Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Forward (+)

42159290 .. 42160485

Gene Structure 1196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0274500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTGGAAGCATGTATAGACTTGACTGAGCTTAGGTTGATTGGGTTTAGTTGGGTTCAATTAGCTCGTAGGAAGATACCTATAATAAAAAGTACCTGGAGGGCAGTCACAGCCGAGGAGAAAGAGAAAATTTGGCAACGTGTGCAGGTGACATTTGTGCTTGAACCTGAAAGCCGAAAAATGGTAATTGAATCTACTGCATCAAAATGGAGGGAATTCAAGTCTCGACTCACTAGGAATTACATTATCCCTTTCCTGAATGATCCAGAGTCCTTAAAGTATCCTCCAGATGATTACAGATTCATCAATGCAGATCATTGGACTGCATTTGTGGCTGAACGGACAAAGGAAAAGTTTCTTGAATTACGTCTGATCCAACAAGAGCGGCGCTCTAGGAACAAATATCCACACCGAATGTCCCGTAAGGGATATGCTGGATTGGAGGAAGAGTTGTCTGAATCAGTGGACAGCGACGAAGTTGATAGGGCAACATTGTGGATTAAAGGACGGCAGACCAAGCAGGGCACATTCAAGGATGAAGAGACAAAGAAGTGTGCTGAAAAAATTGTTACCTTGAAGGAGAAGGTTGCTACTGGAGAACTAAACACTTGTGGAAGTGATGATGTATTGACGTTGTCTTTGGGGACTCCTGAGCATCCTGGAAGAGTGCGAGGCGTGGGAGGCTATGTGAATCCCTCGTATTACTTCCATCTCCCTAAACGTAGAAAGGAGTCCATCCAAGAAACGGTTAGAGTGAGTGTGCAGAAAATTCTACAAGAGGAAAAAGAAAACATCATTGAAGAGGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

270

Amino Acids

31.58

Weight (kDa)

8.94

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	103 - 231	7.1e-12	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	385
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	257, 367
AcsI	RAATTY	3 cut(s)	129, 215, 768
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	181, 745
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	8 cut(s)	59, 164, 191, 220, 362, 532, 577, 800
AjnI	CCWGG	2 cut(s)	95, 658
AluBI	AGCT	2 cut(s)	31, 65
AluI	AGCT	2 cut(s)	31, 65
Alw26I	GTCTC	2 cut(s)	228, 536
AlwI	GGATC	2 cut(s)	257, 367
ApoI	RAATTY	3 cut(s)	129, 215, 768
ArsI	GACNNNNNNTTYG	2 cut(s)	622, 654
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	527
BccI	CCATC	2 cut(s)	717, 743
BceAI	ACGGC	1 cut(s)	524
BciT130I	CCWGG	2 cut(s)	97, 660
BciVI	GTATCC	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	228, 536
BfaI	CTAG	2 cut(s)	234, 393
BfoI	RGCGCY	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	291
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	97, 660
BmrFI	CCNGG	2 cut(s)	97, 660
BmsI	GCATC	2 cut(s)	209, 664
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpmI	CTGGAG	3 cut(s)	118, 270, 615
Bpu10I	CCTNAGC	2 cut(s)	32, 651
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 672, 702
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 745
Bse1I	ACTGG	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	97, 660
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	3 cut(s)	541, 655, 735
BseLI	CCNNNNNNNGG	2 cut(s)	181, 745
BseMII	CTCAG	2 cut(s)	18, 642
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	527
BsgI	GTGCAG	2 cut(s)	164, 782
BslFI	GGGAC	2 cut(s)	403, 658
BslI	CCNNNNNNNGG	2 cut(s)	181, 745
BsmAI	GTCTC	2 cut(s)	228, 536
BsmFI	GGGAC	2 cut(s)	403, 658
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	262, 313, 372
BspACI	CCGC	1 cut(s)	385
BspCNI	CTCAG	2 cut(s)	19, 643
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	257, 367
BsrBI	CCGCTC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	3 cut(s)	262, 313, 372
Bst2UI	CCWGG	2 cut(s)	97, 660
Bst4CI	ACNGT	1 cut(s)	748
Bst6I	CTCTTC	4 cut(s)	441, 534, 658, 795
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	27, 32, 651
BstF5I	GGATG	3 cut(s)	541, 655, 735
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	265, 316, 375
BstMAI	GTCTC	2 cut(s)	228, 536
BstMBI	GATC	3 cut(s)	262, 313, 372
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 142, 332, 517, 681
BstNI	CCWGG	2 cut(s)	97, 660
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	95, 658
BstSLI	GKGCMC	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	541, 655, 735
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	2 cut(s)	12, 810
CviJI	RGCY	7 cut(s)	31, 65, 113, 174, 335, 684, 806
CviKI_1	RGCY	7 cut(s)	31, 65, 113, 174, 335, 684, 806
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	3 cut(s)	27, 32, 651
DpnI	GATC	3 cut(s)	264, 315, 374
DpnII	GATC	3 cut(s)	262, 313, 372
Eam1104I	CTCTTC	4 cut(s)	441, 534, 658, 795
EarI	CTCTTC	4 cut(s)	441, 534, 658, 795
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	95, 658
FaeI	CATG	2 cut(s)	15, 813
FaiI	YATR	6 cut(s)	13, 17, 83, 432, 687, 811
FaqI	GGGAC	2 cut(s)	403, 658
FatI	CATG	2 cut(s)	11, 809
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	3 cut(s)	548, 642, 722
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	2 cut(s)	234, 393
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	3 cut(s)	118, 270, 615
HaeII	RGCGCY	1 cut(s)	391
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	15, 813
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	8 cut(s)	191, 228, 269, 300, 458, 646, 691, 731
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	372, 457
Hpy188III	TCNNGA	6 cut(s)	225, 256, 266, 287, 359, 650
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	571, 577
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4IV	ACGT	4 cut(s)	139, 367, 632, 721
HpyCH4V	TGCA	5 cut(s)	145, 200, 311, 326, 763
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 142, 332, 517, 681
HpyF3I	CTNAG	3 cut(s)	27, 32, 651
HpySE526I	ACGT	4 cut(s)	139, 367, 632, 721
Hsp92II	CATG	2 cut(s)	15, 813
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	262, 313, 372
LweI	GCATC	2 cut(s)	209, 664
MaeI	CTAG	2 cut(s)	234, 393
MaeII	ACGT	4 cut(s)	139, 367, 632, 721
MaeIII	GTNAC	3 cut(s)	106, 148, 568
MalI	GATC	3 cut(s)	264, 315, 374
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	3 cut(s)	262, 313, 372
MboII	GAAGA	5 cut(s)	85, 458, 551, 675, 812
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	8 cut(s)	59, 129, 186, 215, 238, 362, 564, 768
MlyI	GAGTC	4 cut(s)	222, 278, 640, 740
MmeI	TCCRAC	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	2 cut(s)	275, 501
MslI	CAYNNNNRTG	1 cut(s)	205
MspR9I	CCNGG	2 cut(s)	97, 660
MvaI	CCWGG	2 cut(s)	97, 660
MwoI	GCNNNNNNNGC	5 cut(s)	110, 142, 332, 517, 681
NdeII	GATC	3 cut(s)	262, 313, 372
NlaIII	CATG	2 cut(s)	15, 813
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	106, 148
NspI	RCATGY	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	191, 300, 458, 691
PflFI	GACNNNGTC	1 cut(s)	634
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	4 cut(s)	222, 277, 640, 739
PpsI	GAGTC	4 cut(s)	222, 277, 640, 739
Psp6I	CCWGG	2 cut(s)	95, 658
PspGI	CCWGG	2 cut(s)	95, 658
PsyI	GACNNNGTC	1 cut(s)	634
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	275, 501
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	3 cut(s)	262, 313, 372
SchI	GAGTC	4 cut(s)	222, 278, 640, 740
ScrFI	CCNGG	2 cut(s)	97, 660
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	209, 664
SmiMI	CAYNNNNRTG	1 cut(s)	205
Sse9I	AATT	8 cut(s)	59, 129, 186, 215, 238, 362, 564, 768
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	2 cut(s)	234, 393
StyD4I	CCNGG	2 cut(s)	95, 658
TaaI	ACNGT	1 cut(s)	748
TaiI	ACGT	4 cut(s)	142, 370, 635, 724
TaqI	TCGA	1 cut(s)	226
TasI	AATT	8 cut(s)	59, 129, 186, 215, 238, 362, 564, 768
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	4 cut(s)	191, 300, 458, 691
Tru1I	TTAA	2 cut(s)	275, 501
Tru9I	TTAA	2 cut(s)	275, 501
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	2 cut(s)	106, 148
Tsp45I	GTSAC	2 cut(s)	106, 148
TspDTI	ATGAA	2 cut(s)	292, 552
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	1 cut(s)	468
Tth111I	GACNNNGTC	1 cut(s)	634
XapI	RAATTY	3 cut(s)	129, 215, 768
XceI	RCATGY	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	234, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.