Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000319.1

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Reverse (-)

51933 .. 59415

Gene Structure 7483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000319.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5082 bp

atgaagcaccagcagagcagctcatcgtcaccgtcgcagtcgtctgaggcggtcccgtcttcttcgtcgtcgtcgtccactgtgacgacggaccaatcacatcccgccacctcgaactcggcatccgcggcggagaagccgctgccaataccggcggcggcggcggaggaccttgcggtggggtcgagggacggcggcggggcgcaggagacggtgacggtcgatcggagaggggagtactcggccgtgtgcagatggacggtccagaattttccgagaatcaaagctagggcactttggagcaagtacttcgaggtgggagggtacgattgccggttgttaatataccctaagggtgactcacaggctctgcctgggtacatctccatctacctccaaatcatggacccgcggggcacctcctcctccaaatgggactgcttcgccagctaccgcctcgccatcgtcaacgtcgccgacgattccaagaccattcacagggacagctggcaccgcttctccagcaagaagaaatcacacggttggtgcgatttcaccccctcctctactgtttttgattccaagttaggttatcttttcaattccgactccgttttgatcaccgccgatattttgatattgaatgagtccgttcatttcacgcgagataataataacgagctgcagtcatctgccggctccatgatgtcatcttccgtcgtggccagcccggtctccgatgtgttgagtggcaagttcacttggaaggtgcataactttagcttgtttaaggatatgattaagacgcagaaggtaatgagcccggtgttccccgccggcgagtgtaatttgaggattagtgtttatcagagcactgtcaatgctgtagagtatttgtcaatgtgtttggagagcaaggatactgacaagacggttgtgttgtccgatagaagttgttggtgtttgtttcgaatgtctgtgttgaaccagaagccggggtctaatcacatgcacagggactcgtatgggaggtttgctgccgataataagagcggggataataccagcttgggctggaatgattatatgaagatgtcagatttcgttggcccagagtcggggtttttggcagatgataccgcggtgtttagtacctcatttcatgtgataaaggagtttagtagcttttcgaagaatgggggattggctgcagggaggagtggtagtggggcgaggaagttggatggacatatggggaaatttacttggaagattgaaaatttcacaaagttgaaggatctattaaagaagaggaagataacgggtctgtgcatcaagagcaggaggtttcagattgggaatcgggactgtcggctcattgtttatccccgagggcagtctcagcctccatgtcacctttcagtctttcttgaagttacagattcacggaacactgccagtgattggagttgttttgtgagtcatcgcttgtctgttgtgaacctgaagatggaagagaagtctgtcacaaaggagtctcagaaccgctactccaaagctgcaaaggactggggttggcgtgaatttgtgacgcttactagtctctttgatcaagattcagggttccttcttcaggacactgttgtattctctgcagaggtccttatattgaaagagacgtcaattatgcaggatttgattgatcaggataccgagtctgctacccagattgacaagaatgtaaaacgaagctcttttacatggaaggtggagaacttcctgtcttttaaggaaataatggagacccgaaaaatctttagcaaattctttcaagctggtggatgtgagcttcggattggggtatatgagtcctttgacaccatttgtatttatttggagagtgatcagtcagttggcagtgatctggacaaaaatttctgggtgcgatataggatggctgttgtgaatcaaaagaaccctgccaaaactgtgtggaaggagtcttccatatgtacaaagacttggaacaattctgttttgcaattcatgaaggtttcagatatgttggaggcagatgcagggtttcttgtccgtgataccgttgtttttgtatgtgaaatattggactgctgtccttggtttgagttttcagacctagaggtttttgcttccgaggatgatcaggatgcgttgacaacagatcctgatgaacttgttgattctgaagatagtgaaggaataggtggtgacgaagaagatatctttagaaacctactttccagagctggatttcacctcacgtatggagataatccgtcacagccacaggtcactttacgagaaaagcttctgatggatgcgggtgccattgctggtttcctgactggactccgtgtttatcttgatgaccctgctaaagtaaagcgcctgcttcttccaaccaagctttctggtagcagtgatggaatgaaggtcttaaagaatgatgaatcttctcctagtttgatgaatttactaatgggagtcaaagtgttgcagcaggctattattgatttacttttggacattatggttgagtgttgccaacctacagaagggagttgtaatggtgatttatctgatggaaactcaaaaactccagatggaagtgaagctgctagtccgctgcaatctgatagagaaaatggagcaacagaatctgtgcattgtcccgtgtatgagcgattggatgccagtgttgatgaaagtaccagtggttcggctgttcaaagttctgacatgcacggggttggtatcccagggaaaactcttcctgggcagccaatttaccccccagaaacatctgcaggggcatcagaaaatgtgtcccttcgttcaaagactaagtggccagagcaatctgaggagctcttaggattgattgtaaactcactgagagctttggatggagctgttccacaaggctgtcctgaaccaagacgtaggcctcagtctgcacaaaagatcgctcttgtactggataaagctcctaagcatttgcagcctgatctggtgtctttggtgcccaagttggttgaacattcagagcatccacttgctgcctttgcacttattgaacgattgcaaaagccagatgcagaacttgcattgcggacacgtgttttcggtgctctgagtcaactggactgtggcagtgaagtctgggaacgagttttatctcaatctttagagtttttggcagattcaaacgatgaacctcttgctgcaaccatagatttcatatttaaagctgcatcccagtgccaacacctacctgaagcagtcagatctgttcgtgttaggctaaagaatttgggtgtcgatgtttctccttgtgtccttgaattattgagtagaactataaatagctggggagatgttgctgaaaccatacttcgagatattgattgtgatgatgattttgatgatagttgctcgactatgcattctgggcttttcttgtttggagaacatggaccttgttcggaacggtttcatttggtggatgagcaggctttccggccttgtcgtcatttttctgatatttacatcttgattgagatgttatccataccttgtctggctgtagaagcctctcaaacgtttgagagagctgtagctcgtggtgctattgtggctcattctgtggccatggttttggaaaggcgccttgctcaaagattgaaccttgatgctagatttgttgcggaaagctttcagcagacagatttggttgtagagggagaagccagtgaacagctgagagtccaacaagacgattttacttcagttcttggtcttgctgaaacattggccctctctagagatccttgtgttaagggatttgtgaagatgctctacacattattgttcaaatggtatgctgatgagtcttatcgagggagaattctaaagagacttgttgatcgtgccactagtactacagatagtagtcgtgaaattgatctagattttgatatattggtaacactagcttctgaggagcaggaaattgttagaccagttttgagtattgtgcgggaggttgctgaacttgcaaatgtcgatcgggcagctctttggcaccagttatgtgctagtgaagatgaaatcattcgcatgcgggaagagaggaaagcagaaactgctaacatggctagagaaaaagctgttatattgcaaaaactgagtgaatccgaggccactaacaaccgtcttaagtctgaaatgaaggctgagaatgaccgctttactcgagaaaagaaggagctctcggaacgaatacaagaagttgagagtcagcttgagtggcaccgctcagagcgagatgatgaaattagaaagctcactacagataggaaagtgtttcaggatcgtcttcatgatgcagagacacaactctctcaattgaagtcccgaaaacgtgatgaattgaagaaagttgtgaaggagaaaaatgctctagctgaaaggttgaagggtgctgaagctgcacgtaaaagatttgatgaagaacttaaacggtatgccacagagaaggtgactcgagaggaaattcgacaatctctggaggatgaagtacggagactgacacaaacagtaggacaaacagaaggagagaaacgagagaaggaagagcaggttgctcggtgtgaagcctatattgatgggatggaatcaaaactgcaggcctgccagcaatatattcatacccttgaggcttcacttcaggaagaaatgtcccggcatgctcctctgtatggtgctggtttggaggcattatcaatgaaggagttggagacactgtcccgtatccatgaagaagggctcaggcagatccatacccttcagcagcgtaagggtagtccagctggcagtccccttgtaagcccgcacacgctcccacacaatcatgggctatatcctgccgcacccccccaaatgcccgttggagtgcctccttcactcattccaaacggtgttgggattcacagcaatgggcatgtgaatggtgctgttggaccctggttcaaccattcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

1693

Amino Acids

189.1

Weight (kDa)

5.46

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1682
Acc36I	ACCTGC	1 cut(s)	4669
AccB1I	GGYRCC	7 cut(s)	416, 510, 2363, 3061, 3705, 4122, 4350
AccB7I	CCANNNNNTGG	2 cut(s)	403, 1464
AccBSI	CCGCTC	2 cut(s)	1053, 4356
AccII	CGCG	4 cut(s)	128, 412, 664, 1142
AclI	AACGTT	1 cut(s)	3641
AclWI	GGATC	5 cut(s)	1305, 2195, 3860, 4419, 4870
AcoI	YGGCCR	4 cut(s)	243, 723, 2888, 3687
AcuI	CTGAAG	8 cut(s)	1526, 1616, 2244, 3336, 3810, 4545, 4751, 4871
AcvI	CACGTG	1 cut(s)	3158
AcyI	GRCGYC	2 cut(s)	1679, 3706
AflII	CTTAAG	1 cut(s)	4256
AflIII	ACRYGT	2 cut(s)	3155, 3157
AhlI	ACTAGT	2 cut(s)	1598, 3974
AjnI	CCWGG	4 cut(s)	373, 2797, 2812, 5063
AjuI	GAANNNNNNNTTGG	4 cut(s)	1187, 1219, 2431, 2463
AloI	GAACNNNNNNTCC	4 cut(s)	107, 139, 1535, 1567
Alw21I	GWGCWC	4 cut(s)	875, 2910, 3172, 4311
AlwI	GGATC	5 cut(s)	1305, 2195, 3860, 4419, 4870
AlwNI	CAGNNNCTG	4 cut(s)	370, 2204, 2699, 4184
Ama87I	CYCGRG	3 cut(s)	1389, 4293, 4584
Asp700I	GAANNNNTTC	4 cut(s)	2346, 3531, 3753, 4152
AspLEI	GCGC	3 cut(s)	205, 2427, 3708
AsuC2I	CCSGG	4 cut(s)	731, 824, 996, 4783
AsuII	TTCGAA	2 cut(s)	970, 1190
AvaI	CYCGRG	3 cut(s)	1389, 4293, 4584
AvaII	GGWCC	8 cut(s)	52, 91, 169, 262, 406, 1660, 3515, 5060
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	3 cut(s)	295, 419, 3066
BaeI	ACNNNNGTAYC	4 cut(s)	1128, 1161, 2088, 2121
BalI	TGGCCA	3 cut(s)	725, 2890, 3689
BanI	GGYRCC	7 cut(s)	416, 510, 2363, 3061, 3705, 4122, 4350
BanII	GRGCYC	4 cut(s)	824, 2910, 4311, 4869
BarI	GAAGNNNNNNTAC	4 cut(s)	1741, 1773, 3881, 3913
BauI	CACGAG	1 cut(s)	3660
BbrPI	CACGTG	1 cut(s)	3158
BbsI	GAAGAC	3 cut(s)	51, 1995, 4409
Bbv12I	GWGCWC	4 cut(s)	875, 2910, 3172, 4311
BceAI	ACGGC	2 cut(s)	208, 230
BcgI	CGANNNNNNTGC	4 cut(s)	292, 326, 4667, 4701
BciT130I	CCWGG	4 cut(s)	375, 2799, 2814, 5065
BciVI	GTATCC	4 cut(s)	913, 1702, 2804, 4862
BclI	TGATCA	5 cut(s)	618, 1609, 1702, 1903, 2179
BcnI	CCSGG	4 cut(s)	731, 824, 996, 4783
BcuI	ACTAGT	2 cut(s)	1598, 3974
BfoI	RGCGCY	2 cut(s)	2428, 3709
BfrI	CTTAAG	1 cut(s)	4256
BfuAI	ACCTGC	1 cut(s)	4669
BfuI	GTATCC	4 cut(s)	913, 1702, 2804, 4862
BglII	AGATCT	1 cut(s)	3326
BmcAI	AGTACT	3 cut(s)	239, 308, 3979
Bme1390I	CCNGG	8 cut(s)	375, 731, 824, 996, 2799, 2814, 4783, 5065
Bme18I	GGWCC	8 cut(s)	52, 91, 169, 262, 406, 1660, 3515, 5060
BmeT110I	CYCGRG	3 cut(s)	1389, 4293, 4584
BmrFI	CCNGG	8 cut(s)	375, 731, 824, 996, 2799, 2814, 4783, 5065
BmrI	ACTGGG	2 cut(s)	1579, 3292
BmuI	ACTGGG	2 cut(s)	1579, 3292
BoxI	GACNNNNGTC	1 cut(s)	2130
BpiI	GAAGAC	3 cut(s)	51, 1995, 4409
BpmI	CTGGAG	3 cut(s)	505, 2622, 4628
Bpu10I	CCTNAGC	2 cut(s)	3030, 4868
Bpu14I	TTCGAA	2 cut(s)	970, 1190
BpuEI	CTTGAG	2 cut(s)	4364, 4775
BpuMI	CCSGG	4 cut(s)	731, 824, 996, 4783
BsaAI	YACGTR	3 cut(s)	2301, 3158, 4535
BsaHI	GRCGYC	2 cut(s)	1679, 3706
BsaI	GGTCTC	2 cut(s)	739, 1796
Bse118I	RCCGGY	4 cut(s)	151, 333, 695, 836
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	3 cut(s)	2367, 3146, 5041
BseBI	CCWGG	4 cut(s)	375, 2799, 2814, 5065
BseMI	GCAATG	3 cut(s)	2367, 3146, 5041
BseRI	GAGGAG	7 cut(s)	412, 415, 553, 1231, 2918, 4055, 4782
BseSI	GKGCMC	3 cut(s)	295, 419, 3066
BseX3I	CGGCCG	1 cut(s)	243
BseYI	CCCAGC	1 cut(s)	3408
BsgI	GTGCAG	3 cut(s)	271, 2979, 4515
Bsh1236I	CGCG	4 cut(s)	128, 412, 664, 1142
Bsh1285I	CGRYCG	4 cut(s)	222, 226, 246, 4108
BshNI	GGYRCC	7 cut(s)	416, 510, 2363, 3061, 3705, 4122, 4350
BsiEI	CGRYCG	4 cut(s)	222, 226, 246, 4108
BsiHKAI	GWGCWC	4 cut(s)	875, 2910, 3172, 4311
BsiHKCI	CYCGRG	3 cut(s)	1389, 4293, 4584
BsiSI	CCGG	9 cut(s)	152, 334, 696, 731, 824, 837, 995, 3559, 4783
BsmBI	CGTCTC	2 cut(s)	203, 1670
BsmI	GAATGC	1 cut(s)	3484
Bso31I	GGTCTC	2 cut(s)	739, 1796
BsoBI	CYCGRG	3 cut(s)	1389, 4293, 4584
Bsp119I	TTCGAA	2 cut(s)	970, 1190
Bsp1286I	GDGCHC	9 cut(s)	295, 419, 824, 875, 2910, 3066, 3172, 4311, 4869
Bsp1407I	TGTACA	1 cut(s)	2012
Bsp19I	CCATGG	1 cut(s)	3690
BspFNI	CGCG	4 cut(s)	128, 412, 664, 1142
BspHI	TCATGA	2 cut(s)	2046, 4420
BspMAI	CTGCAG	5 cut(s)	687, 1213, 1657, 2848, 4728
BspMI	ACCTGC	1 cut(s)	4669
BspPI	GGATC	5 cut(s)	1305, 2195, 3860, 4419, 4870
BspQI	GCTCTTC	1 cut(s)	4668
BspT104I	TTCGAA	2 cut(s)	970, 1190
BspT107I	GGYRCC	7 cut(s)	416, 510, 2363, 3061, 3705, 4122, 4350
BspTI	CTTAAG	1 cut(s)	4256
BspTNI	GGTCTC	2 cut(s)	739, 1796
BsrBI	CCGCTC	2 cut(s)	1053, 4356
BsrDI	GCAATG	3 cut(s)	2367, 3146, 5041
BsrFI	RCCGGY	4 cut(s)	151, 333, 695, 836
BsrGI	TGTACA	1 cut(s)	2012
BssAI	RCCGGY	4 cut(s)	151, 333, 695, 836
BssNI	GRCGYC	2 cut(s)	1679, 3706
BssSI	CACGAG	1 cut(s)	3660
BssT1I	CCWWGG	2 cut(s)	2135, 3690
Bst2BI	CACGAG	1 cut(s)	3660
Bst2UI	CCWGG	4 cut(s)	375, 2799, 2814, 5065
Bst6I	CTCTTC	5 cut(s)	1304, 1509, 2814, 4161, 4668
BstACI	GRCGYC	2 cut(s)	1679, 3706
BstAFI	CTTAAG	1 cut(s)	4256
BstAPI	GCANNNNNTGC	2 cut(s)	3143, 4184
BstAUI	TGTACA	1 cut(s)	2012
BstBAI	YACGTR	3 cut(s)	2301, 3158, 4535
BstBI	TTCGAA	2 cut(s)	970, 1190
BstDSI	CCRYGG	4 cut(s)	126, 410, 1140, 3690
BstENI	CCTNNNNNAGG	2 cut(s)	1631, 2592
BstFNI	CGCG	4 cut(s)	128, 412, 664, 1142
BstH2I	RGCGCY	2 cut(s)	2428, 3709
BstHHI	GCGC	3 cut(s)	205, 2427, 3708
BstMCI	CGRYCG	4 cut(s)	222, 226, 246, 4108
BstNI	CCWGG	4 cut(s)	375, 2799, 2814, 5065
BstNSI	RCATGY	5 cut(s)	1012, 2782, 4162, 4790, 5045
BstPAI	GACNNNNGTC	1 cut(s)	2130
BstSCI	CCNGG	8 cut(s)	373, 729, 822, 994, 2797, 2812, 4781, 5063
BstSLI	GKGCMC	3 cut(s)	295, 419, 3066
BstUI	CGCG	4 cut(s)	128, 412, 664, 1142
BstV2I	GAAGAC	3 cut(s)	51, 1995, 4409
BstX2I	RGATCY	5 cut(s)	1297, 2200, 3326, 3865, 4875
BstXI	CCANNNNNNTGG	1 cut(s)	3697
BstYI	RGATCY	5 cut(s)	1297, 2200, 3326, 3865, 4875
BstZI	CGGCCG	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	4 cut(s)	913, 1702, 2804, 4862
BtgI	CCRYGG	4 cut(s)	126, 410, 1140, 3690
BtgZI	GCGATG	1 cut(s)	1469
BtsI	GCAGTG	4 cut(s)	1452, 1924, 2464, 3199
BveI	ACCTGC	1 cut(s)	4669
CaiI	CAGNNNCTG	4 cut(s)	370, 2204, 2699, 4184
CciI	TCATGA	2 cut(s)	2046, 4420
CfoI	GCGC	3 cut(s)	205, 2427, 3708
Cfr10I	RCCGGY	4 cut(s)	151, 333, 695, 836
Cfr42I	CCGCGG	3 cut(s)	129, 413, 1143
CseI	GACGC	2 cut(s)	814, 1600
DinI	GGCGCC	1 cut(s)	3707
DraI	TTTAAA	1 cut(s)	3286
EaeI	YGGCCR	4 cut(s)	243, 723, 2888, 3687
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	5 cut(s)	1304, 1509, 2814, 4161, 4668
EarI	CTCTTC	5 cut(s)	1304, 1509, 2814, 4161, 4668
EciI	GGCGGA	2 cut(s)	146, 179
Ecl136II	GAGCTC	2 cut(s)	2908, 4309
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	2135, 3690
Eco147I	AGGCCT	2 cut(s)	2986, 4730
Eco24I	GRGCYC	4 cut(s)	824, 2910, 4311, 4869
Eco31I	GGTCTC	2 cut(s)	739, 1796
Eco32I	GATATC	1 cut(s)	2260
Eco47I	GGWCC	8 cut(s)	52, 91, 169, 262, 406, 1660, 3515, 5060
Eco52I	CGGCCG	1 cut(s)	243
Eco53kI	GAGCTC	2 cut(s)	2908, 4309
Eco57I	CTGAAG	8 cut(s)	1526, 1616, 2244, 3336, 3810, 4545, 4751, 4871
Eco72I	CACGTG	1 cut(s)	3158
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	3 cut(s)	1389, 4293, 4584
EcoICRI	GAGCTC	2 cut(s)	2908, 4309
EcoNI	CCTNNNNNAGG	2 cut(s)	1631, 2592
EcoO109I	RGGNCCY	2 cut(s)	169, 1660
EcoRI	GAATTC	1 cut(s)	3945
EcoRII	CCWGG	4 cut(s)	373, 2797, 2812, 5063
EcoRV	GATATC	1 cut(s)	2260
EcoT14I	CCWWGG	2 cut(s)	2135, 3690
EcoT22I	ATGCAT	1 cut(s)	3486
EcoT38I	GRGCYC	4 cut(s)	824, 2910, 4311, 4869
EgeI	GGCGCC	1 cut(s)	3707
EheI	GGCGCC	1 cut(s)	3707
ErhI	CCWWGG	2 cut(s)	2135, 3690
Esp3I	CGTCTC	2 cut(s)	203, 1670
FauNDI	CATATG	2 cut(s)	1251, 2009
FbaI	TGATCA	5 cut(s)	618, 1609, 1702, 1903, 2179
FriOI	GRGCYC	4 cut(s)	824, 2910, 4311, 4869
GlaI	GCGC	3 cut(s)	204, 2426, 3707
GsaI	CCCAGC	1 cut(s)	3412
GsuI	CTGGAG	3 cut(s)	505, 2622, 4628
HaeII	RGCGCY	2 cut(s)	2428, 3709
HapII	CCGG	9 cut(s)	152, 334, 696, 731, 824, 837, 995, 3559, 4783
HgaI	GACGC	2 cut(s)	814, 1600
HhaI	GCGC	3 cut(s)	205, 2427, 3708
Hin1I	GRCGYC	2 cut(s)	1679, 3706
Hin6I	GCGC	3 cut(s)	203, 2425, 3706
HinP1I	GCGC	3 cut(s)	203, 2425, 3706
HincII	GTYRAC	3 cut(s)	469, 2193, 3179
HindII	GTYRAC	3 cut(s)	469, 2193, 3179
HindIII	AAGCTT	3 cut(s)	2345, 2444, 3751
HpaII	CCGG	9 cut(s)	152, 334, 696, 731, 824, 837, 995, 3559, 4783
Hpy166II	GTNNAC	8 cut(s)	78, 469, 759, 1501, 2193, 2926, 3179, 3794
Hpy8I	GTNNAC	8 cut(s)	78, 469, 759, 1501, 2193, 2926, 3179, 3794
Hpy99I	CGWCG	8 cut(s)	37, 70, 73, 76, 91, 476, 482, 722
HpyCH4IV	ACGT	8 cut(s)	471, 1679, 2300, 2980, 3157, 3641, 4462, 4534
HpySE526I	ACGT	8 cut(s)	471, 1679, 2300, 2980, 3157, 3641, 4462, 4534
Hsp92I	GRCGYC	2 cut(s)	1679, 3706
HspAI	GCGC	3 cut(s)	203, 2425, 3706
KasI	GGCGCC	1 cut(s)	3705
KroI	GCCGGC	2 cut(s)	695, 836
KroNI	GCCGGC	2 cut(s)	697, 838
Ksp22I	TGATCA	5 cut(s)	618, 1609, 1702, 1903, 2179
KspI	CCGCGG	3 cut(s)	129, 413, 1143
LguI	GCTCTTC	1 cut(s)	4668
MaeII	ACGT	8 cut(s)	471, 1679, 2300, 2980, 3157, 3641, 4462, 4534
MbiI	CCGCTC	2 cut(s)	1053, 4356
MfeI	CAATTG	1 cut(s)	4445
MflI	RGATCY	5 cut(s)	1297, 2200, 3326, 3865, 4875
MhlI	GDGCHC	9 cut(s)	295, 419, 824, 875, 2910, 3066, 3172, 4311, 4869
MlsI	TGGCCA	3 cut(s)	725, 2890, 3689
MluNI	TGGCCA	3 cut(s)	725, 2890, 3689
Mly113I	GGCGCC	1 cut(s)	3706
MmeI	TCCRAC	8 cut(s)	630, 1221, 2046, 2462, 3832, 4815, 4969, 5038
Mox20I	TGGCCA	3 cut(s)	725, 2890, 3689
Mph1103I	ATGCAT	1 cut(s)	3486
MreI	CGCCGGCG	1 cut(s)	836
MroNI	GCCGGC	2 cut(s)	695, 836
MroXI	GAANNNNTTC	4 cut(s)	2346, 3531, 3753, 4152
MscI	TGGCCA	3 cut(s)	725, 2890, 3689
MslI	CAYNNNNRTG	5 cut(s)	3298, 4157, 4950, 5034, 5046
Msp20I	TGGCCA	3 cut(s)	725, 2890, 3689
MspA1I	CMGCKG	8 cut(s)	128, 142, 412, 507, 1142, 2665, 3799, 4910
MspCI	CTTAAG	1 cut(s)	4256
MspI	CCGG	9 cut(s)	152, 334, 696, 731, 824, 837, 995, 3559, 4783
MspR9I	CCNGG	8 cut(s)	375, 731, 824, 996, 2799, 2814, 4783, 5065
MunI	CAATTG	1 cut(s)	4445
Mva1269I	GAATGC	1 cut(s)	3484
MvaI	CCWGG	4 cut(s)	375, 2799, 2814, 5065
MvnI	CGCG	4 cut(s)	128, 412, 664, 1142
NaeI	GCCGGC	2 cut(s)	697, 838
NarI	GGCGCC	1 cut(s)	3706
NciI	CCSGG	4 cut(s)	731, 824, 996, 4783
NcoI	CCATGG	1 cut(s)	3690
NdeI	CATATG	2 cut(s)	1251, 2009
NgoMIV	GCCGGC	2 cut(s)	695, 836
NmeAIII	GCCGAG	2 cut(s)	98, 221
NsiI	ATGCAT	1 cut(s)	3486
NspI	RCATGY	5 cut(s)	1012, 2782, 4162, 4790, 5045
NspV	TTCGAA	2 cut(s)	970, 1190
PaeI	GCATGC	2 cut(s)	4162, 4790
PaeR7I	CTCGAG	2 cut(s)	4293, 4584
PagI	TCATGA	2 cut(s)	2046, 4420
PasI	CCCWGGG	1 cut(s)	2798
PceI	AGGCCT	2 cut(s)	2986, 4730
PciSI	GCTCTTC	1 cut(s)	4668
PcsI	WCGNNNNNNNCGW	3 cut(s)	71, 477, 546
PctI	GAATGC	1 cut(s)	3484
PdiI	GCCGGC	2 cut(s)	697, 838
PdmI	GAANNNNTTC	4 cut(s)	2346, 3531, 3753, 4152
PflFI	GACNNNGTC	1 cut(s)	4843
PflMI	CCANNNNNTGG	2 cut(s)	403, 1464
Ple19I	CGATCG	2 cut(s)	226, 4108
PluTI	GGCGCC	1 cut(s)	3709
PmaCI	CACGTG	1 cut(s)	3158
PmlI	CACGTG	1 cut(s)	3158
Ppu21I	YACGTR	3 cut(s)	2301, 3158, 4535
PpuMI	RGGWCCY	2 cut(s)	169, 1660
PshAI	GACNNNNGTC	1 cut(s)	2130
Psp124BI	GAGCTC	2 cut(s)	2910, 4311
Psp1406I	AACGTT	1 cut(s)	3641
Psp5II	RGGWCCY	2 cut(s)	169, 1660
Psp6I	CCWGG	4 cut(s)	373, 2797, 2812, 5063
PspCI	CACGTG	1 cut(s)	3158
PspFI	CCCAGC	1 cut(s)	3408
PspGI	CCWGG	4 cut(s)	373, 2797, 2812, 5063
PspPPI	RGGWCCY	2 cut(s)	169, 1660
PsrI	GAACNNNNNNTAC	2 cut(s)	2740, 2772
PstI	CTGCAG	5 cut(s)	687, 1213, 1657, 2848, 4728
PstNI	CAGNNNCTG	4 cut(s)	370, 2204, 2699, 4184
PsuI	RGATCY	5 cut(s)	1297, 2200, 3326, 3865, 4875
PsyI	GACNNNGTC	1 cut(s)	4843
PvuI	CGATCG	2 cut(s)	226, 4108
PvuII	CAGCTG	3 cut(s)	507, 3799, 4910
RseI	CAYNNNNRTG	5 cut(s)	3298, 4157, 4950, 5034, 5046
SacI	GAGCTC	2 cut(s)	2910, 4311
SacII	CCGCGG	3 cut(s)	129, 413, 1143
SapI	GCTCTTC	1 cut(s)	4668
ScaI	AGTACT	3 cut(s)	239, 308, 3979
ScrFI	CCNGG	8 cut(s)	375, 731, 824, 996, 2799, 2814, 4783, 5065
SduI	GDGCHC	9 cut(s)	295, 419, 824, 875, 2910, 3066, 3172, 4311, 4869
SfoI	GGCGCC	1 cut(s)	3707
Sfr274I	CTCGAG	2 cut(s)	4293, 4584
Sfr303I	CCGCGG	3 cut(s)	129, 413, 1143
SfuI	TTCGAA	2 cut(s)	970, 1190
SgrAI	CRCCGGYG	1 cut(s)	836
SgrBI	CCGCGG	3 cut(s)	129, 413, 1143
SinI	GGWCC	8 cut(s)	52, 91, 169, 262, 406, 1660, 3515, 5060
SlaI	CTCGAG	2 cut(s)	4293, 4584
SmiMI	CAYNNNNRTG	5 cut(s)	3298, 4157, 4950, 5034, 5046
SmlI	CTYRAG	5 cut(s)	4256, 4293, 4343, 4584, 4754
SmoI	CTYRAG	5 cut(s)	4256, 4293, 4343, 4584, 4754
SpeI	ACTAGT	2 cut(s)	1598, 3974
SphI	GCATGC	2 cut(s)	4162, 4790
SseBI	AGGCCT	2 cut(s)	2986, 4730
SspDI	GGCGCC	1 cut(s)	3705
SspI	AATATT	1 cut(s)	2121
SstI	GAGCTC	2 cut(s)	2910, 4311
StuI	AGGCCT	2 cut(s)	2986, 4730
StyD4I	CCNGG	8 cut(s)	373, 729, 822, 994, 2797, 2812, 4781, 5063
StyI	CCWWGG	2 cut(s)	2135, 3690
TaiI	ACGT	8 cut(s)	474, 1682, 2303, 2983, 3160, 3644, 4465, 4537
TatI	WGTACW	5 cut(s)	237, 306, 2012, 3013, 3977
TauI	GCSGC	7 cut(s)	131, 142, 158, 161, 164, 198, 4970
TspGWI	ACGGA	9 cut(s)	104, 601, 640, 706, 1462, 2081, 2304, 2381, 4636
Tth111I	GACNNNGTC	1 cut(s)	4843
Van91I	CCANNNNNTGG	2 cut(s)	403, 1464
Vha464I	CTTAAG	1 cut(s)	4256
VpaK11BI	GGWCC	8 cut(s)	52, 91, 169, 262, 406, 1660, 3515, 5060
XagI	CCTNNNNNAGG	2 cut(s)	1631, 2592
XbaI	TCTAGA	2 cut(s)	3860, 4006
XceI	RCATGY	5 cut(s)	1012, 2782, 4162, 4790, 5045
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3616, 4985
XhoI	CTCGAG	2 cut(s)	4293, 4584
XmnI	GAANNNNTTC	4 cut(s)	2346, 3531, 3753, 4152
ZraI	GACGTC	1 cut(s)	1680
ZrmI	AGTACT	3 cut(s)	239, 308, 3979
Zsp2I	ATGCAT	1 cut(s)	3486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.