Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Reverse (-)

42125983 .. 42127824

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0274300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGGGGTTACTTCCATGGCCAAACCGCCTCAAACCTCTCCTTTTATCCTGCAAACACAAACCCTCCTTAGCTAAAATCCATGCCCTTATGATAGTGACTGGTGCTATCACCCATGCAAACTTCCTCGCCCCACTTATAGCCTCATATGCAAGCATTGGCGACACCGAAACTGCCCGCCAGGTGTTCGACGAAATGCCTCAAAGAAACATACATGCATGGAATGCCATGATAATTGCATATTCTCGTCAGCATTTCCCATCTGAAGCTTTGAGTTTGTATTCTCGGATGATATCGGAGGGAGTTCGACCCGATAGCTCGACCTTTACTGGTGCTCTCAAGGCATGTGCAGGCATGTTGGACTTGAAAATGGGTGAGGAAGTTTGGTCCAAGGCGGCGCGTTGCGGGTACGAGGGCGACGTGTTTGTGGCGTCTTCTGTTTTGAATTTGTATGCAAAGTGTGGGAAAATGGATGAAGCAGTGGCGGTTTTCGACAAGATGCACAGAAGGGATCTTGTTTGTTGTACGACAATGATTACGGGGTTTTTGCAGAGTGGGAGGCCAGTGGAAGCAGTTGAGGTGTATAGGAGGATGCAAAATGAGGGAATGGAGTTTGATGGGGTTGTGATGATGGGGTTAGTGCAGGCTTGTGCAAGTCTAGGGGACTTGAGGTTGGGTCTTTCGGTTCATGGGTATATGATTAGGAGAGGTATTCCAATGGATGTTATGGTTCAGACAAGTCTTGTGGATATGTATGCTAAGAGTGGACATTTCGAGCTAGCTTCTTGTGTATTCAATAGGATGCGTTACAGGAATGCCGTTTCTTGGGGTGCTTTGATTTCTGGCTTTGCTCAAAATGGTTTTGCAGGGCACGCGCTTGAAATGGTGGTAGAGATGCAGAAATGTGGTTTCGAGCCAGATTCAGCATCTCTTGTGAGCTCACTTCTAGCATGTTCACAGGTCGGACTGTTGAAATTGGGTAAATCCATTCATGGATATATTTTGAAAAGGCTCGAGATTGGTCAAGTGTGCGGTACTGCAGTCATTGACATGTATTCCAAATGTGGTTCCCTTTCGTATGCGCATGCTCTCTTTGATCAGATGGTCTCCAGAGACTTGATCTCATGGAATGCTATGATTGCCAGCTATGGGATTCATGGGTGTGGAGAGGAAGCTCTAGCACTCTTCCTCCAGATGACAAAGACGAACTTAAAGCCTGATCATTCTACTTTTGCTTCTCTTCTATCGGCTTTCAGTCACTCTGGTCTCGTAGAAGAAGGCCTGCATTGGTTCAATGTCATGGTCGCTAAGTACAAGATCCCTCCAGGGGAGAAACATTATGCTTGTATGGTTGATTTGCTGGCTCGTTCTGGACGAGTAGAAGAGGCTAGCGAGCTAATAGCTTCTATGAACACCGAACCTGGGCTTGCTGTCTGGGTTGCCCTCCTGGCAGGTTGCCACAACCATCGGAAACTCTCCATTGGAGAAATTGCAGCAAAGAAGGTCCTCGAGTTAAATCCAGATGACTTGGGAGTTTATGCTTTGGTCTCAAATTTTTACGCCATGGCAAGGAGATGGGAATGTGTAGCTGGTACAAAGAAGATCATGAAACAGACGGGAACGAAGAAAGTCCCAGGCTACAGTGTAGTGGAAGTGAATGGAAAGCTCCATGCTTTTCTTATGGAAGATAAGAGCCATCATCACCATGAAGATATTATGCTACTACTGAATAAGTTGTACCATGACATGAGAGCTATCGGATATGTCCCAAAGTCTGAGGCTCTGTTGCATAATTTTGAAGAGGCACATTCCTCAGAGCAAAGAAAATTTATCAAATTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

613

Amino Acids

67.75

Weight (kDa)

8.07

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	69 - 116	2.5e-09	PPR repeat family
PPR	PF01535	72 - 101	4.5e-06	PPR repeat
PPR_2	PF13041	170 - 216	6.9e-06	PPR repeat family
PPR	PF01535	172 - 201	5.4e-06	PPR repeat
PPR_2	PF13041	371 - 418	1.2e-09	PPR repeat family
PPR	PF01535	373 - 400	6.8e-06	PPR repeat
E_motif	PF20431	488 - 550	2e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1080
Acc36I	ACCTGC	1 cut(s)	1439
AccII	CGCG	2 cut(s)	397, 872
AciI	CCGC	6 cut(s)	25, 175, 392, 402, 482, 1029
AclWI	GGATC	2 cut(s)	516, 1309
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	3 cut(s)	442, 1549, 1823
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	6 cut(s)	407, 523, 1033, 1310, 1591, 1736
AfiI	CCNNNNNNNGG	5 cut(s)	822, 1146, 1324, 1419, 1566
AflIII	ACRYGT	2 cut(s)	417, 1047
AgsI	TTSAA	8 cut(s)	364, 442, 793, 878, 970, 1003, 1291, 1796
AjiI	CACGTC	1 cut(s)	418
AjnI	CCWGG	5 cut(s)	177, 1321, 1417, 1443, 1630
Alw21I	GWGCWC	2 cut(s)	334, 938
Alw26I	GTCTC	4 cut(s)	1104, 1108, 1268, 1549
AlwI	GGATC	2 cut(s)	516, 1309
Ama87I	CYCGRG	2 cut(s)	1010, 1505
AoxI	GGCC	3 cut(s)	17, 557, 1276
ApeKI	GCWGC	1 cut(s)	1490
ApoI	RAATTY	3 cut(s)	442, 1549, 1823
AspLEI	GCGC	3 cut(s)	397, 874, 1081
AspS9I	GGNCC	2 cut(s)	384, 1501
AsuHPI	GGTGA	3 cut(s)	100, 383, 1691
AsuNHI	GCTAGC	2 cut(s)	775, 1385
AvaI	CYCGRG	2 cut(s)	1010, 1505
AvaII	GGWCC	2 cut(s)	384, 1501
BaeGI	GKGCMC	1 cut(s)	870
BaeI	ACNNNNGTAYC	2 cut(s)	1023, 1056
BalI	TGGCCA	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	938
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	2 cut(s)	334, 938
BbvI	GCAGC	1 cut(s)	1502
BccI	CCATC	7 cut(s)	265, 608, 622, 1093, 1470, 1566, 1701
BceAI	ACGGC	1 cut(s)	800
BciT130I	CCWGG	5 cut(s)	179, 1323, 1419, 1445, 1632
BclI	TGATCA	2 cut(s)	1093, 1216
BcoDI	GTCTC	4 cut(s)	1104, 1108, 1268, 1549
BfaI	CTAG	5 cut(s)	656, 776, 944, 1175, 1386
BfmI	CTRYAG	2 cut(s)	1035, 1636
BfuAI	ACCTGC	1 cut(s)	1439
BglI	GCCNNNNNGGC	1 cut(s)	1445
BisI	GCNGC	2 cut(s)	393, 1491
BlsI	GCNGC	2 cut(s)	394, 1492
Bme1390I	CCNGG	5 cut(s)	179, 1323, 1419, 1445, 1632
Bme18I	GGWCC	2 cut(s)	384, 1501
BmeT110I	CYCGRG	2 cut(s)	1010, 1505
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	384, 1501
BmiI	GGNNCC	1 cut(s)	1066
BmrFI	CCNGG	5 cut(s)	179, 1323, 1419, 1445, 1632
BmsI	GCATC	5 cut(s)	486, 579, 789, 882, 932
BmtI	GCTAGC	2 cut(s)	779, 1389
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	3 cut(s)	1090, 1172, 1305
Bpu10I	CCTNAGC	1 cut(s)	67
BpuEI	CTTGAG	2 cut(s)	320, 685
BsaHI	GRCGYC	1 cut(s)	428
BsaI	GGTCTC	3 cut(s)	1108, 1268, 1549
BsaJI	CCNNGG	6 cut(s)	14, 387, 1322, 1418, 1560, 1630
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 1170, 1200
Bsc4I	CCNNNNNNNGG	5 cut(s)	822, 1146, 1324, 1419, 1566
Bse1I	ACTGG	3 cut(s)	103, 331, 560
BseBI	CCWGG	5 cut(s)	179, 1323, 1419, 1445, 1632
BseDI	CCNNGG	6 cut(s)	14, 387, 1322, 1418, 1560, 1630
BseGI	GGATG	5 cut(s)	291, 475, 594, 724, 804
BseLI	CCNNNNNNNGG	5 cut(s)	822, 1146, 1324, 1419, 1566
BseMII	CTCAG	2 cut(s)	1764, 1824
BseNI	ACTGG	3 cut(s)	103, 331, 560
BseSI	GKGCMC	1 cut(s)	870
BseXI	GCAGC	1 cut(s)	1502
BsgI	GTGCAG	2 cut(s)	366, 659
Bsh1236I	CGCG	2 cut(s)	397, 872
BshFI	GGCC	3 cut(s)	19, 559, 1278
BsiHKAI	GWGCWC	2 cut(s)	334, 938
BsiHKCI	CYCGRG	2 cut(s)	1010, 1505
BslFI	GGGAC	3 cut(s)	674, 1613, 1748
BslI	CCNNNNNNNGG	5 cut(s)	822, 1146, 1324, 1419, 1566
BsmAI	GTCTC	4 cut(s)	1104, 1108, 1268, 1549
BsmFI	GGGAC	3 cut(s)	674, 1613, 1748
BsmI	GAATGC	3 cut(s)	226, 817, 1132
BsnI	GGCC	3 cut(s)	19, 559, 1278
Bso31I	GGTCTC	3 cut(s)	1108, 1268, 1549
BsoBI	CYCGRG	2 cut(s)	1010, 1505
Bsp1286I	GDGCHC	3 cut(s)	334, 870, 938
Bsp143I	GATC	6 cut(s)	508, 1093, 1116, 1216, 1314, 1599
Bsp19I	CCATGG	2 cut(s)	14, 1560
BspACI	CCGC	6 cut(s)	25, 175, 392, 402, 482, 1029
BspANI	GGCC	3 cut(s)	19, 559, 1278
BspCNI	CTCAG	2 cut(s)	1765, 1823
BspFNI	CGCG	2 cut(s)	397, 872
BspHI	TCATGA	1 cut(s)	1602
BspLI	GGNNCC	1 cut(s)	1066
BspMAI	CTGCAG	1 cut(s)	1039
BspMI	ACCTGC	1 cut(s)	1439
BspOI	GCTAGC	2 cut(s)	779, 1389
BspPI	GGATC	2 cut(s)	516, 1309
BspTNI	GGTCTC	3 cut(s)	1108, 1268, 1549
BsrI	ACTGG	3 cut(s)	103, 331, 560
BssECI	CCNNGG	6 cut(s)	14, 387, 1322, 1418, 1560, 1630
BssMI	GATC	6 cut(s)	508, 1093, 1116, 1216, 1314, 1599
BssNI	GRCGYC	1 cut(s)	428
BssT1I	CCWWGG	3 cut(s)	14, 387, 1560
Bst2UI	CCWGG	5 cut(s)	179, 1323, 1419, 1445, 1632
Bst4CI	ACNGT	2 cut(s)	966, 1640
Bst6I	CTCTTC	4 cut(s)	1187, 1242, 1374, 1791
BstACI	GRCGYC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstDEI	CTNAG	5 cut(s)	67, 756, 1305, 1773, 1810
BstDSI	CCRYGG	2 cut(s)	14, 1560
BstF5I	GGATG	5 cut(s)	291, 475, 594, 724, 804
BstFNI	CGCG	2 cut(s)	397, 872
BstHHI	GCGC	3 cut(s)	397, 874, 1081
BstKTI	GATC	6 cut(s)	511, 1096, 1119, 1219, 1317, 1602
BstMAI	GTCTC	4 cut(s)	1104, 1108, 1268, 1549
BstMBI	GATC	6 cut(s)	508, 1093, 1116, 1216, 1314, 1599
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 221, 338, 869, 1136, 1445
BstNI	CCWGG	5 cut(s)	179, 1323, 1419, 1445, 1632
BstNSI	RCATGY	6 cut(s)	215, 345, 355, 951, 1051, 1085
BstSCI	CCNGG	5 cut(s)	177, 1321, 1417, 1443, 1630
BstSFI	CTRYAG	2 cut(s)	1035, 1636
BstSLI	GKGCMC	1 cut(s)	870
BstUI	CGCG	2 cut(s)	397, 872
BstV1I	GCAGC	1 cut(s)	1502
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	2 cut(s)	508, 1314
BstYI	RGATCY	2 cut(s)	508, 1314
BsuRI	GGCC	3 cut(s)	19, 559, 1278
BtgI	CCRYGG	2 cut(s)	14, 1560
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	5 cut(s)	291, 475, 594, 724, 804
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	483, 567, 1645
BveI	ACCTGC	1 cut(s)	1439
CciI	TCATGA	1 cut(s)	1602
CfoI	GCGC	3 cut(s)	397, 874, 1081
Cfr13I	GGNCC	2 cut(s)	384, 1501
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	6 cut(s)	406, 522, 1032, 1309, 1590, 1735
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviQI	GTAC	6 cut(s)	406, 522, 1032, 1309, 1590, 1735
DdeI	CTNAG	5 cut(s)	67, 756, 1305, 1773, 1810
DpnI	GATC	6 cut(s)	510, 1095, 1118, 1218, 1316, 1601
DpnII	GATC	6 cut(s)	508, 1093, 1116, 1216, 1314, 1599
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	4 cut(s)	1187, 1242, 1374, 1791
EarI	CTCTTC	4 cut(s)	1187, 1242, 1374, 1791
Ecl136II	GAGCTC	1 cut(s)	936
Eco130I	CCWWGG	3 cut(s)	14, 387, 1560
Eco147I	AGGCCT	1 cut(s)	1278
Eco24I	GRGCYC	1 cut(s)	938
Eco31I	GGTCTC	3 cut(s)	1108, 1268, 1549
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	384, 1501
Eco53kI	GAGCTC	1 cut(s)	936
Eco57I	CTGAAG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	1010, 1505
EcoICRI	GAGCTC	1 cut(s)	936
EcoO109I	RGGNCCY	1 cut(s)	1501
EcoRII	CCWGG	5 cut(s)	177, 1321, 1417, 1443, 1630
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	3 cut(s)	14, 387, 1560
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	938
ErhI	CCWWGG	3 cut(s)	14, 387, 1560
FalI	AAGNNNNNCTT	2 cut(s)	1190, 1222
FaqI	GGGAC	3 cut(s)	674, 1613, 1748
FauI	CCCGC	2 cut(s)	182, 395
FauNDI	CATATG	1 cut(s)	145
FbaI	TGATCA	2 cut(s)	1093, 1216
Fnu4HI	GCNGC	2 cut(s)	393, 1491
FokI	GGATG	5 cut(s)	298, 482, 601, 731, 811
FriOI	GRGCYC	1 cut(s)	938
Fsp4HI	GCNGC	2 cut(s)	393, 1491
FspAI	RTGCGCAY	1 cut(s)	1080
FspBI	CTAG	5 cut(s)	656, 776, 944, 1175, 1386
FspI	TGCGCA	1 cut(s)	1080
GlaI	GCGC	3 cut(s)	396, 873, 1080
GluI	GCNGC	2 cut(s)	393, 1491
GsuI	CTGGAG	3 cut(s)	1090, 1172, 1305
HaeIII	GGCC	3 cut(s)	19, 559, 1278
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	3 cut(s)	397, 874, 1081
Hin1I	GRCGYC	1 cut(s)	428
Hin6I	GCGC	3 cut(s)	395, 872, 1079
HinP1I	GCGC	3 cut(s)	395, 872, 1079
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	2 cut(s)	917, 1150
HphI	GGTGA	3 cut(s)	100, 383, 1691
Hpy166II	GTNNAC	2 cut(s)	764, 953
Hpy188III	TCNNGA	6 cut(s)	1012, 1107, 1189, 1368, 1517, 1603
Hpy8I	GTNNAC	2 cut(s)	764, 953
Hpy99I	CGWCG	2 cut(s)	191, 419
HpyAV	CCTTC	3 cut(s)	498, 1268, 1492
HpyCH4III	ACNGT	2 cut(s)	966, 1640
HpyCH4IV	ACGT	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 221, 338, 869, 1136, 1445
HpyF3I	CTNAG	5 cut(s)	67, 756, 1305, 1773, 1810
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	428
HspAI	GCGC	3 cut(s)	395, 872, 1079
Ksp22I	TGATCA	2 cut(s)	1093, 1216
Kzo9I	GATC	6 cut(s)	508, 1093, 1116, 1216, 1314, 1599
LmnI	GCTCC	1 cut(s)	1668
Lsp1109I	GCAGC	1 cut(s)	1502
LweI	GCATC	5 cut(s)	486, 579, 789, 882, 932
MaeI	CTAG	5 cut(s)	656, 776, 944, 1175, 1386
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	4 cut(s)	6, 94, 803, 1253
MalI	GATC	6 cut(s)	510, 1095, 1118, 1218, 1316, 1601
MboI	GATC	6 cut(s)	508, 1093, 1116, 1216, 1314, 1599
MflI	RGATCY	2 cut(s)	508, 1314
MhlI	GDGCHC	3 cut(s)	334, 870, 938
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	8 cut(s)	231, 442, 971, 1485, 1549, 1789, 1823, 1832
MluNI	TGGCCA	1 cut(s)	19
MmeI	TCCRAC	2 cut(s)	336, 940
Mox20I	TGGCCA	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	2 cut(s)	1208, 1511
MslI	CAYNNNNRTG	3 cut(s)	1046, 1158, 1701
Msp20I	TGGCCA	1 cut(s)	19
MspR9I	CCNGG	5 cut(s)	179, 1323, 1419, 1445, 1632
Mva1269I	GAATGC	3 cut(s)	226, 817, 1132
MvaI	CCWGG	5 cut(s)	179, 1323, 1419, 1445, 1632
MvnI	CGCG	2 cut(s)	397, 872
MwoI	GCNNNNNNNGC	6 cut(s)	146, 221, 338, 869, 1136, 1445
NcoI	CCATGG	2 cut(s)	14, 1560
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	6 cut(s)	508, 1093, 1116, 1216, 1314, 1599
NheI	GCTAGC	2 cut(s)	775, 1385
NlaIV	GGNNCC	1 cut(s)	1066
NmuCI	GTSAC	2 cut(s)	94, 1253
NsbI	TGCGCA	1 cut(s)	1080
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	6 cut(s)	215, 345, 355, 951, 1051, 1085
PaeI	GCATGC	1 cut(s)	1085
PaeR7I	CTCGAG	2 cut(s)	1010, 1505
PagI	TCATGA	1 cut(s)	1602
PceI	AGGCCT	1 cut(s)	1278
PciI	ACATGT	1 cut(s)	1047
PcsI	WCGNNNNNNNCGW	2 cut(s)	414, 1369
PctI	GAATGC	3 cut(s)	226, 817, 1132
PfeI	GAWTC	2 cut(s)	917, 1150
PkrI	GCNGC	2 cut(s)	394, 1492
PpuMI	RGGWCCY	1 cut(s)	1501
PscI	ACATGT	1 cut(s)	1047
Psp124BI	GAGCTC	1 cut(s)	938
Psp5II	RGGWCCY	1 cut(s)	1501
Psp6I	CCWGG	5 cut(s)	177, 1321, 1417, 1443, 1630
PspGI	CCWGG	5 cut(s)	177, 1321, 1417, 1443, 1630
PspN4I	GGNNCC	1 cut(s)	1066
PspPI	GGNCC	2 cut(s)	384, 1501
PspPPI	RGGWCCY	1 cut(s)	1501
PspXI	VCTCGAGB	1 cut(s)	1505
PstI	CTGCAG	1 cut(s)	1039
PsuI	RGATCY	2 cut(s)	508, 1314
RsaI	GTAC	6 cut(s)	407, 523, 1033, 1310, 1591, 1736
RsaNI	GTAC	6 cut(s)	406, 522, 1032, 1309, 1590, 1735
RseI	CAYNNNNRTG	3 cut(s)	1046, 1158, 1701
SacI	GAGCTC	1 cut(s)	938
SaqAI	TTAA	2 cut(s)	1208, 1511
SatI	GCNGC	2 cut(s)	393, 1491
Sau3AI	GATC	6 cut(s)	508, 1093, 1116, 1216, 1314, 1599
Sau96I	GGNCC	2 cut(s)	384, 1501
ScrFI	CCNGG	5 cut(s)	179, 1323, 1419, 1445, 1632
SduI	GDGCHC	3 cut(s)	334, 870, 938
SfaNI	GCATC	5 cut(s)	486, 579, 789, 882, 932
SfcI	CTRYAG	2 cut(s)	1035, 1636
Sfr274I	CTCGAG	2 cut(s)	1010, 1505
SinI	GGWCC	2 cut(s)	384, 1501
SlaI	CTCGAG	2 cut(s)	1010, 1505
SmiMI	CAYNNNNRTG	3 cut(s)	1046, 1158, 1701
SmlI	CTYRAG	4 cut(s)	335, 664, 1010, 1505
SmoI	CTYRAG	4 cut(s)	335, 664, 1010, 1505
SphI	GCATGC	1 cut(s)	1085
Sse9I	AATT	8 cut(s)	231, 442, 971, 1485, 1549, 1789, 1823, 1832
SseBI	AGGCCT	1 cut(s)	1278
SsiI	CCGC	6 cut(s)	25, 175, 392, 402, 482, 1029
SspMI	CTAG	5 cut(s)	656, 776, 944, 1175, 1386
SstI	GAGCTC	1 cut(s)	938
StuI	AGGCCT	1 cut(s)	1278
StyD4I	CCNGG	5 cut(s)	177, 1321, 1417, 1443, 1630
StyI	CCWWGG	3 cut(s)	14, 387, 1560
TaaI	ACNGT	2 cut(s)	966, 1640
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	8 cut(s)	186, 304, 317, 489, 771, 909, 1011, 1506
TasI	AATT	8 cut(s)	231, 442, 971, 1485, 1549, 1789, 1823, 1832
TatI	WGTACW	1 cut(s)	1308
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	917, 1150
Tru1I	TTAA	2 cut(s)	1208, 1511
Tru9I	TTAA	2 cut(s)	1208, 1511
TscAI	CASTG	3 cut(s)	483, 567, 1645
TseFI	GTSAC	2 cut(s)	94, 1253
TseI	GCWGC	1 cut(s)	1490
Tsp45I	GTSAC	2 cut(s)	94, 1253
TspDTI	ATGAA	7 cut(s)	486, 674, 977, 1142, 1421, 1619, 1719
TspRI	CASTG	3 cut(s)	483, 567, 1645
VpaK11BI	GGWCC	2 cut(s)	384, 1501
XapI	RAATTY	3 cut(s)	442, 1549, 1823
XceI	RCATGY	6 cut(s)	215, 345, 355, 951, 1051, 1085
XhoI	CTCGAG	2 cut(s)	1010, 1505
XspI	CTAG	5 cut(s)	656, 776, 944, 1175, 1386
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.