Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Reverse (-)

58092445 .. 58099931

Gene Structure 7487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5049 bp

ATGAAGCACCAGCAGAGCAGCTCATCGTCACCGTCGCAGTCGTCTGAGGCGGTCCCGTCTTCTTCGTCGTCGTCGTCGTCGTCCACTGTGACGACGGACCAATCGCATCCCGCCACCTCGAACTCGGCATCCGCGGCGGAGAAGCCGCTGCCAATACCGGCGGCGGCGGCGGAGGACCTTGCGGTGGGGTCGAGGGACGGCGGCGGGGCGCAGGAGACGGTGACGGTCGATCGGAGAGGGGAGTACTCGGCCGTGTGCAGATGGACGGTCCAGAATTTTCCGAGAATCAAAGCTAGGGCACTTTGGAGCAAGTACTTCGAGGTGGGAGGGTACGATTGCCGGTTGTTAATATACCCTAAGGGTGACTCACAGGCTCTGCCTGGGTACATCTCCATCTACCTCCAAATCATGGACCCGCGGGGCACCTCCTCCTCCAAATGGGACTGCTTCGCCAGCTACCGCCTCGCCATCGTCAACGTCGCCGACGATTCCAAGACCATTCACAGGGACAGCTGGCACCGCTTCTCCAGCAAGAAGAAATCACACGGTTGGTGCGATTTCACCCCCTCCTCTACTGTTTTTGATTCCAAGTTAGGTTATCTTTTCAATTCCGACTCCGTTTTGATCACCGCCGATATTTTGATATTGAATGAGTCCGTTCATTTCACGCGAGATAATAATAACGAGCTGCAGTCATCTGCCGGCTCCATGATGTCATCTTCCGTCGTGGCCAGCCCGGTCTCCGATGTGTTGAGTGGCAAGTTCACTTGGAAGGTGCATAACTTTAGCTTGTTTAAGGATATGATTAAGACGCAGAAGGTAATGAGCCCGGTGTTCCCCGCCGGCGAGTGTAATTTGAGGATTAGTGTTTATCAGAGCACTGTTAATGCTGTAGAGTATTTGTCAATGTGTTTGGAGAGCAAGGATACTGACAAGACGGTTGTGTTGTCCGATAGAAGTTGTTGGTGTTTGTTTCGAATGTCTGTGTTGAACCAGAAGCCGGGGTCTAATCACATGCACAGGGACTCGTATGGGAGGTTTGCTGCCGATAATAAGAGCGGGGATAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTCAGATTTCGTTGGGCCAGAGTCGGGGTTTTTGGCAGATGATACCGCGGTGTTTAGTACCTCATTTCATGTGATAAAGGAGTTTAGTAGCTTTTCGAAGAATGGGGGATTGGCGGCAGGGAGGAGTGGTAGTGGGCCGAGGAAGTTGGATGGACATATGGGGAAATTTACTTGGAAGATTGAAAATTTCACAAAGTTGAAGGATCTATTAAAGAAGAGGAAGATAACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGGGACTGTCGGCTCATTGTTTATCCCCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACAGATTCACGGAACACTGCCAGTGATTGGAGTTGTTTTGTGAGTCATCGCTTGTCTGTTGTGAACCTGAAGATGGAAGAGAAGTCTGTCACAAAGGAGTCTCAGAACCGCTACTCCAAAGCTGCAAAGGACTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTCTTTGATCAAGATTCAGGGTTCCTTCTTCAGGACACTGTTGTATTCTCTGCAGAGGTCCTTATATTGAAAGAGACGTCAATTATGCAGGATTTGATTGATCAGGATACCGAGTCTGCTACCCAGATTGACAAGAATGTAAAACGAAGCTCTTTTACATGGAAGGTGGAGAACTTCCTGTCTTTTAAGGAAATAATGGAGACCCGAAAAATCTTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGGGTATATGAGTCCTTTGACACCATTTGTATTTATTTGGAGAGTGATCAGTCAGTTGGCAGTGATCTGGACAAAAATTTTTGGGTGCGATATAGGATGGCTGTTGTGAATCAAAAGAACCCTGCCAAAACTGTGTGGAAGGAGTCTTCCATATGTACAAAGACTTGGAACAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCAGATGCAGGGTTTCTTGTCCGTGATACCGTTGTTTTTGTATGTGAAATATTGGACTGCTGTCCTTGGTTTGAGTTTTCAGACCTAGAGGTTTTTGCTTCCGAGGATGATCAGGATGCGTTGACAACAGATCCTGATGAACTTGTTGATTCTGAAGAAAACCTACTTTCCAGAGCTGGATTTCACCTCACGTATGGAGATAATCCGTCACAGCCACAGGTCACTTTACGAGAAAAGCTTCTGATGGATGCGGGTGCCATTGCTGGTTTCCTGACTGGACTCCGTGTTTATCTTGATGACCCTGCTAAAGTAAAGCGCCTGCTTCTTCCAACCAAGCTTTCTGGTAGCGGTGATGGAATGAAGGTCTTAAAGAATGATGAATCTTCTCCTAGTTTGATGAATTTACTAATGGGAGTCAAAGTGTTGCAGCAGGCTATTATTGATTTACTTTTGGACATTATGGTTGAGTGTTGCCAACCTACAGAAGGGAGTTGTAATGGTGATTTATCTGATGGAAACTCAAAAACTCCAGATGGAAGTGGAGCTGCTAGTCCGCTGCAATCTGATAGAGAAAATGGAGCAACAGAATCTGTGCATTGTCCAGTGTATGAGCGTTTGGATGCCAGTGTTGATGAAAGTACCAGTGGTTCGGCTGTTCAAAGTTCTGACATGCACGGGGTTGGTATCCCAGGAAAAACTCTTCCTGGGCAGCCAATTTACCCCCCAGAAACATCTGCAGGGGCATCAGAAAATGTGTCCCTTCGTTCAAAGACTAAGTGGCCAGAGCAATCTGAGGAGCTCTTAGGATTGATTGTAAACTCACTGAGAGCTTTGGATGGAGCTGTTCCACAAGGCTGTCCTGAACCAAGACGTAGGCCTCAGTCTGCACAAAAGATCGCTCTTGTGCTGGATAAAGCTCCTAAGCATTTGCAGCCTGATCTGGTGTCTTTGGTGCCCAAGTTGGTTGAACATTCAGAGCATCCACTTGCTGCCTTTGCACTTATTGAACGATTGCAAAAGCCAGATGCAGAACTTGCATTGCGGACACCTGTTTTCGGTGCTCTGAGTCAACTGGACTGTGGCAGTGAAGTGTGGGAACGGGTTTTATCTCAATCTTTAGAGTTTTTGGCAGATTCAAACGATGAACCTCTTGCTGCAACCATAGATTTCATATTTAAAGCTGCATCCCAGTGCCAACACCTACCTGAAGCAGTCAGATCTGTTCGTGTTAGGCTAAAGAATTTGGGTGTCGATGTTTCTCCTTGTGTCCTTGAATTATTGAGTAGAACTATAAATAGCTGGGGAGATGTTGCTGAAACCATACTTAGAGATATTGATTGTGATGATGATTTTGATGATAGTTGCTCGACTATGCATTCTGGGCTTTTCTTGTTTGGAGAACATGGGCCTTGTTCGGAACGGTTTCATTTGGTGGATGAGCAGGCTTTCCGGCCTTGTCGCCATTTTTCTGATATTTACATCTTGATTGAGATGTTATCCATACCTTGTCTGGCTGTAGAAGCCTCTCAAACGTTTGAGAGAGCTGTAGCTCGTGGTGCTATTGTGGCTCATTCTGTGGCCATGGTTTTGGAAAGGCGCCTTGCTCAAAGATTGAACCTTGATGCTAGATTTGTTGCGGAAAGCTTTCAGCAGACAGATTTGGTTGTAGAGGGAGAAGCCAGTGAACAGCTGAGAGTCCAACAAGACGATTTTACTTCAGTTCTTGGTCTTGCTGAAACATTGGCCCTCTCTAGAGATCCTTGTGTTAAGGGATTTGTGAAGATGCTCTACACATTATTGTTCAAATGGTATGCTGATGAGTCTTATCGAGGGAGAATTCTAAAGAGACTTGTTGATCGTGCCACTAGTACTACAGATAGTAGTCGTGAAATTGATCTAGATTTTGATATATTGGTGACACTAGCTTCTGAGGAGCAGGAAATTGTTAGACCAGTTTTGAGTATTGTGCGGGAGGTTGCTGAACTTGCAAATGTTGATCGGGCTGCTCTTTGGCACCAGTTATGTGCTAGTGAAGATGAAATCATTCGCATGCGGGAAGAGAGGAAAGCAGAAACTGCTAACATGGCTAGAGAAAAAGCTGTTATATTGCAAAAACTGAGTGAATCCGAGGCCACTAACAACCGTCTTAAGTCTGAAATGAAGGCTGAGAATGACCGCTTTGCTCGAGAAAAGAAGGAGCTCTCGGAACGAATACAAGAAGTTGAGAGTCAGCTTGAGTGGCACCGCTCAGAGCGAGATGATGAAATTAGAAAGCTCACTACAGATAGGAAAGTGTTTCAGGATCGTCTTCATGATGCAGAGACACAACTCTCTCAATTGAAGTCCCGAAAACGTGATGAATTGAAGAAAGTTGTGAAGGAGAAAAATGCTCTAGCTGAAAGGTTGAAGGGTGCTGAAGCTGCACGTAAAAGATTTGATGAAGAACTTAAACGGTATGCCACAGAGAAGGTGACTCGAGAGGAAATTCGACAATCTCTGGAGGATGAAGTACGGAGACTGACACAAACAGTAGGACAAACAGAAGGAGAGAAACGAGAGAAGGAAGAGCAGGTTGCTCGGTGTGAAGCCTATATTGATGGGATGGAATCAAAACTGCAGGCCTGCCAGCAATATATTCATACCCTTGAGGCTTCACTTCAGGAAGAAATGTCCCGGCATGCTCCTCTGTATGGTGCTGGTTTGGAGGCATTATCAATGAAGGAGTTGGAGACACTGTCCCGTATACATGAAGAAGGGCTCAGGCAGATCCATACCCTTCAGCAGCGTAAGGGTAGTCCAGCTGGCAGTCCCCTTGTAAGCCCGCACACGCTCCCACACAATCATGGGCTATATCCTGCCGCACCCCCCCAAATGGCCGTTGGAGTGCCTCCTTCACTCATTCCAAACGGTGTTGGGATTCACAGCAATGGGCATGTGAATGGTGCTGTTGGACCCTGGTTCAACCATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

1682

Amino Acids

187.69

Weight (kDa)

5.54

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	87 - 213	3.2e-20	MATH domain
MATH	PF00917	91 - 215	9.9e-08	MATH domain
MATH_2	PF22486	254 - 386	3.5e-19	MATH domain
MATH_2	PF22486	422 - 556	3.6e-28	MATH domain
MATH	PF00917	452 - 558	2e-08	MATH domain
MATH_2	PF22486	587 - 709	4.9e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1688
Acc36I	ACCTGC	1 cut(s)	4636
AccB1I	GGYRCC	7 cut(s)	422, 516, 2330, 3028, 3672, 4089, 4317
AccB7I	CCANNNNNTGG	2 cut(s)	409, 1470
AccBSI	CCGCTC	2 cut(s)	1059, 4323
AccI	GTMKAC	1 cut(s)	4819
AccII	CGCG	4 cut(s)	134, 418, 670, 1148
AclI	AACGTT	1 cut(s)	3608
AclWI	GGATC	5 cut(s)	1311, 2201, 3827, 4386, 4837
AcoI	YGGCCR	5 cut(s)	249, 729, 2855, 3654, 4950
AcuI	CTGAAG	8 cut(s)	1532, 1622, 2250, 3303, 3777, 4512, 4718, 4838
AcyI	GRCGYC	2 cut(s)	1685, 3673
AfaI	GTAC	9 cut(s)	245, 314, 332, 386, 1159, 2020, 2716, 3946, 4587
AflII	CTTAAG	1 cut(s)	4223
AhlI	ACTAGT	2 cut(s)	1604, 3941
AjnI	CCWGG	4 cut(s)	379, 2764, 2779, 5030
AjuI	GAANNNNNNNTTGG	4 cut(s)	1193, 1225, 2398, 2430
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 1541, 1573
Alw21I	GWGCWC	4 cut(s)	881, 2877, 3139, 4278
AlwI	GGATC	5 cut(s)	1311, 2201, 3827, 4386, 4837
AlwNI	CAGNNNCTG	4 cut(s)	376, 2210, 2666, 4151
Ama87I	CYCGRG	3 cut(s)	1395, 4260, 4551
Asp700I	GAANNNNTTC	4 cut(s)	2313, 3498, 3720, 4119
AspLEI	GCGC	3 cut(s)	211, 2394, 3675
AsuC2I	CCSGG	4 cut(s)	737, 830, 1002, 4750
AsuII	TTCGAA	2 cut(s)	976, 1196
AvaI	CYCGRG	3 cut(s)	1395, 4260, 4551
AvaII	GGWCC	7 cut(s)	52, 97, 175, 268, 412, 1666, 5027
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	3 cut(s)	301, 425, 3033
BaeI	ACNNNNGTAYC	4 cut(s)	1134, 1167, 2094, 2127
BalI	TGGCCA	3 cut(s)	731, 2857, 3656
BanI	GGYRCC	7 cut(s)	422, 516, 2330, 3028, 3672, 4089, 4317
BanII	GRGCYC	4 cut(s)	830, 2877, 4278, 4836
BarI	GAAGNNNNNNTAC	6 cut(s)	1747, 1779, 2223, 2255, 3848, 3880
BauI	CACGAG	1 cut(s)	3627
BbsI	GAAGAC	3 cut(s)	51, 2001, 4376
Bbv12I	GWGCWC	4 cut(s)	881, 2877, 3139, 4278
BceAI	ACGGC	3 cut(s)	214, 236, 4937
BcgI	CGANNNNNNTGC	4 cut(s)	298, 332, 4634, 4668
BciT130I	CCWGG	4 cut(s)	381, 2766, 2781, 5032
BciVI	GTATCC	3 cut(s)	919, 1708, 2771
BclI	TGATCA	5 cut(s)	624, 1615, 1708, 1909, 2185
BcnI	CCSGG	4 cut(s)	737, 830, 1002, 4750
BcuI	ACTAGT	2 cut(s)	1604, 3941
BfoI	RGCGCY	2 cut(s)	2395, 3676
BfrI	CTTAAG	1 cut(s)	4223
BfuAI	ACCTGC	1 cut(s)	4636
BfuI	GTATCC	3 cut(s)	919, 1708, 2771
BglII	AGATCT	1 cut(s)	3293
BmcAI	AGTACT	3 cut(s)	245, 314, 3946
Bme1390I	CCNGG	8 cut(s)	381, 737, 830, 1002, 2766, 2781, 4750, 5032
Bme18I	GGWCC	7 cut(s)	52, 97, 175, 268, 412, 1666, 5027
BmeT110I	CYCGRG	3 cut(s)	1395, 4260, 4551
BmrFI	CCNGG	8 cut(s)	381, 737, 830, 1002, 2766, 2781, 4750, 5032
BmrI	ACTGGG	2 cut(s)	1585, 3259
BmuI	ACTGGG	2 cut(s)	1585, 3259
BoxI	GACNNNNGTC	1 cut(s)	2136
BpiI	GAAGAC	3 cut(s)	51, 2001, 4376
BpmI	CTGGAG	3 cut(s)	511, 2589, 4595
Bpu10I	CCTNAGC	2 cut(s)	2997, 4835
Bpu14I	TTCGAA	2 cut(s)	976, 1196
BpuEI	CTTGAG	2 cut(s)	4331, 4742
BpuMI	CCSGG	4 cut(s)	737, 830, 1002, 4750
BsaAI	YACGTR	2 cut(s)	2268, 4502
BsaHI	GRCGYC	2 cut(s)	1685, 3673
BsaI	GGTCTC	2 cut(s)	745, 1802
Bse118I	RCCGGY	4 cut(s)	157, 339, 701, 842
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	3 cut(s)	2334, 3113, 5008
BseBI	CCWGG	4 cut(s)	381, 2766, 2781, 5032
BseMI	GCAATG	3 cut(s)	2334, 3113, 5008
BseRI	GAGGAG	7 cut(s)	418, 421, 559, 1237, 2885, 4022, 4749
BseSI	GKGCMC	3 cut(s)	301, 425, 3033
BseX3I	CGGCCG	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	3375
BsgI	GTGCAG	3 cut(s)	277, 2946, 4482
Bsh1236I	CGCG	4 cut(s)	134, 418, 670, 1148
Bsh1285I	CGRYCG	3 cut(s)	228, 232, 252
BshNI	GGYRCC	7 cut(s)	422, 516, 2330, 3028, 3672, 4089, 4317
BsiEI	CGRYCG	3 cut(s)	228, 232, 252
BsiHKAI	GWGCWC	4 cut(s)	881, 2877, 3139, 4278
BsiHKCI	CYCGRG	3 cut(s)	1395, 4260, 4551
BsiSI	CCGG	9 cut(s)	158, 340, 702, 737, 830, 843, 1001, 3526, 4750
BsmBI	CGTCTC	2 cut(s)	209, 1676
BsmI	GAATGC	1 cut(s)	3451
Bso31I	GGTCTC	2 cut(s)	745, 1802
BsoBI	CYCGRG	3 cut(s)	1395, 4260, 4551
Bsp119I	TTCGAA	2 cut(s)	976, 1196
Bsp1286I	GDGCHC	9 cut(s)	301, 425, 830, 881, 2877, 3033, 3139, 4278, 4836
Bsp1407I	TGTACA	1 cut(s)	2018
Bsp19I	CCATGG	1 cut(s)	3657
BspFNI	CGCG	4 cut(s)	134, 418, 670, 1148
BspHI	TCATGA	2 cut(s)	2052, 4387
BspMAI	CTGCAG	4 cut(s)	693, 1663, 2815, 4695
BspMI	ACCTGC	1 cut(s)	4636
BspPI	GGATC	5 cut(s)	1311, 2201, 3827, 4386, 4837
BspQI	GCTCTTC	1 cut(s)	4635
BspT104I	TTCGAA	2 cut(s)	976, 1196
BspT107I	GGYRCC	7 cut(s)	422, 516, 2330, 3028, 3672, 4089, 4317
BspTI	CTTAAG	1 cut(s)	4223
BspTNI	GGTCTC	2 cut(s)	745, 1802
BsrBI	CCGCTC	2 cut(s)	1059, 4323
BsrDI	GCAATG	3 cut(s)	2334, 3113, 5008
BsrFI	RCCGGY	4 cut(s)	157, 339, 701, 842
BsrGI	TGTACA	1 cut(s)	2018
BssAI	RCCGGY	4 cut(s)	157, 339, 701, 842
BssNAI	GTATAC	1 cut(s)	4820
BssNI	GRCGYC	2 cut(s)	1685, 3673
BssSI	CACGAG	1 cut(s)	3627
BssT1I	CCWWGG	2 cut(s)	2141, 3657
Bst1107I	GTATAC	1 cut(s)	4820
Bst2BI	CACGAG	1 cut(s)	3627
Bst2UI	CCWGG	4 cut(s)	381, 2766, 2781, 5032
Bst6I	CTCTTC	5 cut(s)	1310, 1515, 2781, 4128, 4635
BstACI	GRCGYC	2 cut(s)	1685, 3673
BstAFI	CTTAAG	1 cut(s)	4223
BstAPI	GCANNNNNTGC	2 cut(s)	3110, 4151
BstAUI	TGTACA	1 cut(s)	2018
BstBAI	YACGTR	2 cut(s)	2268, 4502
BstBI	TTCGAA	2 cut(s)	976, 1196
BstDSI	CCRYGG	4 cut(s)	132, 416, 1146, 3657
BstENI	CCTNNNNNAGG	2 cut(s)	1637, 2559
BstFNI	CGCG	4 cut(s)	134, 418, 670, 1148
BstH2I	RGCGCY	2 cut(s)	2395, 3676
BstHHI	GCGC	3 cut(s)	211, 2394, 3675
BstMCI	CGRYCG	3 cut(s)	228, 232, 252
BstNI	CCWGG	4 cut(s)	381, 2766, 2781, 5032
BstNSI	RCATGY	5 cut(s)	1018, 2749, 4129, 4757, 5012
BstPAI	GACNNNNGTC	1 cut(s)	2136
BstSCI	CCNGG	8 cut(s)	379, 735, 828, 1000, 2764, 2779, 4748, 5030
BstSLI	GKGCMC	3 cut(s)	301, 425, 3033
BstUI	CGCG	4 cut(s)	134, 418, 670, 1148
BstV2I	GAAGAC	3 cut(s)	51, 2001, 4376
BstX2I	RGATCY	5 cut(s)	1303, 2206, 3293, 3832, 4842
BstXI	CCANNNNNNTGG	1 cut(s)	3664
BstYI	RGATCY	5 cut(s)	1303, 2206, 3293, 3832, 4842
BstZ17I	GTATAC	1 cut(s)	4820
BstZI	CGGCCG	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	357
BsuI	GTATCC	3 cut(s)	919, 1708, 2771
BtgI	CCRYGG	4 cut(s)	132, 416, 1146, 3657
BtgZI	GCGATG	1 cut(s)	1475
BtsI	GCAGTG	3 cut(s)	1458, 1930, 3166
BveI	ACCTGC	1 cut(s)	4636
CaiI	CAGNNNCTG	4 cut(s)	376, 2210, 2666, 4151
CciI	TCATGA	2 cut(s)	2052, 4387
CfoI	GCGC	3 cut(s)	211, 2394, 3675
Cfr10I	RCCGGY	4 cut(s)	157, 339, 701, 842
Cfr42I	CCGCGG	3 cut(s)	135, 419, 1149
CseI	GACGC	2 cut(s)	820, 1606
Csp6I	GTAC	9 cut(s)	244, 313, 331, 385, 1158, 2019, 2715, 3945, 4586
CviQI	GTAC	9 cut(s)	244, 313, 331, 385, 1158, 2019, 2715, 3945, 4586
DinI	GGCGCC	1 cut(s)	3674
DraI	TTTAAA	1 cut(s)	3253
EaeI	YGGCCR	5 cut(s)	249, 729, 2855, 3654, 4950
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	5 cut(s)	1310, 1515, 2781, 4128, 4635
EarI	CTCTTC	5 cut(s)	1310, 1515, 2781, 4128, 4635
EciI	GGCGGA	2 cut(s)	152, 185
Ecl136II	GAGCTC	2 cut(s)	2875, 4276
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	2141, 3657
Eco147I	AGGCCT	2 cut(s)	2953, 4697
Eco24I	GRGCYC	4 cut(s)	830, 2877, 4278, 4836
Eco31I	GGTCTC	2 cut(s)	745, 1802
Eco47I	GGWCC	7 cut(s)	52, 97, 175, 268, 412, 1666, 5027
Eco52I	CGGCCG	1 cut(s)	249
Eco53kI	GAGCTC	2 cut(s)	2875, 4276
Eco57I	CTGAAG	8 cut(s)	1532, 1622, 2250, 3303, 3777, 4512, 4718, 4838
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	3 cut(s)	1395, 4260, 4551
EcoICRI	GAGCTC	2 cut(s)	2875, 4276
EcoNI	CCTNNNNNAGG	2 cut(s)	1637, 2559
EcoO109I	RGGNCCY	2 cut(s)	175, 1666
EcoRI	GAATTC	1 cut(s)	3912
EcoRII	CCWGG	4 cut(s)	379, 2764, 2779, 5030
EcoT14I	CCWWGG	2 cut(s)	2141, 3657
EcoT22I	ATGCAT	1 cut(s)	3453
EcoT38I	GRGCYC	4 cut(s)	830, 2877, 4278, 4836
EgeI	GGCGCC	1 cut(s)	3674
EheI	GGCGCC	1 cut(s)	3674
ErhI	CCWWGG	2 cut(s)	2141, 3657
Esp3I	CGTCTC	2 cut(s)	209, 1676
FauNDI	CATATG	2 cut(s)	1257, 2015
FbaI	TGATCA	5 cut(s)	624, 1615, 1708, 1909, 2185
FblI	GTMKAC	1 cut(s)	4819
FriOI	GRGCYC	4 cut(s)	830, 2877, 4278, 4836
GlaI	GCGC	3 cut(s)	210, 2393, 3674
GsaI	CCCAGC	1 cut(s)	3379
GsuI	CTGGAG	3 cut(s)	511, 2589, 4595
HaeII	RGCGCY	2 cut(s)	2395, 3676
HapII	CCGG	9 cut(s)	158, 340, 702, 737, 830, 843, 1001, 3526, 4750
HgaI	GACGC	2 cut(s)	820, 1606
HhaI	GCGC	3 cut(s)	211, 2394, 3675
Hin1I	GRCGYC	2 cut(s)	1685, 3673
Hin6I	GCGC	3 cut(s)	209, 2392, 3673
HinP1I	GCGC	3 cut(s)	209, 2392, 3673
HincII	GTYRAC	3 cut(s)	475, 2199, 3146
HindII	GTYRAC	3 cut(s)	475, 2199, 3146
HindIII	AAGCTT	3 cut(s)	2312, 2411, 3718
HpaII	CCGG	9 cut(s)	158, 340, 702, 737, 830, 843, 1001, 3526, 4750
Hpy166II	GTNNAC	9 cut(s)	84, 475, 765, 1507, 2199, 2893, 3146, 3761, 4820
Hpy8I	GTNNAC	9 cut(s)	84, 475, 765, 1507, 2199, 2893, 3146, 3761, 4820
HpyCH4IV	ACGT	7 cut(s)	477, 1685, 2267, 2947, 3608, 4429, 4501
HpySE526I	ACGT	7 cut(s)	477, 1685, 2267, 2947, 3608, 4429, 4501
Hsp92I	GRCGYC	2 cut(s)	1685, 3673
HspAI	GCGC	3 cut(s)	209, 2392, 3673
KasI	GGCGCC	1 cut(s)	3672
KroI	GCCGGC	2 cut(s)	701, 842
KroNI	GCCGGC	2 cut(s)	703, 844
Ksp22I	TGATCA	5 cut(s)	624, 1615, 1708, 1909, 2185
KspI	CCGCGG	3 cut(s)	135, 419, 1149
LguI	GCTCTTC	1 cut(s)	4635
MaeII	ACGT	7 cut(s)	477, 1685, 2267, 2947, 3608, 4429, 4501
MbiI	CCGCTC	2 cut(s)	1059, 4323
MfeI	CAATTG	1 cut(s)	4412
MflI	RGATCY	5 cut(s)	1303, 2206, 3293, 3832, 4842
MhlI	GDGCHC	9 cut(s)	301, 425, 830, 881, 2877, 3033, 3139, 4278, 4836
MlsI	TGGCCA	3 cut(s)	731, 2857, 3656
MluNI	TGGCCA	3 cut(s)	731, 2857, 3656
Mly113I	GGCGCC	1 cut(s)	3673
MmeI	TCCRAC	8 cut(s)	636, 1227, 2052, 2429, 3799, 4782, 4936, 5005
Mox20I	TGGCCA	3 cut(s)	731, 2857, 3656
Mph1103I	ATGCAT	1 cut(s)	3453
MreI	CGCCGGCG	1 cut(s)	842
MroNI	GCCGGC	2 cut(s)	701, 842
MroXI	GAANNNNTTC	4 cut(s)	2313, 3498, 3720, 4119
MscI	TGGCCA	3 cut(s)	731, 2857, 3656
MslI	CAYNNNNRTG	5 cut(s)	3265, 4124, 4917, 5001, 5013
Msp20I	TGGCCA	3 cut(s)	731, 2857, 3656
MspA1I	CMGCKG	8 cut(s)	134, 148, 418, 513, 1148, 2632, 3766, 4877
MspCI	CTTAAG	1 cut(s)	4223
MspI	CCGG	9 cut(s)	158, 340, 702, 737, 830, 843, 1001, 3526, 4750
MspR9I	CCNGG	8 cut(s)	381, 737, 830, 1002, 2766, 2781, 4750, 5032
MunI	CAATTG	1 cut(s)	4412
Mva1269I	GAATGC	1 cut(s)	3451
MvaI	CCWGG	4 cut(s)	381, 2766, 2781, 5032
MvnI	CGCG	4 cut(s)	134, 418, 670, 1148
NaeI	GCCGGC	2 cut(s)	703, 844
NarI	GGCGCC	1 cut(s)	3673
NciI	CCSGG	4 cut(s)	737, 830, 1002, 4750
NcoI	CCATGG	1 cut(s)	3657
NdeI	CATATG	2 cut(s)	1257, 2015
NgoMIV	GCCGGC	2 cut(s)	701, 842
NmeAIII	GCCGAG	3 cut(s)	104, 227, 1263
NsiI	ATGCAT	1 cut(s)	3453
NspI	RCATGY	5 cut(s)	1018, 2749, 4129, 4757, 5012
NspV	TTCGAA	2 cut(s)	976, 1196
PaeI	GCATGC	2 cut(s)	4129, 4757
PaeR7I	CTCGAG	2 cut(s)	4260, 4551
PagI	TCATGA	2 cut(s)	2052, 4387
PceI	AGGCCT	2 cut(s)	2953, 4697
PciSI	GCTCTTC	1 cut(s)	4635
PcsI	WCGNNNNNNNCGW	5 cut(s)	71, 74, 77, 483, 552
PctI	GAATGC	1 cut(s)	3451
PdiI	GCCGGC	2 cut(s)	703, 844
PdmI	GAANNNNTTC	4 cut(s)	2313, 3498, 3720, 4119
PflFI	GACNNNGTC	1 cut(s)	4810
PflMI	CCANNNNNTGG	2 cut(s)	409, 1470
Ple19I	CGATCG	1 cut(s)	232
PluTI	GGCGCC	1 cut(s)	3676
Ppu21I	YACGTR	2 cut(s)	2268, 4502
PpuMI	RGGWCCY	2 cut(s)	175, 1666
PshAI	GACNNNNGTC	1 cut(s)	2136
Psp124BI	GAGCTC	2 cut(s)	2877, 4278
Psp1406I	AACGTT	1 cut(s)	3608
Psp5II	RGGWCCY	2 cut(s)	175, 1666
Psp6I	CCWGG	4 cut(s)	379, 2764, 2779, 5030
PspFI	CCCAGC	1 cut(s)	3375
PspGI	CCWGG	4 cut(s)	379, 2764, 2779, 5030
PspPPI	RGGWCCY	2 cut(s)	175, 1666
PsrI	GAACNNNNNNTAC	2 cut(s)	2707, 2739
PstI	CTGCAG	4 cut(s)	693, 1663, 2815, 4695
PstNI	CAGNNNCTG	4 cut(s)	376, 2210, 2666, 4151
PsuI	RGATCY	5 cut(s)	1303, 2206, 3293, 3832, 4842
PsyI	GACNNNGTC	1 cut(s)	4810
PvuI	CGATCG	1 cut(s)	232
PvuII	CAGCTG	3 cut(s)	513, 3766, 4877
RsaI	GTAC	9 cut(s)	245, 314, 332, 386, 1159, 2020, 2716, 3946, 4587
RsaNI	GTAC	9 cut(s)	244, 313, 331, 385, 1158, 2019, 2715, 3945, 4586
RseI	CAYNNNNRTG	5 cut(s)	3265, 4124, 4917, 5001, 5013
SacI	GAGCTC	2 cut(s)	2877, 4278
SacII	CCGCGG	3 cut(s)	135, 419, 1149
SapI	GCTCTTC	1 cut(s)	4635
ScaI	AGTACT	3 cut(s)	245, 314, 3946
ScrFI	CCNGG	8 cut(s)	381, 737, 830, 1002, 2766, 2781, 4750, 5032
SduI	GDGCHC	9 cut(s)	301, 425, 830, 881, 2877, 3033, 3139, 4278, 4836
SfoI	GGCGCC	1 cut(s)	3674
Sfr274I	CTCGAG	2 cut(s)	4260, 4551
Sfr303I	CCGCGG	3 cut(s)	135, 419, 1149
SfuI	TTCGAA	2 cut(s)	976, 1196
SgrAI	CRCCGGYG	1 cut(s)	842
SgrBI	CCGCGG	3 cut(s)	135, 419, 1149
SinI	GGWCC	7 cut(s)	52, 97, 175, 268, 412, 1666, 5027
SlaI	CTCGAG	2 cut(s)	4260, 4551
SmiMI	CAYNNNNRTG	5 cut(s)	3265, 4124, 4917, 5001, 5013
SmlI	CTYRAG	5 cut(s)	4223, 4260, 4310, 4551, 4721
SmoI	CTYRAG	5 cut(s)	4223, 4260, 4310, 4551, 4721
SpeI	ACTAGT	2 cut(s)	1604, 3941
SphI	GCATGC	2 cut(s)	4129, 4757
SseBI	AGGCCT	2 cut(s)	2953, 4697
SspDI	GGCGCC	1 cut(s)	3672
SspI	AATATT	1 cut(s)	2127
SstI	GAGCTC	2 cut(s)	2877, 4278
StuI	AGGCCT	2 cut(s)	2953, 4697
StyD4I	CCNGG	8 cut(s)	379, 735, 828, 1000, 2764, 2779, 4748, 5030
StyI	CCWWGG	2 cut(s)	2141, 3657
TaiI	ACGT	7 cut(s)	480, 1688, 2270, 2950, 3611, 4432, 4504
TatI	WGTACW	4 cut(s)	243, 312, 2018, 3944
TauI	GCSGC	8 cut(s)	137, 148, 164, 167, 170, 204, 1217, 4937
TspGWI	ACGGA	9 cut(s)	110, 607, 646, 712, 1468, 2087, 2271, 2348, 4603
Tth111I	GACNNNGTC	1 cut(s)	4810
Van91I	CCANNNNNTGG	2 cut(s)	409, 1470
Vha464I	CTTAAG	1 cut(s)	4223
VpaK11BI	GGWCC	7 cut(s)	52, 97, 175, 268, 412, 1666, 5027
XagI	CCTNNNNNAGG	2 cut(s)	1637, 2559
XbaI	TCTAGA	2 cut(s)	3827, 3973
XceI	RCATGY	5 cut(s)	1018, 2749, 4129, 4757, 5012
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3583, 4952
XhoI	CTCGAG	2 cut(s)	4260, 4551
XmiI	GTMKAC	1 cut(s)	4819
XmnI	GAANNNNTTC	4 cut(s)	2313, 3498, 3720, 4119
ZraI	GACGTC	1 cut(s)	1686
ZrmI	AGTACT	3 cut(s)	245, 314, 3946
Zsp2I	ATGCAT	1 cut(s)	3453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.