Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Forward (+)

10662390 .. 10669881

Gene Structure 7492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011577

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5079 bp

ATGAAGCACCAGCAGAGCAGCTCATCGTCACCGTCGCAGTCGTCTGAGGCGGTCCCATCTTCTTCGTCGTCGTCGTCGTCCACTGTGACGACGGAACAATCACATCCCGCCACCTCGAACTTGGCAGCCGCGGCGGAGAAGCGAATACCGGCGGCGGCGCCGGAGGACCTTGCGGTGGGGTCGAGGGACGGCGGCGGGGCGCAGGAGACGGTGACGGTCGATCGGAGAGGGGAGTACTCGGCCGTGTGCAGATGGACGGTCCAGAATTTTCCGAGAATCAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTGGGAGGCTACGATTGCCGGTTGTTAATATACCCTAAGGGTGACTCACAGGCTCTGCCTGGGTACATCTCCATCTACCTCCAAATCATGGACCCGCGGGGGACCTCCTCCTCCAAATGGGACTGCTTCGCCAGCTACCGCCTCGCCATCGTCAACGTCGCCGACGATTCCAAGACCATTCACAGGGACAGCTGGCACCGCTTCTCCAGCAAGAAGAAATCACACGGTTGGTGCGATTTCACCCCCTCCTCTACTGTTTTTGATTCCAAGTTAGGTTTTCTTTTCAATTCCGACTCCGTTTTGATCACCGCCGATATTTTGATATTGAATGAGTCCGTTAATTTCACGCGAGATAATAATAACGAGCTGCAGTCATCTGCCGGCTCCATGATGTCATCTTCCGTCGTGGCCAGCCCGGTCTCCGATGTGTTGAGTGGCAAGTTCACTTGGAAGGTGCATAACTTTAGCTTGTTTAAGGATATGATTAAGACTCAGAAGATAATGAGCCCGGTGTTCCCCGCCGGAGAGTGTAATTTGAGGATTAGTGTTTATCAGAGCACTGTGAATGCTGTAGAGTATCTATCAATGTGTTTGGAGAGCAAGGATACTGACAAGACGGTTGTGTTGTCCGATAGAAGTTGTTGGTGTTTGTTTCGAATGTCTGTGTTGAACCAGAAGCCGGGGTCTAATCACATGCACAGGGACTCGTATGGGAGGTTTGCTGCCGATAATAAGAGCGGGGATAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTCTGATTTCGTTGGGCCAGAGTCAGGGTTTTTGGCAGATGATACCGCGGTGTTTAGTACCTCATTTCATGTGATAAAGGAGTTTAGTAGCTTTTCAAAGAATGGGGGATTGGCTGCAGGGAGGAGTGGTAGTGGGGCGAGGAAGTTGGATGGACATATGGGGAAATTTACTTGGAAGATTGAAAATTTCACAAAGCTGAAGGATCTATTGAAGAAGAGGAAGATAACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGGGACTGTCGGCTCATTGTTTATCCCCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACAGATTCACGGAACACTGCCAGTGATTGGAGTTGTTTTGTGAGTCATCGCTTGTCTGTTGTGAACCAGAAGATGGAAGAGAAGTCTGTCACAAAGGAGTCTCAGAACCGCTACTCCAAAGCTGCAAAGGACTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTCTTTGATCAAGATTCAGGGTTCCTTGATCAGGACACTGTTGTATTCTCTGCAGAGGTCCTTATATTGAAAGAGACATCAATTATGCAGGATTTGATTGATCAGGATACCGAGTCTGCTACCCAGATTGACAAGAATGTAAAACGAAGCTCTTTTACATGGAAGGTGGAGAACTTCCTGTCTTTTAAGGAAATAATGGAGACCCGAAAAATCTTTAGCAAATTTTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGGGTATATGAGTCCTTTGACACCATATGTATTTATTTGGAGAGTGATCAGTCAGTTGGCAGTGATCTGGACAAAAATTTCTGGGTGCGATATAGGATGGCTGTTGTGAATCAAAAGAACCCTGCCAAAACTGTGTGGAAGGAGTCTTCCATATGTACAAAGACTTGGAACAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCAGATGCAGGGTTTCTTGTCCGTGATACCGTTGTTTTTGTATGTGAAATATTGGACTGCTGTCCTTGGTTTGAGTTTTCAGACCTAGAGGTTTTTGCTTCCGAGGATGATCAGGATGCGTTGACAACAGATCCTGATGAACTTGTTGATTCTGAAGATAGTGAAGGAATAGGTGGTGACGAAGAAGATATCTTTAGAAACCTGCTTTCCAGAGCTGGATTTCACCTCACATATGGAGATAATCCGTCACAGCCACAGGTCACTTTACGAGAAAAGCTTCTGATGGATGCGGGTGCCATTGCTGGTTTCCTGACTGGACTCCGTGTTTATCTTGATGACCCTGCTAAAGTAAAGCGCCTGCTTCTTCCAACCAAGCTTTCTGGTAGCGGTGATGGAATGAAGGTCTTGAAGAATGATGAATCTTCTCCTAGTTTGATGAATTTACTAATGGGAGTCAAAGTGTTGCAGCAGGCTATTATTGATTTACTTTTGGACATTATGGTTGAGTGTTGCCAACCTACAGAAGGGAGTTGTAATGGTGATTTATCTGATGGAAACTCAAAAACTCTAGATGGAAGTGGAGCTGCTAGTCCGCTGCAATCTGATAGAGAAAATGGAGCAACAGAATCTGTGCATTGTCCTGTGTATGAGCGATTGGATACCAGTGTTGATGAAAGTACCAGTGCTTCGGCTGTTCAAAGTTCTGACATGCACGGGGTTGGCATCCCAGGAAAAACTCTTCCTGGGCAGCCAATTTACCCCCCAGAAACATCTGCAGGGGCATCAGAAAATGTGTCCCTTCGTTCAAAGACTAAGTGGCCAGAGCAATCTGAGGAGCTCTTAGGATTGATTGTAAACTCACTGAGAGCTTTGGATGGAGCTGTTCCACAAGGCTGTCCTGAACCAAGACGTAGGCCTCAGTCTGCACAAAAGATCGCTCTTGTACTGGATAAAGCTCCTAAGCATTTGCAGCCTGATCTGGTGTCTTTGGTGCCCAAGTTGGTTGAACATTCAGAGCATCCACTTGCTGCCTTTGCACTTATTGAACGATTGCAAAAGCCAGATGCAGAACTTGCATTGCGGACATCTGTTTTCGGTGCTCTGAGTCAACTGGACTGTGGCAGTGAAGTGTGGGAACGGGTTTTATCTCAATCTTTAGAGTTTTTGTCAGATTCAAACGAAGGACCTCTTGCTGCAACCATAGATTTCATATTTAAAGCTGCATCCCAGTGCCAACACCTACCTGAAGCAGTCAGATCTGTTCGTGTTAGGCTAAAGAATTTGGGTGTCGATGTTTCTCCTTGTGTCCTTGAATTATTGAGTAGAACTGTAAATAGCTGGGGAGATGTTGCTGAAACCATACTTAGAGATATTGATTGTGATGATGATTTCGGTGATAGTTGCTCGACTATGCATTCTGGGCTTTTCTTGTTTGGAGAACATGGGCCTTGTTCGGAACGGTTTCATTTGGTGGATGAGCAGGCGTTCCGGCCTTGTCACCATTTTTCTGATATTTACATCTTGATTGAGATGTTATCCATACCTTGTCTGGCTGTAGAAGCCTCTCAAACGTTTGAGAGAGCTGTAGCTCGTGGTGCTATTGTGGCTCATTCTGTGGCCATGGTTTTGGAAAGGCGCCTTGCTCAAAGATTGAACCTTGATGCCAGATTTGTTGCGGAAAGCTTTCAGCAGACAGATTTGGTAGTAGAGGGAGAAGCCAGTGAACAGCTGAGAGTCCAACAAGACGATTTTACTTCAGTTCTTGGTCTTACTGAAACATTGGCCCTCTCTAGAGATCCTTGTGTTAAGGGATTTGTGAAGATGCTCTACACATTGTTGTTCAAATGGTATGCTGACGAGTCTTATCGAGGGAGAATTCTAAAGAGACTTGTTGATCGTGCCACTAGTTCTACAGATAGTCGTCGTGAAATTGATCTAGATTTTGATATATTGGTGACACTAGCTTCTGAGGAGCAGGAAATTGTTAGACCAGTTTTGAGTATGATGCGGGAGGTTGCTGAACTTGCAAATGTCGATCGGGCTGCTCTTTGGCACCAGTTATGTGCTAGTGAAGATGAAATCATTCACATGCGGGAAGAGAGGAAAGCAGAAACCGCTAACATGGCTAGAGAAAAAGCTGTTATATTGCAAAAACTGAGTGAATCCGAGGCCACTAACAATCGTCTTAAGTCTGAAATGAAGGCTGAGAATGACCGCTTTGCTCGAGAAAAGAAGGAGCTCTCGGAACGAATACAAGAAGTTGAGAGTCAGCTTGAGTGGCACCGCTCAGAGCGAGATGATGAAATTAGAAAGCTCACTACAGATAGGAAAGTGTTTCAGGATCGTCTTCATGATGCAGAGACACAACTCTCTCAATTGAAGTCCCGAAAACGTGATGAATTGAAGAAAGTTGTGAAGGAGAAAAATGCTCTAGCTGAAAGGTTGAAGGGTGCTGAAGCTGCACGTAAAAGATTTGATGAAGAACTTAAACGGTATGCCACAGAGAAGCTAACTCGAGAGGAAATTCGACAATCTCTGGAGGATGAAGTACGGAGACTGACACAAACAGTAGGACAAACAGAAGGAGAGAAACGAGAGAAGGAAGAGCAGGTTGCTCGGTGTGAAGCCTATATTGATGGGATGGAATCAAAACTGCAGGCCTGCCAGCAATATATTCATACCCTTGAGGCTTCACTTCAGGAAGAAATGTCCCGGCATGCTCCTCTGTATGGTGCTGGTTTGGAGGCATTATCAATGAAGGAGTTGGAGACACTGTCCCGTATCCATGAAGAAGGGCTCAGGCAGATCCATACCCTTCAGCAGCGTAATGGTAGTCCAGCTGGCAGTCCCCTTGTAAGCCCGCACACACTCCCACACAATCATGGGCTATATCCTGCTGCACCCCCCCAAATGGCCGTTGGAGTGCCTCCTTCACTCATTCCAAACGGCGTTGGGATTCACAGCAATGGGCATGTGAATGGTGCTGTTGGACCCTGGTTCAACCATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

1693

Amino Acids

188.89

Weight (kDa)

5.47

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	84 - 210	5.4e-20	MATH domain
MATH	PF00917	88 - 212	1.3e-07	MATH domain
MATH_2	PF22486	251 - 383	1.9e-19	MATH domain
MATH_2	PF22486	419 - 553	8.2e-30	MATH domain
MATH	PF00917	449 - 555	1.4e-09	MATH domain
MATH_2	PF22486	584 - 706	5e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2277, 4666
AccB1I	GGYRCC	7 cut(s)	157, 507, 2360, 3058, 3702, 4119, 4347
AccB7I	CCANNNNNTGG	3 cut(s)	400, 1461, 1507
AccBSI	CCGCTC	2 cut(s)	1050, 4353
AccII	CGCG	4 cut(s)	131, 409, 661, 1139
AclI	AACGTT	1 cut(s)	3638
AclWI	GGATC	5 cut(s)	1302, 2192, 3857, 4416, 4867
AcoI	YGGCCR	5 cut(s)	240, 720, 2885, 3684, 4980
AcuI	CTGAAG	7 cut(s)	1310, 2241, 3333, 3807, 4542, 4748, 4868
AcyI	GRCGYC	2 cut(s)	158, 3703
AfaI	GTAC	8 cut(s)	236, 305, 377, 1150, 2011, 2746, 3012, 4617
AflII	CTTAAG	1 cut(s)	4253
AhlI	ACTAGT	2 cut(s)	1595, 3971
AjnI	CCWGG	4 cut(s)	370, 2794, 2809, 5060
AjuI	GAANNNNNNNTTGG	4 cut(s)	1184, 1216, 2428, 2460
AloI	GAACNNNNNNTCC	2 cut(s)	1532, 1564
Alw21I	GWGCWC	4 cut(s)	872, 2907, 3169, 4308
AlwI	GGATC	5 cut(s)	1302, 2192, 3857, 4416, 4867
AlwNI	CAGNNNCTG	3 cut(s)	367, 2201, 2696
Ama87I	CYCGRG	3 cut(s)	1386, 4290, 4581
Asp700I	GAANNNNTTC	4 cut(s)	2343, 3528, 3750, 4149
AspLEI	GCGC	4 cut(s)	160, 202, 2424, 3705
AsuC2I	CCSGG	4 cut(s)	728, 821, 993, 4780
AsuII	TTCGAA	1 cut(s)	967
AvaI	CYCGRG	3 cut(s)	1386, 4290, 4581
AvaII	GGWCC	8 cut(s)	52, 166, 259, 403, 414, 1657, 3251, 5057
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	2 cut(s)	292, 3063
BaeI	ACNNNNGTAYC	6 cut(s)	1125, 1158, 2085, 2118, 2718, 2751
BalI	TGGCCA	3 cut(s)	722, 2887, 3686
BanI	GGYRCC	7 cut(s)	157, 507, 2360, 3058, 3702, 4119, 4347
BanII	GRGCYC	4 cut(s)	821, 2907, 4308, 4866
BarI	GAAGNNNNNNTAC	6 cut(s)	1738, 1770, 2737, 2769, 3878, 3910
BauI	CACGAG	1 cut(s)	3657
BbsI	GAAGAC	2 cut(s)	1992, 4406
Bbv12I	GWGCWC	4 cut(s)	872, 2907, 3169, 4308
BceAI	ACGGC	4 cut(s)	205, 227, 4967, 5029
BcgI	CGANNNNNNTGC	6 cut(s)	289, 323, 4091, 4125, 4664, 4698
BciT130I	CCWGG	4 cut(s)	372, 2796, 2811, 5062
BciVI	GTATCC	4 cut(s)	910, 1699, 2719, 4859
BclI	TGATCA	6 cut(s)	615, 1606, 1627, 1699, 1900, 2176
BcnI	CCSGG	4 cut(s)	728, 821, 993, 4780
BcuI	ACTAGT	2 cut(s)	1595, 3971
BfoI	RGCGCY	3 cut(s)	161, 2425, 3706
BfrI	CTTAAG	1 cut(s)	4253
BfuAI	ACCTGC	2 cut(s)	2277, 4666
BfuI	GTATCC	4 cut(s)	910, 1699, 2719, 4859
BglII	AGATCT	1 cut(s)	3323
BmcAI	AGTACT	2 cut(s)	236, 305
Bme1390I	CCNGG	8 cut(s)	372, 728, 821, 993, 2796, 2811, 4780, 5062
Bme18I	GGWCC	8 cut(s)	52, 166, 259, 403, 414, 1657, 3251, 5057
BmeT110I	CYCGRG	3 cut(s)	1386, 4290, 4581
BmrFI	CCNGG	8 cut(s)	372, 728, 821, 993, 2796, 2811, 4780, 5062
BmrI	ACTGGG	2 cut(s)	1576, 3289
BmuI	ACTGGG	2 cut(s)	1576, 3289
BoxI	GACNNNNGTC	1 cut(s)	2127
BpiI	GAAGAC	2 cut(s)	1992, 4406
BpmI	CTGGAG	2 cut(s)	502, 4625
Bpu10I	CCTNAGC	2 cut(s)	3027, 4865
Bpu14I	TTCGAA	1 cut(s)	967
BpuEI	CTTGAG	2 cut(s)	4361, 4772
BpuMI	CCSGG	4 cut(s)	728, 821, 993, 4780
BsaAI	YACGTR	1 cut(s)	4532
BsaHI	GRCGYC	2 cut(s)	158, 3703
BsaI	GGTCTC	2 cut(s)	736, 1793
Bse118I	RCCGGY	3 cut(s)	148, 330, 692
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	3 cut(s)	2364, 3143, 5038
BseBI	CCWGG	4 cut(s)	372, 2796, 2811, 5062
BseMI	GCAATG	3 cut(s)	2364, 3143, 5038
BseRI	GAGGAG	7 cut(s)	409, 412, 550, 1228, 2915, 4052, 4779
BseSI	GKGCMC	2 cut(s)	292, 3063
BseX3I	CGGCCG	1 cut(s)	240
BseYI	CCCAGC	1 cut(s)	3405
BsgI	GTGCAG	4 cut(s)	268, 2976, 4512, 4950
Bsh1236I	CGCG	4 cut(s)	131, 409, 661, 1139
Bsh1285I	CGRYCG	4 cut(s)	219, 223, 243, 4105
BshNI	GGYRCC	7 cut(s)	157, 507, 2360, 3058, 3702, 4119, 4347
BsiEI	CGRYCG	4 cut(s)	219, 223, 243, 4105
BsiHKAI	GWGCWC	4 cut(s)	872, 2907, 3169, 4308
BsiHKCI	CYCGRG	3 cut(s)	1386, 4290, 4581
BsmBI	CGTCTC	1 cut(s)	200
BsmI	GAATGC	2 cut(s)	883, 3481
Bso31I	GGTCTC	2 cut(s)	736, 1793
BsoBI	CYCGRG	3 cut(s)	1386, 4290, 4581
Bsp119I	TTCGAA	1 cut(s)	967
Bsp1286I	GDGCHC	8 cut(s)	292, 821, 872, 2907, 3063, 3169, 4308, 4866
Bsp1407I	TGTACA	1 cut(s)	2009
Bsp19I	CCATGG	1 cut(s)	3687
BspFNI	CGCG	4 cut(s)	131, 409, 661, 1139
BspHI	TCATGA	2 cut(s)	2043, 4417
BspMAI	CTGCAG	5 cut(s)	684, 1210, 1654, 2845, 4725
BspMI	ACCTGC	2 cut(s)	2277, 4666
BspPI	GGATC	5 cut(s)	1302, 2192, 3857, 4416, 4867
BspQI	GCTCTTC	1 cut(s)	4665
BspT104I	TTCGAA	1 cut(s)	967
BspT107I	GGYRCC	7 cut(s)	157, 507, 2360, 3058, 3702, 4119, 4347
BspTI	CTTAAG	1 cut(s)	4253
BspTNI	GGTCTC	2 cut(s)	736, 1793
BsrBI	CCGCTC	2 cut(s)	1050, 4353
BsrDI	GCAATG	3 cut(s)	2364, 3143, 5038
BsrFI	RCCGGY	3 cut(s)	148, 330, 692
BsrGI	TGTACA	1 cut(s)	2009
BssAI	RCCGGY	3 cut(s)	148, 330, 692
BssNI	GRCGYC	2 cut(s)	158, 3703
BssSI	CACGAG	1 cut(s)	3657
BssT1I	CCWWGG	2 cut(s)	2132, 3687
Bst2BI	CACGAG	1 cut(s)	3657
Bst2UI	CCWGG	4 cut(s)	372, 2796, 2811, 5062
Bst6I	CTCTTC	5 cut(s)	1301, 1506, 2811, 4158, 4665
BstACI	GRCGYC	2 cut(s)	158, 3703
BstAFI	CTTAAG	1 cut(s)	4253
BstAPI	GCANNNNNTGC	1 cut(s)	3140
BstAUI	TGTACA	1 cut(s)	2009
BstBAI	YACGTR	1 cut(s)	4532
BstBI	TTCGAA	1 cut(s)	967
BstDSI	CCRYGG	4 cut(s)	129, 407, 1137, 3687
BstENI	CCTNNNNNAGG	2 cut(s)	1628, 2589
BstFNI	CGCG	4 cut(s)	131, 409, 661, 1139
BstH2I	RGCGCY	3 cut(s)	161, 2425, 3706
BstHHI	GCGC	4 cut(s)	160, 202, 2424, 3705
BstMCI	CGRYCG	4 cut(s)	219, 223, 243, 4105
BstNI	CCWGG	4 cut(s)	372, 2796, 2811, 5062
BstNSI	RCATGY	5 cut(s)	1009, 2779, 4159, 4787, 5042
BstPAI	GACNNNNGTC	1 cut(s)	2127
BstSCI	CCNGG	8 cut(s)	370, 726, 819, 991, 2794, 2809, 4778, 5060
BstSLI	GKGCMC	2 cut(s)	292, 3063
BstUI	CGCG	4 cut(s)	131, 409, 661, 1139
BstV2I	GAAGAC	2 cut(s)	1992, 4406
BstX2I	RGATCY	5 cut(s)	1294, 2197, 3323, 3862, 4872
BstXI	CCANNNNNNTGG	1 cut(s)	3694
BstYI	RGATCY	5 cut(s)	1294, 2197, 3323, 3862, 4872
BstZI	CGGCCG	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	348
BsuI	GTATCC	4 cut(s)	910, 1699, 2719, 4859
BtgI	CCRYGG	4 cut(s)	129, 407, 1137, 3687
BtgZI	GCGATG	1 cut(s)	1466
BtsI	GCAGTG	3 cut(s)	1449, 1921, 3196
BveI	ACCTGC	2 cut(s)	2277, 4666
CaiI	CAGNNNCTG	3 cut(s)	367, 2201, 2696
CciI	TCATGA	2 cut(s)	2043, 4417
CfoI	GCGC	4 cut(s)	160, 202, 2424, 3705
Cfr10I	RCCGGY	3 cut(s)	148, 330, 692
Cfr42I	CCGCGG	3 cut(s)	132, 410, 1140
CseI	GACGC	1 cut(s)	1597
Csp6I	GTAC	8 cut(s)	235, 304, 376, 1149, 2010, 2745, 3011, 4616
CviQI	GTAC	8 cut(s)	235, 304, 376, 1149, 2010, 2745, 3011, 4616
DinI	GGCGCC	2 cut(s)	159, 3704
DraI	TTTAAA	1 cut(s)	3283
EaeI	YGGCCR	5 cut(s)	240, 720, 2885, 3684, 4980
EagI	CGGCCG	1 cut(s)	240
Eam1104I	CTCTTC	5 cut(s)	1301, 1506, 2811, 4158, 4665
EarI	CTCTTC	5 cut(s)	1301, 1506, 2811, 4158, 4665
EciI	GGCGGA	1 cut(s)	149
Ecl136II	GAGCTC	2 cut(s)	2905, 4306
EclXI	CGGCCG	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	2132, 3687
Eco147I	AGGCCT	2 cut(s)	2983, 4727
Eco24I	GRGCYC	4 cut(s)	821, 2907, 4308, 4866
Eco31I	GGTCTC	2 cut(s)	736, 1793
Eco32I	GATATC	1 cut(s)	2257
Eco47I	GGWCC	8 cut(s)	52, 166, 259, 403, 414, 1657, 3251, 5057
Eco52I	CGGCCG	1 cut(s)	240
Eco53kI	GAGCTC	2 cut(s)	2905, 4306
Eco57I	CTGAAG	7 cut(s)	1310, 2241, 3333, 3807, 4542, 4748, 4868
Eco81I	CCTNAGG	1 cut(s)	348
Eco88I	CYCGRG	3 cut(s)	1386, 4290, 4581
EcoICRI	GAGCTC	2 cut(s)	2905, 4306
EcoNI	CCTNNNNNAGG	2 cut(s)	1628, 2589
EcoO109I	RGGNCCY	4 cut(s)	166, 414, 1657, 3251
EcoRI	GAATTC	1 cut(s)	3942
EcoRII	CCWGG	4 cut(s)	370, 2794, 2809, 5060
EcoRV	GATATC	1 cut(s)	2257
EcoT14I	CCWWGG	2 cut(s)	2132, 3687
EcoT22I	ATGCAT	1 cut(s)	3483
EcoT38I	GRGCYC	4 cut(s)	821, 2907, 4308, 4866
EgeI	GGCGCC	2 cut(s)	159, 3704
EheI	GGCGCC	2 cut(s)	159, 3704
ErhI	CCWWGG	2 cut(s)	2132, 3687
Esp3I	CGTCTC	1 cut(s)	200
FalI	AAGNNNNNCTT	2 cut(s)	3240, 3272
FauNDI	CATATG	4 cut(s)	1248, 1880, 2006, 2299
FbaI	TGATCA	6 cut(s)	615, 1606, 1627, 1699, 1900, 2176
FriOI	GRGCYC	4 cut(s)	821, 2907, 4308, 4866
GlaI	GCGC	4 cut(s)	159, 201, 2423, 3704
GsaI	CCCAGC	1 cut(s)	3409
GsuI	CTGGAG	2 cut(s)	502, 4625
HaeII	RGCGCY	3 cut(s)	161, 2425, 3706
HgaI	GACGC	1 cut(s)	1597
HhaI	GCGC	4 cut(s)	160, 202, 2424, 3705
Hin1I	GRCGYC	2 cut(s)	158, 3703
Hin6I	GCGC	4 cut(s)	158, 200, 2422, 3703
HinP1I	GCGC	4 cut(s)	158, 200, 2422, 3703
HincII	GTYRAC	3 cut(s)	466, 2190, 3176
HindII	GTYRAC	3 cut(s)	466, 2190, 3176
HindIII	AAGCTT	3 cut(s)	2342, 2441, 3748
Hpy166II	GTNNAC	8 cut(s)	81, 466, 756, 1498, 2190, 2923, 3176, 3791
Hpy8I	GTNNAC	8 cut(s)	81, 466, 756, 1498, 2190, 2923, 3176, 3791
HpyCH4IV	ACGT	5 cut(s)	468, 2977, 3638, 4459, 4531
HpySE526I	ACGT	5 cut(s)	468, 2977, 3638, 4459, 4531
Hsp92I	GRCGYC	2 cut(s)	158, 3703
HspAI	GCGC	4 cut(s)	158, 200, 2422, 3703
KasI	GGCGCC	2 cut(s)	157, 3702
KroI	GCCGGC	1 cut(s)	692
KroNI	GCCGGC	1 cut(s)	694
Ksp22I	TGATCA	6 cut(s)	615, 1606, 1627, 1699, 1900, 2176
KspI	CCGCGG	3 cut(s)	132, 410, 1140
LguI	GCTCTTC	1 cut(s)	4665
MaeII	ACGT	5 cut(s)	468, 2977, 3638, 4459, 4531
MbiI	CCGCTC	2 cut(s)	1050, 4353
MfeI	CAATTG	1 cut(s)	4442
MflI	RGATCY	5 cut(s)	1294, 2197, 3323, 3862, 4872
MhlI	GDGCHC	8 cut(s)	292, 821, 872, 2907, 3063, 3169, 4308, 4866
MlsI	TGGCCA	3 cut(s)	722, 2887, 3686
MluNI	TGGCCA	3 cut(s)	722, 2887, 3686
Mly113I	GGCGCC	2 cut(s)	158, 3703
MmeI	TCCRAC	8 cut(s)	627, 1218, 2043, 2459, 3829, 4812, 4966, 5035
Mox20I	TGGCCA	3 cut(s)	722, 2887, 3686
Mph1103I	ATGCAT	1 cut(s)	3483
MroNI	GCCGGC	1 cut(s)	692
MroXI	GAANNNNTTC	4 cut(s)	2343, 3528, 3750, 4149
MscI	TGGCCA	3 cut(s)	722, 2887, 3686
MseI	TTAA	9 cut(s)	338, 651, 786, 798, 1785, 3282, 3873, 4254, 4554
MslI	CAYNNNNRTG	5 cut(s)	3295, 4154, 4947, 5031, 5043
Msp20I	TGGCCA	3 cut(s)	722, 2887, 3686
MspA1I	CMGCKG	7 cut(s)	131, 409, 504, 1139, 2662, 3796, 4907
MspCI	CTTAAG	1 cut(s)	4253
MspR9I	CCNGG	8 cut(s)	372, 728, 821, 993, 2796, 2811, 4780, 5062
MunI	CAATTG	1 cut(s)	4442
Mva1269I	GAATGC	2 cut(s)	883, 3481
MvaI	CCWGG	4 cut(s)	372, 2796, 2811, 5062
MvnI	CGCG	4 cut(s)	131, 409, 661, 1139
NaeI	GCCGGC	1 cut(s)	694
NarI	GGCGCC	2 cut(s)	158, 3703
NciI	CCSGG	4 cut(s)	728, 821, 993, 4780
NcoI	CCATGG	1 cut(s)	3687
NdeI	CATATG	4 cut(s)	1248, 1880, 2006, 2299
NgoMIV	GCCGGC	1 cut(s)	692
NmeAIII	GCCGAG	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	3483
NspI	RCATGY	5 cut(s)	1009, 2779, 4159, 4787, 5042
NspV	TTCGAA	1 cut(s)	967
PaeI	GCATGC	1 cut(s)	4787
PaeR7I	CTCGAG	2 cut(s)	4290, 4581
PagI	TCATGA	2 cut(s)	2043, 4417
PceI	AGGCCT	2 cut(s)	2983, 4727
PciSI	GCTCTTC	1 cut(s)	4665
PcsI	WCGNNNNNNNCGW	4 cut(s)	71, 74, 474, 543
PctI	GAATGC	2 cut(s)	883, 3481
PdiI	GCCGGC	1 cut(s)	694
PdmI	GAANNNNTTC	4 cut(s)	2343, 3528, 3750, 4149
PflFI	GACNNNGTC	1 cut(s)	4840
PflMI	CCANNNNNTGG	3 cut(s)	400, 1461, 1507
Ple19I	CGATCG	2 cut(s)	223, 4105
PluTI	GGCGCC	2 cut(s)	161, 3706
Ppu21I	YACGTR	1 cut(s)	4532
PpuMI	RGGWCCY	4 cut(s)	166, 414, 1657, 3251
PshAI	GACNNNNGTC	1 cut(s)	2127
Psp124BI	GAGCTC	2 cut(s)	2907, 4308
Psp1406I	AACGTT	1 cut(s)	3638
Psp5II	RGGWCCY	4 cut(s)	166, 414, 1657, 3251
Psp6I	CCWGG	4 cut(s)	370, 2794, 2809, 5060
PspFI	CCCAGC	1 cut(s)	3405
PspGI	CCWGG	4 cut(s)	370, 2794, 2809, 5060
PspPPI	RGGWCCY	4 cut(s)	166, 414, 1657, 3251
PstI	CTGCAG	5 cut(s)	684, 1210, 1654, 2845, 4725
PstNI	CAGNNNCTG	3 cut(s)	367, 2201, 2696
PsuI	RGATCY	5 cut(s)	1294, 2197, 3323, 3862, 4872
PsyI	GACNNNGTC	1 cut(s)	4840
PvuI	CGATCG	2 cut(s)	223, 4105
PvuII	CAGCTG	3 cut(s)	504, 3796, 4907
RsaI	GTAC	8 cut(s)	236, 305, 377, 1150, 2011, 2746, 3012, 4617
RsaNI	GTAC	8 cut(s)	235, 304, 376, 1149, 2010, 2745, 3011, 4616
RseI	CAYNNNNRTG	5 cut(s)	3295, 4154, 4947, 5031, 5043
SacI	GAGCTC	2 cut(s)	2907, 4308
SacII	CCGCGG	3 cut(s)	132, 410, 1140
SapI	GCTCTTC	1 cut(s)	4665
SaqAI	TTAA	9 cut(s)	338, 651, 786, 798, 1785, 3282, 3873, 4254, 4554
ScaI	AGTACT	2 cut(s)	236, 305
ScrFI	CCNGG	8 cut(s)	372, 728, 821, 993, 2796, 2811, 4780, 5062
SduI	GDGCHC	8 cut(s)	292, 821, 872, 2907, 3063, 3169, 4308, 4866
SfoI	GGCGCC	2 cut(s)	159, 3704
Sfr274I	CTCGAG	2 cut(s)	4290, 4581
Sfr303I	CCGCGG	3 cut(s)	132, 410, 1140
SfuI	TTCGAA	1 cut(s)	967
SgrBI	CCGCGG	3 cut(s)	132, 410, 1140
SinI	GGWCC	8 cut(s)	52, 166, 259, 403, 414, 1657, 3251, 5057
SlaI	CTCGAG	2 cut(s)	4290, 4581
SmiMI	CAYNNNNRTG	5 cut(s)	3295, 4154, 4947, 5031, 5043
SmlI	CTYRAG	5 cut(s)	4253, 4290, 4340, 4581, 4751
SmoI	CTYRAG	5 cut(s)	4253, 4290, 4340, 4581, 4751
SpeI	ACTAGT	2 cut(s)	1595, 3971
SphI	GCATGC	1 cut(s)	4787
SseBI	AGGCCT	2 cut(s)	2983, 4727
SspDI	GGCGCC	2 cut(s)	157, 3702
SspI	AATATT	1 cut(s)	2118
SstI	GAGCTC	2 cut(s)	2907, 4308
StuI	AGGCCT	2 cut(s)	2983, 4727
StyD4I	CCNGG	8 cut(s)	370, 726, 819, 991, 2794, 2809, 4778, 5060
StyI	CCWWGG	2 cut(s)	2132, 3687
TaiI	ACGT	5 cut(s)	471, 2980, 3641, 4462, 4534
TatI	WGTACW	4 cut(s)	234, 303, 2009, 3010
TauI	GCSGC	5 cut(s)	131, 134, 155, 158, 195
Tru1I	TTAA	9 cut(s)	338, 651, 786, 798, 1785, 3282, 3873, 4254, 4554
Tru9I	TTAA	9 cut(s)	338, 651, 786, 798, 1785, 3282, 3873, 4254, 4554
TspGWI	ACGGA	9 cut(s)	107, 598, 637, 703, 1459, 2078, 2301, 2378, 4633
Tth111I	GACNNNGTC	1 cut(s)	4840
Van91I	CCANNNNNTGG	3 cut(s)	400, 1461, 1507
Vha464I	CTTAAG	1 cut(s)	4253
VpaK11BI	GGWCC	8 cut(s)	52, 166, 259, 403, 414, 1657, 3251, 5057
XagI	CCTNNNNNAGG	2 cut(s)	1628, 2589
XbaI	TCTAGA	3 cut(s)	2635, 3857, 4003
XceI	RCATGY	5 cut(s)	1009, 2779, 4159, 4787, 5042
XcmI	CCANNNNNNNNNTGG	3 cut(s)	118, 3613, 4982
XhoI	CTCGAG	2 cut(s)	4290, 4581
XmnI	GAANNNNTTC	4 cut(s)	2343, 3528, 3750, 4149
ZrmI	AGTACT	2 cut(s)	236, 305
Zsp2I	ATGCAT	1 cut(s)	3483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.