meprin and TRAF homology
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25320 AT2G25320 AT2G25320 |
| fragaria_vesca | FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 |
| malus_domestica | MD08G1156500.v1.1 MD15G1127100.v1.1 |
| prunus_persica | Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 |
| pyrus_communis | pycom08g12870 pycom15g11460 |
| rosa_chinensis | RchiOBHm_Chr6g0297611 |
| rosa_laevigata | RLG00000011577 |
| rosa_multiflora | Rmu_ssc0000319.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00170320 |
| rosa_rugosa | Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600 |
| rosa_samantha | Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600 |
| rosa_wichuraiana | Rw6G033550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2992 |
| AbsI | CCTCGAGG | 1 cut(s) | 4763 |
| Acc36I | ACCTGC | 2 cut(s) | 3160, 4678 |
| AccB1I | GGYRCC | 6 cut(s) | 416, 3070, 3674, 3714, 4131, 4359 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 403, 1519 |
| AccBSI | CCGCTC | 2 cut(s) | 3570, 4365 |
| AccI | GTMKAC | 1 cut(s) | 3908 |
| AccII | CGCG | 4 cut(s) | 412, 446, 501, 664 |
| AclWI | GGATC | 5 cut(s) | 1314, 2213, 3869, 4428, 4879 |
| AcoI | YGGCCR | 4 cut(s) | 732, 2897, 3696, 4995 |
| AcuI | CTGAAG | 8 cut(s) | 2262, 3819, 3980, 4068, 4400, 4554, 4760, 4880 |
| AcyI | GRCGYC | 2 cut(s) | 2989, 3715 |
| AfaI | GTAC | 9 cut(s) | 239, 308, 380, 875, 1162, 2032, 2805, 3024, 4629 |
| AfeI | AGCGCT | 1 cut(s) | 4531 |
| AflII | CTTAAG | 1 cut(s) | 4265 |
| AgeI | ACCGGT | 1 cut(s) | 739 |
| AhlI | ACTAGT | 2 cut(s) | 1073, 1607 |
| AjiI | CACGTC | 1 cut(s) | 2788 |
| AjnI | CCWGG | 3 cut(s) | 185, 1003, 2821 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1857, 1889 |
| AleI | CACNNNNGTG | 1 cut(s) | 4170 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2532, 2564 |
| Alw21I | GWGCWC | 7 cut(s) | 20, 693, 884, 2919, 2950, 3090, 3181 |
| AlwI | GGATC | 5 cut(s) | 1314, 2213, 3869, 4428, 4879 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 370, 725, 2222, 2717, 3152 |
| Ama87I | CYCGRG | 7 cut(s) | 520, 1398, 2174, 3571, 4302, 4593, 4763 |
| Aor51HI | AGCGCT | 1 cut(s) | 4531 |
| AoxI | GGCC | 9 cut(s) | 732, 2897, 2993, 3696, 3861, 4248, 4737, 4873, 4995 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2636, 2668 |
| AseI | ATTAAT | 1 cut(s) | 1214 |
| AsiGI | ACCGGT | 1 cut(s) | 739 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 138, 2364, 3129, 3540, 4161 |
| AspLEI | GCGC | 7 cut(s) | 163, 370, 2744, 3037, 3717, 4532, 4541 |
| AsuC2I | CCSGG | 3 cut(s) | 375, 833, 2857 |
| AsuHPI | GGTGA | 8 cut(s) | 368, 898, 2276, 2303, 2639, 3527, 4045, 4504 |
| AsuII | TTCGAA | 4 cut(s) | 581, 979, 1199, 1870 |
| AvaI | CYCGRG | 7 cut(s) | 520, 1398, 2174, 3571, 4302, 4593, 4763 |
| AxyI | CCTNAGG | 2 cut(s) | 351, 4877 |
| BaeGI | GKGCMC | 4 cut(s) | 205, 295, 419, 3075 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1137, 1170, 2106, 2139 |
| BalI | TGGCCA | 2 cut(s) | 2899, 3698 |
| BanI | GGYRCC | 6 cut(s) | 416, 3070, 3674, 3714, 4131, 4359 |
| BanII | GRGCYC | 8 cut(s) | 20, 693, 833, 884, 2409, 2919, 2950, 4943 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4611, 4643 |
| BauI | CACGAG | 1 cut(s) | 3669 |
| BbsI | GAAGAC | 1 cut(s) | 2250 |
| Bbv12I | GWGCWC | 7 cut(s) | 20, 693, 884, 2919, 2950, 3090, 3181 |
| BbvCI | CCTCAGC | 1 cut(s) | 3852 |
| BceAI | ACGGC | 5 cut(s) | 208, 907, 3314, 4646, 4982 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 63, 97, 292, 326, 2165, 2199 |
| BciT130I | CCWGG | 3 cut(s) | 187, 1005, 2823 |
| BciVI | GTATCC | 3 cut(s) | 317, 1711, 2728 |
| BclI | TGATCA | 2 cut(s) | 1618, 2197 |
| BcnI | CCSGG | 3 cut(s) | 375, 833, 2857 |
| BcuI | ACTAGT | 2 cut(s) | 1073, 1607 |
| BfmI | CTRYAG | 5 cut(s) | 2552, 2709, 3663, 3990, 4398 |
| BfoI | RGCGCY | 6 cut(s) | 164, 371, 2745, 3038, 3718, 4533 |
| BfrI | CTTAAG | 1 cut(s) | 4265 |
| BfuAI | ACCTGC | 2 cut(s) | 3160, 4678 |
| BfuI | GTATCC | 3 cut(s) | 317, 1711, 2728 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3683 |
| BglII | AGATCT | 2 cut(s) | 2170, 3335 |
| BmcAI | AGTACT | 2 cut(s) | 239, 308 |
| Bme1390I | CCNGG | 6 cut(s) | 187, 375, 833, 1005, 2823, 2857 |
| BmeT110I | CYCGRG | 7 cut(s) | 520, 1398, 2174, 3571, 4302, 4593, 4763 |
| BmgBI | CACGTC | 1 cut(s) | 2788 |
| BmrFI | CCNGG | 6 cut(s) | 187, 375, 833, 1005, 2823, 2857 |
| BmrI | ACTGGG | 4 cut(s) | 1588, 2412, 2802, 3301 |
| BmuI | ACTGGG | 4 cut(s) | 1588, 2412, 2802, 3301 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2148 |
| BpiI | GAAGAC | 1 cut(s) | 2250 |
| BpmI | CTGGAG | 5 cut(s) | 185, 867, 1495, 2640, 2826 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3852 |
| Bpu14I | TTCGAA | 4 cut(s) | 581, 979, 1199, 1870 |
| BpuEI | CTTGAG | 1 cut(s) | 4373 |
| BpuMI | CCSGG | 3 cut(s) | 375, 833, 2857 |
| BsaAI | YACGTR | 1 cut(s) | 4544 |
| BsaHI | GRCGYC | 2 cut(s) | 2989, 3715 |
| BsaI | GGTCTC | 1 cut(s) | 1814 |
| BsaWI | WCCGGW | 2 cut(s) | 739, 3547 |
| Bse118I | RCCGGY | 4 cut(s) | 151, 333, 704, 739 |
| Bse21I | CCTNAGG | 2 cut(s) | 351, 4877 |
| Bse3DI | GCAATG | 2 cut(s) | 1738, 5053 |
| BseBI | CCWGG | 3 cut(s) | 187, 1005, 2823 |
| BseMI | GCAATG | 2 cut(s) | 1738, 5053 |
| BseRI | GAGGAG | 7 cut(s) | 49, 52, 55, 1240, 1538, 2927, 4791 |
| BseSI | GKGCMC | 4 cut(s) | 205, 295, 419, 3075 |
| BseYI | CCCAGC | 1 cut(s) | 3417 |
| Bsh1236I | CGCG | 4 cut(s) | 412, 446, 501, 664 |
| Bsh1285I | CGRYCG | 1 cut(s) | 226 |
| BshFI | GGCC | 9 cut(s) | 734, 2899, 2995, 3698, 3863, 4250, 4739, 4875, 4997 |
| BshNI | GGYRCC | 6 cut(s) | 416, 3070, 3674, 3714, 4131, 4359 |
| BshTI | ACCGGT | 1 cut(s) | 739 |
| BsiEI | CGRYCG | 1 cut(s) | 226 |
| BsiHKAI | GWGCWC | 7 cut(s) | 20, 693, 884, 2919, 2950, 3090, 3181 |
| BsiHKCI | CYCGRG | 7 cut(s) | 520, 1398, 2174, 3571, 4302, 4593, 4763 |
| BslFI | GGGAC | 9 cut(s) | 203, 449, 1021, 1040, 1132, 1388, 2629, 4447, 4774 |
| BsmBI | CGTCTC | 1 cut(s) | 3816 |
| BsmFI | GGGAC | 9 cut(s) | 203, 449, 1021, 1040, 1132, 1388, 2629, 4447, 4774 |
| BsmI | GAATGC | 2 cut(s) | 3960, 5010 |
| BsnI | GGCC | 9 cut(s) | 734, 2899, 2995, 3698, 3863, 4250, 4739, 4875, 4997 |
| Bso31I | GGTCTC | 1 cut(s) | 1814 |
| BsoBI | CYCGRG | 7 cut(s) | 520, 1398, 2174, 3571, 4302, 4593, 4763 |
| Bsp119I | TTCGAA | 4 cut(s) | 581, 979, 1199, 1870 |
| Bsp1407I | TGTACA | 1 cut(s) | 2030 |
| Bsp19I | CCATGG | 2 cut(s) | 3699, 5075 |
| Bsp68I | TCGCGA | 2 cut(s) | 446, 501 |
| BspANI | GGCC | 9 cut(s) | 734, 2899, 2995, 3698, 3863, 4250, 4739, 4875, 4997 |
| BspFNI | CGCG | 4 cut(s) | 412, 446, 501, 664 |
| BspHI | TCATGA | 2 cut(s) | 2064, 4429 |
| BspMAI | CTGCAG | 1 cut(s) | 2556 |
| BspMI | ACCTGC | 2 cut(s) | 3160, 4678 |
| BspPI | GGATC | 5 cut(s) | 1314, 2213, 3869, 4428, 4879 |
| BspQI | GCTCTTC | 3 cut(s) | 2770, 4520, 4677 |
| BspT104I | TTCGAA | 4 cut(s) | 581, 979, 1199, 1870 |
| BspT107I | GGYRCC | 6 cut(s) | 416, 3070, 3674, 3714, 4131, 4359 |
| BspTI | CTTAAG | 1 cut(s) | 4265 |
| BspTNI | GGTCTC | 1 cut(s) | 1814 |
| BsrBI | CCGCTC | 2 cut(s) | 3570, 4365 |
| BsrDI | GCAATG | 2 cut(s) | 1738, 5053 |
| BsrFI | RCCGGY | 4 cut(s) | 151, 333, 704, 739 |
| BsrGI | TGTACA | 1 cut(s) | 2030 |
| BssAI | RCCGGY | 4 cut(s) | 151, 333, 704, 739 |
| BssNAI | GTATAC | 1 cut(s) | 3909 |
| BssNI | GRCGYC | 2 cut(s) | 2989, 3715 |
| BssSI | CACGAG | 1 cut(s) | 3669 |
| BssT1I | CCWWGG | 3 cut(s) | 2153, 3699, 5075 |
| Bst1107I | GTATAC | 1 cut(s) | 3909 |
| Bst2BI | CACGAG | 1 cut(s) | 3669 |
| Bst2UI | CCWGG | 3 cut(s) | 187, 1005, 2823 |
| Bst6I | CTCTTC | 5 cut(s) | 1313, 2770, 3956, 4520, 4677 |
| BstACI | GRCGYC | 2 cut(s) | 2989, 3715 |
| BstAFI | CTTAAG | 1 cut(s) | 4265 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3152 |
| BstAUI | TGTACA | 1 cut(s) | 2030 |
| BstBAI | YACGTR | 1 cut(s) | 4544 |
| BstBI | TTCGAA | 4 cut(s) | 581, 979, 1199, 1870 |
| BstDSI | CCRYGG | 4 cut(s) | 177, 410, 3699, 5075 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2610 |
| BstFNI | CGCG | 4 cut(s) | 412, 446, 501, 664 |
| BstH2I | RGCGCY | 6 cut(s) | 164, 371, 2745, 3038, 3718, 4533 |
| BstHHI | GCGC | 7 cut(s) | 163, 370, 2744, 3037, 3717, 4532, 4541 |
| BstMCI | CGRYCG | 1 cut(s) | 226 |
| BstNI | CCWGG | 3 cut(s) | 187, 1005, 2823 |
| BstNSI | RCATGY | 4 cut(s) | 1021, 4171, 4799, 5057 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2148 |
| BstSCI | CCNGG | 6 cut(s) | 185, 373, 831, 1003, 2821, 2855 |
| BstSFI | CTRYAG | 5 cut(s) | 2552, 2709, 3663, 3990, 4398 |
| BstSLI | GKGCMC | 4 cut(s) | 205, 295, 419, 3075 |
| BstUI | CGCG | 4 cut(s) | 412, 446, 501, 664 |
| BstV2I | GAAGAC | 1 cut(s) | 2250 |
| BstX2I | RGATCY | 6 cut(s) | 1306, 2170, 2218, 3335, 3874, 4884 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 1004, 1856, 1931, 3706, 5048 |
| BstYI | RGATCY | 6 cut(s) | 1306, 2170, 2218, 3335, 3874, 4884 |
| BstZ17I | GTATAC | 1 cut(s) | 3909 |
| Bsu36I | CCTNAGG | 2 cut(s) | 351, 4877 |
| BsuI | GTATCC | 3 cut(s) | 317, 1711, 2728 |
| BsuRI | GGCC | 9 cut(s) | 734, 2899, 2995, 3698, 3863, 4250, 4739, 4875, 4997 |
| BtgI | CCRYGG | 4 cut(s) | 177, 410, 3699, 5075 |
| BtgZI | GCGATG | 2 cut(s) | 96, 482 |
| BtrI | CACGTC | 1 cut(s) | 2788 |
| BtsI | GCAGTG | 2 cut(s) | 2482, 3208 |
| BtsIMutI | CAGTG | 8 cut(s) | 293, 1437, 1647, 2254, 2482, 3208, 3314, 4653 |
| BtuMI | TCGCGA | 2 cut(s) | 446, 501 |
| BveI | ACCTGC | 2 cut(s) | 3160, 4678 |
| CaiI | CAGNNNCTG | 5 cut(s) | 370, 725, 2222, 2717, 3152 |
| CciI | TCATGA | 2 cut(s) | 2064, 4429 |
| CfoI | GCGC | 7 cut(s) | 163, 370, 2744, 3037, 3717, 4532, 4541 |
| Cfr10I | RCCGGY | 4 cut(s) | 151, 333, 704, 739 |
| Cfr42I | CCGCGG | 1 cut(s) | 413 |
| CpoI | CGGWCCG | 2 cut(s) | 737, 3771 |
| CseI | GACGC | 1 cut(s) | 1609 |
| Csp6I | GTAC | 9 cut(s) | 238, 307, 379, 874, 1161, 2031, 2804, 3023, 4628 |
| CspAI | ACCGGT | 1 cut(s) | 739 |
| CspI | CGGWCCG | 2 cut(s) | 737, 3771 |
| CviQI | GTAC | 9 cut(s) | 238, 307, 379, 874, 1161, 2031, 2804, 3023, 4628 |
| DinI | GGCGCC | 1 cut(s) | 3716 |
| DraI | TTTAAA | 2 cut(s) | 1314, 3295 |
| EaeI | YGGCCR | 4 cut(s) | 732, 2897, 3696, 4995 |
| Eam1104I | CTCTTC | 5 cut(s) | 1313, 2770, 3956, 4520, 4677 |
| EarI | CTCTTC | 5 cut(s) | 1313, 2770, 3956, 4520, 4677 |
| EciI | GGCGGA | 3 cut(s) | 58, 101, 2842 |
| Ecl136II | GAGCTC | 5 cut(s) | 18, 691, 882, 2917, 2948 |
| Eco130I | CCWWGG | 3 cut(s) | 2153, 3699, 5075 |
| Eco147I | AGGCCT | 2 cut(s) | 4739, 4875 |
| Eco24I | GRGCYC | 8 cut(s) | 20, 693, 833, 884, 2409, 2919, 2950, 4943 |
| Eco31I | GGTCTC | 1 cut(s) | 1814 |
| Eco32I | GATATC | 2 cut(s) | 2278, 4027 |
| Eco47III | AGCGCT | 1 cut(s) | 4531 |
| Eco53kI | GAGCTC | 5 cut(s) | 18, 691, 882, 2917, 2948 |
| Eco57I | CTGAAG | 8 cut(s) | 2262, 3819, 3980, 4068, 4400, 4554, 4760, 4880 |
| Eco81I | CCTNAGG | 2 cut(s) | 351, 4877 |
| Eco88I | CYCGRG | 7 cut(s) | 520, 1398, 2174, 3571, 4302, 4593, 4763 |
| EcoICRI | GAGCTC | 5 cut(s) | 18, 691, 882, 2917, 2948 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2610 |
| EcoO109I | RGGNCCY | 2 cut(s) | 169, 1669 |
| EcoRI | GAATTC | 2 cut(s) | 118, 3493 |
| EcoRII | CCWGG | 3 cut(s) | 185, 1003, 2821 |
| EcoRV | GATATC | 2 cut(s) | 2278, 4027 |
| EcoT14I | CCWWGG | 3 cut(s) | 2153, 3699, 5075 |
| EcoT22I | ATGCAT | 2 cut(s) | 1023, 2209 |
| EcoT38I | GRGCYC | 8 cut(s) | 20, 693, 833, 884, 2409, 2919, 2950, 4943 |
| EgeI | GGCGCC | 1 cut(s) | 3716 |
| EheI | GGCGCC | 1 cut(s) | 3716 |
| ErhI | CCWWGG | 3 cut(s) | 2153, 3699, 5075 |
| Esp3I | CGTCTC | 1 cut(s) | 3816 |
| FaqI | GGGAC | 9 cut(s) | 203, 449, 1021, 1040, 1132, 1388, 2629, 4447, 4774 |
| FauI | CCCGC | 7 cut(s) | 109, 188, 222, 405, 417, 4080, 4807 |
| FauNDI | CATATG | 1 cut(s) | 1901 |
| FbaI | TGATCA | 2 cut(s) | 1618, 2197 |
| FblI | GTMKAC | 1 cut(s) | 3908 |
| FriOI | GRGCYC | 8 cut(s) | 20, 693, 833, 884, 2409, 2919, 2950, 4943 |
| GlaI | GCGC | 7 cut(s) | 162, 369, 2743, 3036, 3716, 4531, 4540 |
| GsaI | CCCAGC | 1 cut(s) | 3421 |
| GsuI | CTGGAG | 5 cut(s) | 185, 867, 1495, 2640, 2826 |
| HaeII | RGCGCY | 6 cut(s) | 164, 371, 2745, 3038, 3718, 4533 |
| HaeIII | GGCC | 9 cut(s) | 734, 2899, 2995, 3698, 3863, 4250, 4739, 4875, 4997 |
| HgaI | GACGC | 1 cut(s) | 1609 |
| HhaI | GCGC | 7 cut(s) | 163, 370, 2744, 3037, 3717, 4532, 4541 |
| Hin1I | GRCGYC | 2 cut(s) | 2989, 3715 |
| Hin6I | GCGC | 7 cut(s) | 161, 368, 2742, 3035, 3715, 4530, 4539 |
| HinP1I | GCGC | 7 cut(s) | 161, 368, 2742, 3035, 3715, 4530, 4539 |
| HincII | GTYRAC | 4 cut(s) | 469, 1510, 3188, 3370 |
| HindII | GTYRAC | 4 cut(s) | 469, 1510, 3188, 3370 |
| HindIII | AAGCTT | 2 cut(s) | 137, 2462 |
| HpaI | GTTAAC | 1 cut(s) | 1510 |
| HphI | GGTGA | 8 cut(s) | 368, 898, 2276, 2303, 2639, 3527, 4045, 4504 |
| HpyCH4IV | ACGT | 4 cut(s) | 2787, 2989, 4471, 4543 |
| HpySE526I | ACGT | 4 cut(s) | 2787, 2989, 4471, 4543 |
| Hsp92I | GRCGYC | 2 cut(s) | 2989, 3715 |
| HspAI | GCGC | 7 cut(s) | 161, 368, 2742, 3035, 3715, 4530, 4539 |
| KasI | GGCGCC | 1 cut(s) | 3714 |
| Ksp22I | TGATCA | 2 cut(s) | 1618, 2197 |
| KspAI | GTTAAC | 1 cut(s) | 1510 |
| KspI | CCGCGG | 1 cut(s) | 413 |
| LguI | GCTCTTC | 3 cut(s) | 2770, 4520, 4677 |
| LmnI | GCTCC | 9 cut(s) | 125, 300, 696, 2412, 2669, 2705, 2914, 2957, 4804 |
| MaeII | ACGT | 4 cut(s) | 2787, 2989, 4471, 4543 |
| MbiI | CCGCTC | 2 cut(s) | 3570, 4365 |
| MfeI | CAATTG | 2 cut(s) | 1273, 4454 |
| MflI | RGATCY | 6 cut(s) | 1306, 2170, 2218, 3335, 3874, 4884 |
| MlsI | TGGCCA | 2 cut(s) | 2899, 3698 |
| MluNI | TGGCCA | 2 cut(s) | 2899, 3698 |
| Mly113I | GGCGCC | 1 cut(s) | 3715 |
| Mox20I | TGGCCA | 2 cut(s) | 2899, 3698 |
| Mph1103I | ATGCAT | 2 cut(s) | 1023, 2209 |
| MroXI | GAANNNNTTC | 5 cut(s) | 138, 2364, 3129, 3540, 4161 |
| MscI | TGGCCA | 2 cut(s) | 2899, 3698 |
| MslI | CAYNNNNRTG | 7 cut(s) | 2026, 2069, 3307, 4170, 4962, 5046, 5058 |
| Msp20I | TGGCCA | 2 cut(s) | 2899, 3698 |
| MspA1I | CMGCKG | 4 cut(s) | 412, 1664, 3769, 3808 |
| MspCI | CTTAAG | 1 cut(s) | 4265 |
| MspR9I | CCNGG | 6 cut(s) | 187, 375, 833, 1005, 2823, 2857 |
| MunI | CAATTG | 2 cut(s) | 1273, 4454 |
| Mva1269I | GAATGC | 2 cut(s) | 3960, 5010 |
| MvaI | CCWGG | 3 cut(s) | 187, 1005, 2823 |
| MvnI | CGCG | 4 cut(s) | 412, 446, 501, 664 |
| NarI | GGCGCC | 1 cut(s) | 3715 |
| NciI | CCSGG | 3 cut(s) | 375, 833, 2857 |
| NcoI | CCATGG | 2 cut(s) | 3699, 5075 |
| NdeI | CATATG | 1 cut(s) | 1901 |
| NruI | TCGCGA | 2 cut(s) | 446, 501 |
| NsiI | ATGCAT | 2 cut(s) | 1023, 2209 |
| NspI | RCATGY | 4 cut(s) | 1021, 4171, 4799, 5057 |
| NspV | TTCGAA | 4 cut(s) | 581, 979, 1199, 1870 |
| OliI | CACNNNNGTG | 1 cut(s) | 4170 |
| PaeR7I | CTCGAG | 5 cut(s) | 520, 2174, 3571, 4302, 4763 |
| PagI | TCATGA | 2 cut(s) | 2064, 4429 |
| PceI | AGGCCT | 2 cut(s) | 4739, 4875 |
| PciSI | GCTCTTC | 3 cut(s) | 2770, 4520, 4677 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 47, 50, 546, 4300 |
| PctI | GAATGC | 2 cut(s) | 3960, 5010 |
| PdmI | GAANNNNTTC | 5 cut(s) | 138, 2364, 3129, 3540, 4161 |
| PflFI | GACNNNGTC | 1 cut(s) | 1123 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 403, 1519 |
| PfoI | TCCNGGA | 1 cut(s) | 2821 |
| PinAI | ACCGGT | 1 cut(s) | 739 |
| Ple19I | CGATCG | 1 cut(s) | 226 |
| PluTI | GGCGCC | 1 cut(s) | 3718 |
| Ppu21I | YACGTR | 1 cut(s) | 4544 |
| PpuMI | RGGWCCY | 2 cut(s) | 169, 1669 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2148 |
| PshBI | ATTAAT | 1 cut(s) | 1214 |
| Psp124BI | GAGCTC | 5 cut(s) | 20, 693, 884, 2919, 2950 |
| Psp5II | RGGWCCY | 2 cut(s) | 169, 1669 |
| Psp6I | CCWGG | 3 cut(s) | 185, 1003, 2821 |
| PspFI | CCCAGC | 1 cut(s) | 3417 |
| PspGI | CCWGG | 3 cut(s) | 185, 1003, 2821 |
| PspPPI | RGGWCCY | 2 cut(s) | 169, 1669 |
| PspXI | VCTCGAGB | 2 cut(s) | 3571, 4763 |
| PstI | CTGCAG | 1 cut(s) | 2556 |
| PstNI | CAGNNNCTG | 5 cut(s) | 370, 725, 2222, 2717, 3152 |
| PsuI | RGATCY | 6 cut(s) | 1306, 2170, 2218, 3335, 3874, 4884 |
| PsyI | GACNNNGTC | 1 cut(s) | 1123 |
| PvuI | CGATCG | 1 cut(s) | 226 |
| PvuII | CAGCTG | 1 cut(s) | 3808 |
| RruI | TCGCGA | 2 cut(s) | 446, 501 |
| RsaI | GTAC | 9 cut(s) | 239, 308, 380, 875, 1162, 2032, 2805, 3024, 4629 |
| RsaNI | GTAC | 9 cut(s) | 238, 307, 379, 874, 1161, 2031, 2804, 3023, 4628 |
| RseI | CAYNNNNRTG | 7 cut(s) | 2026, 2069, 3307, 4170, 4962, 5046, 5058 |
| Rsr2I | CGGWCCG | 2 cut(s) | 737, 3771 |
| RsrII | CGGWCCG | 2 cut(s) | 737, 3771 |
| SacI | GAGCTC | 5 cut(s) | 20, 693, 884, 2919, 2950 |
| SacII | CCGCGG | 1 cut(s) | 413 |
| SapI | GCTCTTC | 3 cut(s) | 2770, 4520, 4677 |
| ScaI | AGTACT | 2 cut(s) | 239, 308 |
| ScrFI | CCNGG | 6 cut(s) | 187, 375, 833, 1005, 2823, 2857 |
| SfcI | CTRYAG | 5 cut(s) | 2552, 2709, 3663, 3990, 4398 |
| SfoI | GGCGCC | 1 cut(s) | 3716 |
| Sfr274I | CTCGAG | 5 cut(s) | 520, 2174, 3571, 4302, 4763 |
| Sfr303I | CCGCGG | 1 cut(s) | 413 |
| SfuI | TTCGAA | 4 cut(s) | 581, 979, 1199, 1870 |
| SgrBI | CCGCGG | 1 cut(s) | 413 |
| SlaI | CTCGAG | 5 cut(s) | 520, 2174, 3571, 4302, 4763 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 2026, 2069, 3307, 4170, 4962, 5046, 5058 |
| SmlI | CTYRAG | 7 cut(s) | 520, 2174, 3571, 4265, 4302, 4352, 4763 |
| SmoI | CTYRAG | 7 cut(s) | 520, 2174, 3571, 4265, 4302, 4352, 4763 |
| SpeI | ACTAGT | 2 cut(s) | 1073, 1607 |
| SseBI | AGGCCT | 2 cut(s) | 4739, 4875 |
| SspDI | GGCGCC | 1 cut(s) | 3714 |
| SspI | AATATT | 1 cut(s) | 2139 |
| SstI | GAGCTC | 5 cut(s) | 20, 693, 884, 2919, 2950 |
| StuI | AGGCCT | 2 cut(s) | 4739, 4875 |
| StyD4I | CCNGG | 6 cut(s) | 185, 373, 831, 1003, 2821, 2855 |
| StyI | CCWWGG | 3 cut(s) | 2153, 3699, 5075 |
| TaiI | ACGT | 4 cut(s) | 2790, 2992, 4474, 4546 |
| TaqII | GACCGA | 2 cut(s) | 3541, 3788 |
| TatI | WGTACW | 5 cut(s) | 237, 306, 1160, 2030, 3022 |
| TauI | GCSGC | 3 cut(s) | 74, 158, 161 |
| TscAI | CASTG | 8 cut(s) | 300, 1437, 1654, 2254, 2482, 3208, 3314, 4653 |
| TspRI | CASTG | 8 cut(s) | 300, 1437, 1654, 2254, 2482, 3208, 3314, 4653 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1123 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 403, 1519 |
| Vha464I | CTTAAG | 1 cut(s) | 4265 |
| VspI | ATTAAT | 1 cut(s) | 1214 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2610 |
| XbaI | TCTAGA | 4 cut(s) | 2297, 2950, 3869, 4015 |
| XceI | RCATGY | 4 cut(s) | 1021, 4171, 4799, 5057 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 3625, 4961, 4997 |
| XhoI | CTCGAG | 5 cut(s) | 520, 2174, 3571, 4302, 4763 |
| XmiI | GTMKAC | 1 cut(s) | 3908 |
| XmnI | GAANNNNTTC | 5 cut(s) | 138, 2364, 3129, 3540, 4161 |
| ZraI | GACGTC | 1 cut(s) | 2990 |
| ZrmI | AGTACT | 2 cut(s) | 239, 308 |
| Zsp2I | ATGCAT | 2 cut(s) | 1023, 2209 |