGCGGGGCACCTCCTCCTCCAAATGGGACTGCTTCGCCAGCTACCGCCTCGCCATCGTCAACGTCGCCGACGATTCCAAGACCATTCACAGGGACAGCTGGCACCGCTTCTCCAGCAAGAAGAAATCACACGGTTGGTGCGATTTCACCCGCTCCTCTACTGTTTTTGATTCCAAGTTAGGTTATCTTTTCAATTCCGACTCCGTTTTGATCACCGCCGATATTTTGATATTGAATGAGTCCGTTAATTTCACGCGAGATAATAATAACGAGCTGCAGTCATCTGCCGGCTCCATGATGTCATCTTCCGTCGTGGCCAGCCCGGTCTCCGATGTGTTGAGTGGCAAGTTCACTTGGAAGGTGCATAACTTTAGCTTGTTTAAGGATATGATTAAGACTCAGAAGATAATGAGCCCGGTGTTCCCCGCCGGAGAGTGTAATTTGAGGATTAGTGTTTATCAGAGCACTGTGAATGCTGTAGAGTATCTATCAATGTGTTTGGAGAGCAAGGATACTGACAAGACGGTTGTGTTGTCCGATAGAAGTTGTTGGTGTTTGTTTCGAATGTCTGTGTTGAACCAGAAGCCGGGGACCAATCACATTCACAGGGACTCGTATGGGAGGTTTGCTGCCGATAATAAGAGCGGGGATAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTCAGATTTCGTTGGGCCAGAGTCGGGGTTTTTGGCTGATGATACCGCGGTGTTTAGTACCTCATTTCATGTGATAAAGGAGTTTAGTAGCTTTTCGAAGAATGGGGGATTGGCTGCAGGGAGGAGTGGTAGTGGGGCGAGGAAGTTGGATGGACATATGGGGAAATTTACTTGGAGGATTGAAAATTTCACAAAGTTGAAGGATCTATTAAAGAAGAGGAAGATAACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGGGACTGTCGGCTCATTGTTTATCCCCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACAGATTCACGGAACACTGCCAGTGATTGGAGTTGTTTTGTGAGTCATCGCTTGTCTGTTGTGAACCAGAAGATGGAAGAGAAGTCTGTCACAAAGGAGTCTCAGAACCGCTACTCCAAAGCTGCAAAGGACTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTCTTTGATCAAGATTCAGGGTTCCTTGTTCAGGACACTGTTGTATTCTCTGCAGAGGTCCTTATATTGAAAGAGACATCAATTATGCAGGATTTGATTGATCAGGATACCGAGTCCGCTACCCAGATTGACAAGAATGTAAAACGAAGCTCTTTTACATGGAAGGTGGAGAACTTCCTGTCTTTTAAGGAAATAATGGAGACCCGAAAAATCTTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGGGTATATGAGTCCTTTGACACCATATGTATTTATTTGGAGAGTGATCAGTCAGTTGGCAGTGATCTGGACAAAAATTTCTGGGTGCGATATAGGATGGCTGTTGTGAATCAAAAGAACCCTGCCAAAACTGTGTGGAGGGAGTCTTCCATATGTACAAAGACTTGGAACAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCAGATGCAGGGTTTCTTGTCCGTGATACCGTTGTTTTTGTATGTGAAATATTGGACTGCTGTCCTTGGTTTGAGTTTTCAGACCTAGAGGTTTTTGCTTCCGAGGATGATCAGGATGCGTTGACAACAGATCCTGATGAACTTGTTGATTCTGAAGATAGTGAAGGAATAGGTGGTGACGAAGAAGATATCTTTAGAAACCTGCTTTCCAGAGCTGGATTTCACCTCACATATGGAGATAATCCGTCACAGCCACAGGTCACTTTACGAGAAAAGCTTCTGATGGATGCGGGTGCCATTGCTGGTTTCCTGACTGGACTCCGTGTTTATCTTGATGACCCTGCTAAAGTAAAGCGCCTGCTTCTTCCAACCAAGCTTTCTGGTAGCGGTGATGGAATGAAGGTCTTGAAGAATGATGAATCTTCTCCTAGTTTGATGAATTTACTAATGGGAGTCAAAGTGTTGCAGCAGGCTATTATTGATTTACTTTTAGACATTATGGTTGAGTGTTGCCAACCTACAGAAGGGAGTTGTAATGGTGATTTATCTGATGGAAACTCAAAAACTCCAGATGGAAGTGGAGCTGCCAGTCTGCTGCAATCTGATAGAGAAAATGGAGCAACAGAATCTGTGCATTGTCCCGTGTATGAGCGATTGGATGCCAGTGTTGATGAAAGTACCAGTGCTTCGGCTGTTCAAAGTTCTGACATGCACGGGGTTGGTATCCCAGGAAAAACTCTTCCTGGGCAGCCAATTTGCCCCCCAGAAACATCTGCAGGGGCATCAGAAAATGTGTCCCTTCGTTCAAAGACTAAGTGGCCAGAGCAATCTGAGGAGCTCTTAGGATTGATTGTAAACTCACTGAGAGCTTTGGATGGAGCTGTTCCACAAGGCTGTCCTGAACCAAGACGTAGGCCTCAGTCTGCACAAAAGATCGCTCTTGTACTGGATAAAGCTCCTAAGCATTTGCAGCCTGATCTGGTGTCTTTGGTGCCCAAGTTGGTTGAACATTCAGAGCATCCACTTGCTGCCTTTGCACTTATTGAACGATTGCAAAAGCCAGATGCAGAACTTGCATTGCGGACACCTGTTTTCGGTGCTCTGAGTCAACTGGACTGTGGCAGTGAAGTGTGGGAACGGGTTTTATCTCAATCTTTAGAGTTTTTGTCAGATTCAAACGATGAACCTCTTGCTGCAACCATAGATTTCATATTTAAAGCTGCATCCCAGTGCCAACACCTACCTGAAGCAGTCAGATCTGTTCGTGTCAGGCTAAAGAATTTGGGTGTTGATGTTTCTCCTTGTGTCCTTGAATTATTGAGTAGAACTGTAAATAGCTGGGGAGATGTTGCTGAAACCATACTTAGAGATATTGATTGTGATGATGATTTTGGTGATAGTTGCTCGACTATGCATTCTGGGCTTTTCTTGTTTGGAGAACATGGGCCTTGTTCGGAACGGTTTCATTTGGTGGATGAGCAGGCTTTCCGGCCTTGTCACCATTTTTCTGATATTTACATCTTGATTGAGATGTTATCCATACCTTGTCTGGCTGTAGAAGCCTCTCAAACGTTTGAGAGAGCTGTAGCTCGTGGTGCTATTGTGGCTCATTCTGTGGCCATGGTTTTGGAAAGGCGCCTTGCTCAAAGATTGAACCTTGATGCCAGATTTGTTGCGGAAAGCTTTCAGCAGACAGATTTGGTAGTAGAGGGAGAAGCCAGTGAACAGCTGAGAGTCCAACAAGACGATTTTACTTCAGTTCTTGGTCTTGCTGAAACATTGGCCCTCTCTAGAGATCCTTGTGTTAAGGGATTTGTGAAGGTGCTCTACACATTATTGTTCAAATGGTATGCTGACGAATCTTATCGAGGGAGAATTCTAAAGAGACTTGTTGATCGTGCCACTAGTACTACAGATAGTAGTCGTGAAATTGATCTAGATTTTGATATATTGGTGACACTAGCTTCTGAGGAGCAGGAAATTGTTAGACCAGTTTTGAGTATGATGCGGGAGGTTGCTGAACTTGCAAATGTCGATCGGGCTGCTCTTTGGCACCAGTTATGTGCTAGTGAAGATGAAATCATTCGCATGCGGGAAGAGAGGAAAGCAGAAACTGCTAACATGGCTAGAGAAAAAGCTGTTATATTGCAAAAACTGAGTGAATCCGAGGCCACTAACAATCGTCTTAAGGTACTTGTTGTCTTAACTGGTGATATGGCTAGGATTATCGCATCTTATTTATTCTTTTCGGAGAATATTAGAATTGATGCATGTCATGATGTGGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

1454

Amino Acids

161.51

Weight (kDa)

5.21

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	86 - 212	4.5e-20	MATH domain
MATH	PF00917	90 - 214	3e-08	MATH domain
MATH_2	PF22486	253 - 385	1.3e-19	MATH domain
MATH_2	PF22486	421 - 555	3.3e-30	MATH domain
MATH	PF00917	451 - 557	8.1e-10	MATH domain
MATH_2	PF22486	586 - 708	3.8e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2283
AccB1I	GGYRCC	6 cut(s)	419, 513, 2366, 3064, 3708, 4125
AccB7I	CCANNNNNTGG	3 cut(s)	406, 1467, 1513
AccBSI	CCGCTC	2 cut(s)	564, 1056
AccII	CGCG	4 cut(s)	131, 415, 667, 1145
AclI	AACGTT	1 cut(s)	3644
AclWI	GGATC	3 cut(s)	1308, 2198, 3863
AcoI	YGGCCR	4 cut(s)	246, 726, 2891, 3690
AcsI	RAATTY	9 cut(s)	271, 1262, 1282, 1586, 1826, 1936, 2512, 3352, 3948
AcuI	CTGAAG	3 cut(s)	2247, 3339, 3813
AcyI	GRCGYC	1 cut(s)	3709
AflII	CTTAAG	1 cut(s)	4259
AhlI	ACTAGT	2 cut(s)	1601, 3977
AjnI	CCWGG	3 cut(s)	376, 2800, 2815
AjuI	GAANNNNNNNTTGG	4 cut(s)	1190, 1222, 2434, 2466
AloI	GAACNNNNNNTCC	4 cut(s)	110, 142, 1538, 1570
Alw21I	GWGCWC	4 cut(s)	878, 2913, 3175, 3900
Alw26I	GTCTC	8 cut(s)	206, 742, 1407, 1545, 1610, 1673, 1799, 3952
AlwI	GGATC	3 cut(s)	1308, 2198, 3863
AlwNI	CAGNNNCTG	4 cut(s)	373, 2207, 2702, 4187
Ama87I	CYCGRG	1 cut(s)	1392
ApoI	RAATTY	9 cut(s)	271, 1262, 1282, 1586, 1826, 1936, 2512, 3352, 3948
Asp700I	GAANNNNTTC	4 cut(s)	2349, 3534, 3756, 4155
AspLEI	GCGC	3 cut(s)	208, 2430, 3711
AsuC2I	CCSGG	3 cut(s)	734, 827, 999
AsuII	TTCGAA	2 cut(s)	973, 1193
AvaI	CYCGRG	1 cut(s)	1392
AvaII	GGWCC	7 cut(s)	52, 94, 172, 265, 409, 1002, 1663
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	3 cut(s)	298, 422, 3069
BaeI	ACNNNNGTAYC	4 cut(s)	1131, 1164, 2091, 2124
BalI	TGGCCA	3 cut(s)	728, 2893, 3692
BanI	GGYRCC	6 cut(s)	419, 513, 2366, 3064, 3708, 4125
BanII	GRGCYC	2 cut(s)	827, 2913
BarI	GAAGNNNNNNTAC	6 cut(s)	1744, 1776, 2743, 2775, 3884, 3916
BauI	CACGAG	1 cut(s)	3663
BbsI	GAAGAC	2 cut(s)	51, 1998
Bbv12I	GWGCWC	4 cut(s)	878, 2913, 3175, 3900
BceAI	ACGGC	2 cut(s)	211, 233
BcgI	CGANNNNNNTGC	4 cut(s)	295, 329, 4097, 4131
BciT130I	CCWGG	3 cut(s)	378, 2802, 2817
BciVI	GTATCC	3 cut(s)	916, 1705, 2807
BclI	TGATCA	5 cut(s)	621, 1612, 1705, 1906, 2182
BcnI	CCSGG	3 cut(s)	734, 827, 999
BcoDI	GTCTC	8 cut(s)	206, 742, 1407, 1545, 1610, 1673, 1799, 3952
BcuI	ACTAGT	2 cut(s)	1601, 3977
BfmI	CTRYAG	9 cut(s)	686, 888, 1212, 1656, 2592, 2847, 3627, 3657, 3984
BfoI	RGCGCY	2 cut(s)	2431, 3712
BfrI	CTTAAG	1 cut(s)	4259
BfuAI	ACCTGC	1 cut(s)	2283
BfuI	GTATCC	3 cut(s)	916, 1705, 2807
BglII	AGATCT	1 cut(s)	3329
BmcAI	AGTACT	3 cut(s)	242, 311, 3982
Bme1390I	CCNGG	6 cut(s)	378, 734, 827, 999, 2802, 2817
Bme18I	GGWCC	7 cut(s)	52, 94, 172, 265, 409, 1002, 1663
BmeT110I	CYCGRG	1 cut(s)	1392
BmrFI	CCNGG	6 cut(s)	378, 734, 827, 999, 2802, 2817
BmrI	ACTGGG	2 cut(s)	1582, 3295
BmuI	ACTGGG	2 cut(s)	1582, 3295
BoxI	GACNNNNGTC	1 cut(s)	2133
BpiI	GAAGAC	2 cut(s)	51, 1998
BpmI	CTGGAG	2 cut(s)	508, 2625
Bpu10I	CCTNAGC	1 cut(s)	3033
Bpu14I	TTCGAA	2 cut(s)	973, 1193
BpuMI	CCSGG	3 cut(s)	734, 827, 999
BsaHI	GRCGYC	1 cut(s)	3709
BsaI	GGTCTC	2 cut(s)	742, 1799
BsaWI	WCCGGW	1 cut(s)	154
Bse118I	RCCGGY	2 cut(s)	336, 698
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	2370, 3149
BseBI	CCWGG	3 cut(s)	378, 2802, 2817
BseMI	GCAATG	2 cut(s)	2370, 3149
BseRI	GAGGAG	6 cut(s)	415, 418, 556, 1234, 2921, 4058
BseSI	GKGCMC	3 cut(s)	298, 422, 3069
BseX3I	CGGCCG	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	3411
BsgI	GTGCAG	2 cut(s)	274, 2982
Bsh1236I	CGCG	4 cut(s)	131, 415, 667, 1145
Bsh1285I	CGRYCG	4 cut(s)	225, 229, 249, 4111
BshNI	GGYRCC	6 cut(s)	419, 513, 2366, 3064, 3708, 4125
BsiEI	CGRYCG	4 cut(s)	225, 229, 249, 4111
BsiHKAI	GWGCWC	4 cut(s)	878, 2913, 3175, 3900
BsiHKCI	CYCGRG	1 cut(s)	1392
BsiSI	CCGG	8 cut(s)	155, 337, 699, 734, 827, 840, 998, 3562
BslFI	GGGAC	9 cut(s)	38, 206, 452, 518, 1015, 1034, 1382, 2697, 2854
BsmAI	GTCTC	8 cut(s)	206, 742, 1407, 1545, 1610, 1673, 1799, 3952
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	9 cut(s)	38, 206, 452, 518, 1015, 1034, 1382, 2697, 2854
BsmI	GAATGC	2 cut(s)	889, 3487
Bso31I	GGTCTC	2 cut(s)	742, 1799
BsoBI	CYCGRG	1 cut(s)	1392
Bsp119I	TTCGAA	2 cut(s)	973, 1193
Bsp1286I	GDGCHC	8 cut(s)	298, 422, 827, 878, 2913, 3069, 3175, 3900
Bsp1407I	TGTACA	1 cut(s)	2015
Bsp19I	CCATGG	1 cut(s)	3693
BspFNI	CGCG	4 cut(s)	131, 415, 667, 1145
BspHI	TCATGA	2 cut(s)	2049, 4348
BspMAI	CTGCAG	4 cut(s)	690, 1216, 1660, 2851
BspMI	ACCTGC	1 cut(s)	2283
BspPI	GGATC	3 cut(s)	1308, 2198, 3863
BspT104I	TTCGAA	2 cut(s)	973, 1193
BspT107I	GGYRCC	6 cut(s)	419, 513, 2366, 3064, 3708, 4125
BspTI	CTTAAG	1 cut(s)	4259
BspTNI	GGTCTC	2 cut(s)	742, 1799
BsrBI	CCGCTC	2 cut(s)	564, 1056
BsrDI	GCAATG	2 cut(s)	2370, 3149
BsrFI	RCCGGY	2 cut(s)	336, 698
BsrGI	TGTACA	1 cut(s)	2015
BssAI	RCCGGY	2 cut(s)	336, 698
BssNI	GRCGYC	1 cut(s)	3709
BssSI	CACGAG	1 cut(s)	3663
BssT1I	CCWWGG	2 cut(s)	2138, 3693
Bst2BI	CACGAG	1 cut(s)	3663
Bst2UI	CCWGG	3 cut(s)	378, 2802, 2817
Bst6I	CTCTTC	4 cut(s)	1307, 1512, 2817, 4164
BstACI	GRCGYC	1 cut(s)	3709
BstAFI	CTTAAG	1 cut(s)	4259
BstAPI	GCANNNNNTGC	2 cut(s)	3146, 4187
BstAUI	TGTACA	1 cut(s)	2015
BstBI	TTCGAA	2 cut(s)	973, 1193
BstC8I	GCNNGC	8 cut(s)	451, 512, 700, 730, 2432, 2544, 3555, 4163
BstDSI	CCRYGG	4 cut(s)	129, 413, 1143, 3693
BstENI	CCTNNNNNAGG	2 cut(s)	1634, 2595
BstFNI	CGCG	4 cut(s)	131, 415, 667, 1145
BstH2I	RGCGCY	2 cut(s)	2431, 3712
BstHHI	GCGC	3 cut(s)	208, 2430, 3711
BstMAI	GTCTC	8 cut(s)	206, 742, 1407, 1545, 1610, 1673, 1799, 3952
BstMCI	CGRYCG	4 cut(s)	225, 229, 249, 4111
BstNI	CCWGG	3 cut(s)	378, 2802, 2817
BstNSI	RCATGY	3 cut(s)	2785, 4165, 4347
BstPAI	GACNNNNGTC	1 cut(s)	2133
BstSCI	CCNGG	6 cut(s)	376, 732, 825, 997, 2800, 2815
BstSFI	CTRYAG	9 cut(s)	686, 888, 1212, 1656, 2592, 2847, 3627, 3657, 3984
BstSLI	GKGCMC	3 cut(s)	298, 422, 3069
BstUI	CGCG	4 cut(s)	131, 415, 667, 1145
BstV2I	GAAGAC	2 cut(s)	51, 1998
BstX2I	RGATCY	4 cut(s)	1300, 2203, 3329, 3868
BstXI	CCANNNNNNTGG	1 cut(s)	3700
BstYI	RGATCY	4 cut(s)	1300, 2203, 3329, 3868
BstZI	CGGCCG	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	3 cut(s)	916, 1705, 2807
BtgI	CCRYGG	4 cut(s)	129, 413, 1143, 3693
BtgZI	GCGATG	1 cut(s)	1472
BtsI	GCAGTG	3 cut(s)	1455, 1927, 3202
BveI	ACCTGC	1 cut(s)	2283
Cac8I	GCNNGC	8 cut(s)	451, 512, 700, 730, 2432, 2544, 3555, 4163
CaiI	CAGNNNCTG	4 cut(s)	373, 2207, 2702, 4187
CciI	TCATGA	2 cut(s)	2049, 4348
CfoI	GCGC	3 cut(s)	208, 2430, 3711
Cfr10I	RCCGGY	2 cut(s)	336, 698
Cfr42I	CCGCGG	3 cut(s)	132, 416, 1146
CseI	GACGC	1 cut(s)	1603
DinI	GGCGCC	1 cut(s)	3710
DraI	TTTAAA	1 cut(s)	3289
EaeI	YGGCCR	4 cut(s)	246, 726, 2891, 3690
EagI	CGGCCG	1 cut(s)	246
Eam1104I	CTCTTC	4 cut(s)	1307, 1512, 2817, 4164
EarI	CTCTTC	4 cut(s)	1307, 1512, 2817, 4164
EciI	GGCGGA	2 cut(s)	149, 182
Ecl136II	GAGCTC	1 cut(s)	2911
EclXI	CGGCCG	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	2138, 3693
Eco147I	AGGCCT	1 cut(s)	2989
Eco24I	GRGCYC	2 cut(s)	827, 2913
Eco31I	GGTCTC	2 cut(s)	742, 1799
Eco32I	GATATC	1 cut(s)	2263
Eco47I	GGWCC	7 cut(s)	52, 94, 172, 265, 409, 1002, 1663
Eco52I	CGGCCG	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	2911
Eco57I	CTGAAG	3 cut(s)	2247, 3339, 3813
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	1392
EcoICRI	GAGCTC	1 cut(s)	2911
EcoNI	CCTNNNNNAGG	2 cut(s)	1634, 2595
EcoO109I	RGGNCCY	2 cut(s)	172, 1663
EcoRI	GAATTC	1 cut(s)	3948
EcoRII	CCWGG	3 cut(s)	376, 2800, 2815
EcoRV	GATATC	1 cut(s)	2263
EcoT14I	CCWWGG	2 cut(s)	2138, 3693
EcoT22I	ATGCAT	2 cut(s)	3489, 4345
EcoT38I	GRGCYC	2 cut(s)	827, 2913
EgeI	GGCGCC	1 cut(s)	3710
EheI	GGCGCC	1 cut(s)	3710
ErhI	CCWWGG	2 cut(s)	2138, 3693
Esp3I	CGTCTC	1 cut(s)	206
FaqI	GGGAC	9 cut(s)	38, 206, 452, 518, 1015, 1034, 1382, 2697, 2854
FauI	CCCGC	9 cut(s)	194, 408, 420, 569, 844, 1049, 2356, 4074, 4158
FauNDI	CATATG	4 cut(s)	1254, 1886, 2012, 2305
FbaI	TGATCA	5 cut(s)	621, 1612, 1705, 1906, 2182
FriOI	GRGCYC	2 cut(s)	827, 2913
GlaI	GCGC	3 cut(s)	207, 2429, 3710
GsaI	CCCAGC	1 cut(s)	3415
GsuI	CTGGAG	2 cut(s)	508, 2625
HaeII	RGCGCY	2 cut(s)	2431, 3712
HapII	CCGG	8 cut(s)	155, 337, 699, 734, 827, 840, 998, 3562
HgaI	GACGC	1 cut(s)	1603
HhaI	GCGC	3 cut(s)	208, 2430, 3711
Hin1I	GRCGYC	1 cut(s)	3709
Hin6I	GCGC	3 cut(s)	206, 2428, 3709
HinP1I	GCGC	3 cut(s)	206, 2428, 3709
HincII	GTYRAC	3 cut(s)	472, 2196, 3182
HindII	GTYRAC	3 cut(s)	472, 2196, 3182
HindIII	AAGCTT	3 cut(s)	2348, 2447, 3754
HpaII	CCGG	8 cut(s)	155, 337, 699, 734, 827, 840, 998, 3562
Hpy166II	GTNNAC	8 cut(s)	81, 472, 762, 1504, 2196, 2929, 3182, 3797
Hpy8I	GTNNAC	8 cut(s)	81, 472, 762, 1504, 2196, 2929, 3182, 3797
Hpy99I	CGWCG	9 cut(s)	37, 70, 73, 76, 79, 94, 479, 485, 725
HpyAV	CCTTC	9 cut(s)	763, 1291, 1762, 2047, 2231, 2467, 2591, 2882, 3886
HpyCH4IV	ACGT	3 cut(s)	474, 2983, 3644
HpySE526I	ACGT	3 cut(s)	474, 2983, 3644
Hsp92I	GRCGYC	1 cut(s)	3709
HspAI	GCGC	3 cut(s)	206, 2428, 3709
KasI	GGCGCC	1 cut(s)	3708
KroI	GCCGGC	1 cut(s)	698
KroNI	GCCGGC	1 cut(s)	700
Ksp22I	TGATCA	5 cut(s)	621, 1612, 1705, 1906, 2182
KspI	CCGCGG	3 cut(s)	132, 416, 1146
LmnI	GCTCC	9 cut(s)	303, 569, 707, 2654, 2690, 2908, 2951, 3034, 4045
MaeII	ACGT	3 cut(s)	474, 2983, 3644
MbiI	CCGCTC	2 cut(s)	564, 1056
MflI	RGATCY	4 cut(s)	1300, 2203, 3329, 3868
MhlI	GDGCHC	8 cut(s)	298, 422, 827, 878, 2913, 3069, 3175, 3900
MlsI	TGGCCA	3 cut(s)	728, 2893, 3692
MluNI	TGGCCA	3 cut(s)	728, 2893, 3692
Mly113I	GGCGCC	1 cut(s)	3709
MmeI	TCCRAC	5 cut(s)	633, 1224, 2049, 2465, 3835
Mox20I	TGGCCA	3 cut(s)	728, 2893, 3692
Mph1103I	ATGCAT	2 cut(s)	3489, 4345
MroNI	GCCGGC	1 cut(s)	698
MroXI	GAANNNNTTC	4 cut(s)	2349, 3534, 3756, 4155
MscI	TGGCCA	3 cut(s)	728, 2893, 3692
MslI	CAYNNNNRTG	2 cut(s)	3301, 4160
Msp20I	TGGCCA	3 cut(s)	728, 2893, 3692
MspA1I	CMGCKG	6 cut(s)	131, 145, 415, 510, 1145, 3802
MspCI	CTTAAG	1 cut(s)	4259
MspI	CCGG	8 cut(s)	155, 337, 699, 734, 827, 840, 998, 3562
MspR9I	CCNGG	6 cut(s)	378, 734, 827, 999, 2802, 2817
Mva1269I	GAATGC	2 cut(s)	889, 3487
MvaI	CCWGG	3 cut(s)	378, 2802, 2817
MvnI	CGCG	4 cut(s)	131, 415, 667, 1145
NaeI	GCCGGC	1 cut(s)	700
NarI	GGCGCC	1 cut(s)	3709
NciI	CCSGG	3 cut(s)	734, 827, 999
NcoI	CCATGG	1 cut(s)	3693
NdeI	CATATG	4 cut(s)	1254, 1886, 2012, 2305
NgoMIV	GCCGGC	1 cut(s)	698
NmeAIII	GCCGAG	2 cut(s)	101, 224
NsiI	ATGCAT	2 cut(s)	3489, 4345
NspI	RCATGY	3 cut(s)	2785, 4165, 4347
NspV	TTCGAA	2 cut(s)	973, 1193
PaeI	GCATGC	1 cut(s)	4165
PagI	TCATGA	2 cut(s)	2049, 4348
PceI	AGGCCT	1 cut(s)	2989
PcsI	WCGNNNNNNNCGW	4 cut(s)	71, 74, 480, 549
PctI	GAATGC	2 cut(s)	889, 3487
PdiI	GCCGGC	1 cut(s)	700
PdmI	GAANNNNTTC	4 cut(s)	2349, 3534, 3756, 4155
PflMI	CCANNNNNTGG	3 cut(s)	406, 1467, 1513
Ple19I	CGATCG	2 cut(s)	229, 4111
PluTI	GGCGCC	1 cut(s)	3712
PpuMI	RGGWCCY	2 cut(s)	172, 1663
PshAI	GACNNNNGTC	1 cut(s)	2133
Psp124BI	GAGCTC	1 cut(s)	2913
Psp1406I	AACGTT	1 cut(s)	3644
Psp5II	RGGWCCY	2 cut(s)	172, 1663
Psp6I	CCWGG	3 cut(s)	376, 2800, 2815
PspFI	CCCAGC	1 cut(s)	3411
PspGI	CCWGG	3 cut(s)	376, 2800, 2815
PspPPI	RGGWCCY	2 cut(s)	172, 1663
PstI	CTGCAG	4 cut(s)	690, 1216, 1660, 2851
PstNI	CAGNNNCTG	4 cut(s)	373, 2207, 2702, 4187
PsuI	RGATCY	4 cut(s)	1300, 2203, 3329, 3868
PvuI	CGATCG	2 cut(s)	229, 4111
PvuII	CAGCTG	2 cut(s)	510, 3802
RseI	CAYNNNNRTG	2 cut(s)	3301, 4160
SacI	GAGCTC	1 cut(s)	2913
SacII	CCGCGG	3 cut(s)	132, 416, 1146
ScaI	AGTACT	3 cut(s)	242, 311, 3982
ScrFI	CCNGG	6 cut(s)	378, 734, 827, 999, 2802, 2817
SduI	GDGCHC	8 cut(s)	298, 422, 827, 878, 2913, 3069, 3175, 3900
SfcI	CTRYAG	9 cut(s)	686, 888, 1212, 1656, 2592, 2847, 3627, 3657, 3984
SfoI	GGCGCC	1 cut(s)	3710
Sfr303I	CCGCGG	3 cut(s)	132, 416, 1146
SfuI	TTCGAA	2 cut(s)	973, 1193
SgrBI	CCGCGG	3 cut(s)	132, 416, 1146
SinI	GGWCC	7 cut(s)	52, 94, 172, 265, 409, 1002, 1663
SmiMI	CAYNNNNRTG	2 cut(s)	3301, 4160
SmlI	CTYRAG	1 cut(s)	4259
SmoI	CTYRAG	1 cut(s)	4259
SpeI	ACTAGT	2 cut(s)	1601, 3977
SphI	GCATGC	1 cut(s)	4165
SseBI	AGGCCT	1 cut(s)	2989
SspDI	GGCGCC	1 cut(s)	3708
SspI	AATATT	2 cut(s)	2124, 4330
SstI	GAGCTC	1 cut(s)	2913
StuI	AGGCCT	1 cut(s)	2989
StyD4I	CCNGG	6 cut(s)	376, 732, 825, 997, 2800, 2815
StyI	CCWWGG	2 cut(s)	2138, 3693
TaiI	ACGT	3 cut(s)	477, 2986, 3647
TaqI	TCGA	9 cut(s)	116, 188, 225, 315, 973, 1193, 3479, 3940, 4107
TatI	WGTACW	5 cut(s)	240, 309, 2015, 3016, 3980
TauI	GCSGC	5 cut(s)	134, 145, 164, 167, 201
TspGWI	ACGGA	8 cut(s)	107, 604, 643, 709, 1465, 2084, 2307, 2384
Van91I	CCANNNNNTGG	3 cut(s)	406, 1467, 1513
Vha464I	CTTAAG	1 cut(s)	4259
VpaK11BI	GGWCC	7 cut(s)	52, 94, 172, 265, 409, 1002, 1663
XagI	CCTNNNNNAGG	2 cut(s)	1634, 2595
XapI	RAATTY	9 cut(s)	271, 1262, 1282, 1586, 1826, 1936, 2512, 3352, 3948
XbaI	TCTAGA	2 cut(s)	3863, 4009
XceI	RCATGY	3 cut(s)	2785, 4165, 4347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3619
XmnI	GAANNNNTTC	4 cut(s)	2349, 3534, 3756, 4155
ZrmI	AGTACT	3 cut(s)	242, 311, 3982
Zsp2I	ATGCAT	2 cut(s)	3489, 4345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.