Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004493

Physical Location & Seq

Genomic Coordinates Reverse (-)

58541351 .. 58548838

Gene Structure 7488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG399000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5085 bp

ATGAAGCACCAGCAGAGCAGCTCATCGTCACCGTCGCAGTCGTCTGAGGCGGTCCCGTCTTCTTCGTCGTCGGCGTCGTCCACTGTGACGACGGACCAATCACATCCCGCCACCTCGAACTCGGCATCCGCGGCGGAGAAGCCGCTGCCAATACCGGCGGCGGCGGCGGAGGACCTTGCGGTGGGGTCGAGGGACGGCGGCGGGGCGCAGGAGACGGTGACGGTCGATCGGAGAGGGGAGTACTCGGCCGTGTGCAGATGGACGGTCCAGAATTTTCCGAGAATCAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTGGGAGGGTACGATTGCCGGTTGTTAATATACCCTAAGGGTGACTCACAGGCTCTGCCTGGGTACATCTCCATCTACCTCCAAATCATGGACCCGCGGGGCACCTCCTCCTCCAAATGGGACTGCTTCGCCAGCTACCGCCTCGCCATCGTCAACGTCGCCGACGATTCCAAGACCATTCACAGGGACAGCTGGCACCGCTTCTCCAGCAAGAAGAAATCACACGGTTGGTGCGATTTCACCCCCTCCTCTACTGTTTTTGATTCCAAGTTAGGTTATCTTTTCAATTCCGACTCCGTTTTGATCACCGCCGATATTTTGATATTGAATGAGTCCGTTAATTTCACGCGAGATAATAATAACGAGCTGCAGTCATCTGCCGGCTCCATGATGTCATCTTCCGTCGTGGCCAGCCCGGTCTCCGATGTGTTGAGTGGCAAGTTCACTTGGAAGGTGCATAACTTTAGCTTGTTTAAGGATATGATTAAGACGCAGAAGGTAATGAGCCCGGTGTTCCCCGCCGGCGAGTGTAATTTGAGGATTAGTGTTTATCAGAGCACTGTCAATGCTGTAGAGTATTTGTCAATGTGTTTGGAGAGCAAGGATACTGACAAGACGGTTGTGTTGTCCGATAGAAGTTGTTGGTGTTTGTTTCGAATGTCTGTGTTGAACCAGAAGCCGGGGTCTAATCACATGCACAGGGACTCGTATGGGAGGTTTGCTGCCGATAATAAGAGCGGGGATAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTCAGATTTTGTTGGGCCAGAGTCGGGGTTTTTGGCAGATGATACTGCGGTGTTTAGTACCTCATTTCATGTGATAAAGGAGTTTAGTAGCTTTTCAAAGAATGGGGGATTGGCTGCAGGGAGGAGTGGTAGTGGGGCGAGGAAGTTGGATGGACATATGGGGAAATTTACTTGGAAGATTGAAAATTTCACAAAGTTGAAGGATCTGTTAAAGAAGAGGAAGATAACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGGGACTGTCGGCTCATTGTTTATCCCCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACAGATTCACGGAACACTGCCAGTGATTGGAGTTGTTTTGTGAGTCATCGCTTGTCTGTTGTGAACCTGAAGATGGAAGAGAAGTCTGTCACAAAGGAGTCTCAGAACCGCTACTCCAAAGCTGCAAAGGACTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTCTTTGATCAAGATTCAGGGTTCCTTCTTCAGGACACTGTTGTATTCTCTGCAGAGGTCCTTATATTGAAAGAGACGTCAATTATGCAGGATTTGATTGATCAGGATACCGAGTCTGCTACCCAGATTGACAAGAATGTAAAACGAAGCTCTTTTACATGGAAGGTGGAGAACTTCCTGTCTTTTAAGGAAATAATGGAGACCCGAAAAATCTTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGGGTATATGAGTCCTTTGACACCATTTGTATTTATTTGGAGAGTGATCAGTCAGTTGGCAGTGATCTGGACAAAAATTTCTGGGTGCGATATAGGATGGCTGTTGTGAATCAAAAGAACCCTGCCAAAACTGTGTGGAAGGAGTCTTCCATATGTACAAAGACTTGGAACAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCAGATGCAGGGTTTCTTGTCCGTGATACCGTTGTTTTTGTATGTGAAATATTGGACTGCTGTCCTTGGTTTGAGTTTTCAGACCTAGAGGTTTTTGCTTCCGAGGATGATCAGGATGCGTTGACAACAGATCCTGATGAACTTGTTGATTCTGAAGATAGTGAAGGAATAGGTGGTGACGAAGAAGATATCTTTAGAAACCTGCTTTCCAGAGCTGGATTTCACCTCACGTATGGAGATAATCCGTCACAGCCACAGGTCACTTTACGAGAAAAGCTTCTGATGGATGCGGGTGCCATTGCTGGTTTCCTGACTGGACTCCGTGTTTATCTTGATGACCCTGCTAAAGTAAAGCGCCTGCTTCTTCCAACCAAGCTTTCTGGTAGTGGTGATGGAATGAAGGTCTTAAAGAATGATGAATCTTCTCCTAGTTTGATGAATTTACTAATGGGAGTCAAAGTGTTGCAGCAGGCTATTATTGATTTACTTTTGGACATTATGGTTGAGTGTTGCCAACCTACAGAAGGGAGTTGTAATGGTGATTTATCTGATGGAAACTCAAAAACTCCAGATGGAAGTGGAGCTGCTAGTCCGCTGCAATCTGATAGAGAAAATGGAGCAACAGAATCTGTGCATTGTCCCGTGTACGAGCGATTGGATGCCAGTGTTGATGAAAGTACCAGTGGTTCAGCTGTTCAAAGTTCTGACATGCACGGGGTTGGTATCCCAGGAAAAACTCTTCCTGGGCAGCCAATTTACCCCCCAGAAACATCTGCAGGGGCATCAGAAAATGTGTCCCTTCGTTCAAAGACTAAGTGGCCAGAGCAATCTGAGGAGCTCTTAGGATTGATTGTAAACTCACTGAGAGCTTTGGATGGAGCTGTTCCACAAGGCTGTCCTGAACCAAGACGTAGGCCTCAGTCTGCACAAAAGATTGCTCTTGTACTGGATAAAGCTCCTAAGCATTTGCAGCCTGATCTGGTGTCTTTGGTGCCCAAGTTGGTTGAACATTCAGAGCATCCACTTGCTGCCTTTGCACTTATTGAACGATTGCAAAAGCCAGATGCAGAACTTGCATTGCGGACACCTGTTTTCAGTGCTCTGAGTCAACTGGACTGTGGCAGTGAAGTGTGGGAACGGGTTTTATCTCAATCTTTAGAGTTTTTGTCAGATTCAAACGATGAACCTCTTGCTGCAACCATAGATTTCATATTTAAAGCTGCATCCCAGTGCCAACACCTACCTGAAGCAGTCAGATCTGTTCGTGTTAGGCTAAAGAATTTGGGTGTCGATGTTTCTCCTTGTGTCCTTGAATTATTGAGTAGAACTATAAATAGCTGGGGAGATGTTGCTGAAACCATACTTAGAGATATTGATTGTGATGATGATTTTGGTGATAGTTGCTCGACTATGCATTCTGGGCTTTTCTTGTTTGGAGAACATGGACCTTGTTCGGAACGGTTTCATTTGGTGGATGAGCAGGCTTTCCGGCCTTGTCGCCATTTTTCTGATATTTACATCTTGATTGAGATGTTATCCATACCTTGTCTGGCTGTAGAAGCCTCTCAAACGTTTGAGAGAGCTGTAGCTCGTGGTGCTATTGTGGCTCATTCTGTGGCCATGGTTTTGGAAAGGCGCCTTGCTCAAAGATTGAACCTTGATGCTAGATTTGTTGCGGAAAGCTTTCAGCAGACAGATTTGGTAGTAGAGGGAGAAGCCAGTGAACAGCTGAGAGTCCAACAAAACGATTTTACTTCAGTTCTTGGTCTTGCTGAAACATTGGCCCTCTCTAGAGATCCTTGTGTTAAGGGATTTGTGAAGATGCTCTACACATTATTGTTCAAATGGTATGCTGATGAGTCTTATCGAGGGAGAATTCTAAAGAGACTTGTTGATCGTGCCACTAGTACTACAGATAGTAGTCGTGAAATTGATCTAGATTTTGATATATTGGTGACACTAGCTTCTGAGGAGCAGGAAATTGTTAGACCAGTTTTGAGTATGATGCGGGAGGTTGCTGAACTTGCAAATGTTGATCGGGCTGCTCTTTGGCACCAGTTATGTGCTAGTGAAGATGAAATCATTCGCATGCGGGAAGAGAGGAAAGCAGAAACTGCTAACATGGCTAGAGAAAAAGCTGTTATATTGCAAAAACTGAGTGAATCCGAGGCCACTAACAACCGTCTTAAGTCTGAAATGAAGGCTGAGAATGACCGCTTTGCTCGAGAAAAGAAGGAGCTCTCGGAACGAATACAAGAAGTTGAGAGTCAGCTTGAGTGGCACCGCTCAGAGCGAGATGATGAAATTAGAAAGCTCACTACAGATAGGAAAGTGTTTCAGGATCGTCTTCATGATGCAGAGACACAACTCTCTCAATTGAAGTCCCGAAAACGTGATGAATTGAAGAAAGTTGTGAAGGAGAAAAATGCTCTAGCTGAAAGGTTGAAGGGTGCTGAAGCTGCACGTAAAAGATTTGATGAAGAACTTAAACGGTATGCCACAGAGAAGGTGACTCGAGAGGAAATTCGACATTCTCTGGAGGATGAAGTACGGAGACTGACACAAACAGTAGGACAAACAGAAGGAGAGAAACGAGAGAAGGAAGAGCAGGTTGCTCGGTGTGAAGCCTATATTGATGGGATGGAATCAAAACTGCAGGCCTGCCAGCAATATATTCATACCCTTGAGGCTTCACTTCAGGAAGAAATGTCCCGGCATGCTCCTCTGTATGGTGCTGGTTTGGAGGCATTATCAATGAAGGAGTTGGAGACACTGTCCCGTATACATGAAGAAGGGCTCAGGCAGATCCATACCCTTCAGCAGCGTAAGGGTAGTCCAGCTGGCAGTCCCCTTGTAAGCCCGCACACGCTCCCACACAATCATGGGCTATATCCTGCCGCACCCCCCCAAATGGCCGTTGGAGTGCCTCCTTCACTCATTCCAAACGGTGTCGGGATTCACAGCAATGGCCATGTGAATGGTGCTGTTGGACCCTGGTTCAACCATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FancD2 MATH

Protein Analysis

1694

Amino Acids

188.98

Weight (kDa)

5.5

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	86 - 212	3.3e-20	MATH domain
MATH	PF00917	90 - 214	1e-07	MATH domain
MATH_2	PF22486	253 - 385	3.6e-19	MATH domain
MATH_2	PF22486	421 - 555	3.6e-28	MATH domain
MATH	PF00917	451 - 557	2e-08	MATH domain
MATH_2	PF22486	586 - 708	5e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25320 AT2G25320 AT2G25320
fragaria_vesca	FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850 FvH4_2g28850
malus_domestica	MD08G1156500.v1.1 MD15G1127100.v1.1
prunus_persica	Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1 Prupe.1G482800_v2.0.a1
pyrus_communis	pycom08g12870 pycom15g11460
rosa_chinensis	RchiOBHm_Chr6g0297611
rosa_laevigata	RLG00000011577
rosa_multiflora	Rmu_ssc0000319.1_g000010
rosa_roxburghii	Rroxscaffold_7G00170320
rosa_rugosa	Rorug06G0274300 Rorug06G0274400.1 Rorug06G0274500 Rorug06G0274600
rosa_samantha	Rh6AG385100 Rh6BG393200 Rh6CG399000 Rh6DG385600
rosa_wichuraiana	Rw6G033550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1685
Acc36I	ACCTGC	2 cut(s)	2283, 4672
AccB1I	GGYRCC	7 cut(s)	419, 513, 2366, 3064, 3708, 4125, 4353
AccB7I	CCANNNNNTGG	2 cut(s)	406, 1467
AccBSI	CCGCTC	2 cut(s)	1056, 4359
AccI	GTMKAC	1 cut(s)	4855
AccII	CGCG	3 cut(s)	131, 415, 667
AclI	AACGTT	1 cut(s)	3644
AclWI	GGATC	5 cut(s)	1308, 2198, 3863, 4422, 4873
AcoI	YGGCCR	6 cut(s)	246, 726, 2891, 3690, 4986, 5041
AcuI	CTGAAG	8 cut(s)	1529, 1619, 2247, 3339, 3813, 4548, 4754, 4874
AcyI	GRCGYC	3 cut(s)	74, 1682, 3709
AflII	CTTAAG	1 cut(s)	4259
AhlI	ACTAGT	2 cut(s)	1601, 3977
AjnI	CCWGG	4 cut(s)	376, 2800, 2815, 5066
AjuI	GAANNNNNNNTTGG	4 cut(s)	1190, 1222, 2434, 2466
AloI	GAACNNNNNNTCC	4 cut(s)	110, 142, 1538, 1570
Alw21I	GWGCWC	4 cut(s)	878, 2913, 3175, 4314
AlwI	GGATC	5 cut(s)	1308, 2198, 3863, 4422, 4873
AlwNI	CAGNNNCTG	4 cut(s)	373, 2207, 2702, 4187
Ama87I	CYCGRG	3 cut(s)	1392, 4296, 4587
Asp700I	GAANNNNTTC	4 cut(s)	2349, 3534, 3756, 4155
AspLEI	GCGC	3 cut(s)	208, 2430, 3711
AsuC2I	CCSGG	4 cut(s)	734, 827, 999, 4786
AsuII	TTCGAA	1 cut(s)	973
AvaI	CYCGRG	3 cut(s)	1392, 4296, 4587
AvaII	GGWCC	8 cut(s)	52, 94, 172, 265, 409, 1663, 3518, 5063
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	3 cut(s)	298, 422, 3069
BaeI	ACNNNNGTAYC	4 cut(s)	1131, 1164, 2091, 2124
BalI	TGGCCA	4 cut(s)	728, 2893, 3692, 5043
BanI	GGYRCC	7 cut(s)	419, 513, 2366, 3064, 3708, 4125, 4353
BanII	GRGCYC	4 cut(s)	827, 2913, 4314, 4872
BarI	GAAGNNNNNNTAC	4 cut(s)	1744, 1776, 3884, 3916
BauI	CACGAG	1 cut(s)	3663
BbsI	GAAGAC	3 cut(s)	51, 1998, 4412
Bbv12I	GWGCWC	4 cut(s)	878, 2913, 3175, 4314
BceAI	ACGGC	3 cut(s)	211, 233, 4973
BcgI	CGANNNNNNTGC	4 cut(s)	295, 329, 4670, 4704
BciT130I	CCWGG	4 cut(s)	378, 2802, 2817, 5068
BciVI	GTATCC	3 cut(s)	916, 1705, 2807
BclI	TGATCA	5 cut(s)	621, 1612, 1705, 1906, 2182
BcnI	CCSGG	4 cut(s)	734, 827, 999, 4786
BcuI	ACTAGT	2 cut(s)	1601, 3977
BfoI	RGCGCY	2 cut(s)	2431, 3712
BfrI	CTTAAG	1 cut(s)	4259
BfuAI	ACCTGC	2 cut(s)	2283, 4672
BfuI	GTATCC	3 cut(s)	916, 1705, 2807
BglII	AGATCT	1 cut(s)	3329
BmcAI	AGTACT	3 cut(s)	242, 311, 3982
Bme1390I	CCNGG	8 cut(s)	378, 734, 827, 999, 2802, 2817, 4786, 5068
Bme18I	GGWCC	8 cut(s)	52, 94, 172, 265, 409, 1663, 3518, 5063
BmeT110I	CYCGRG	3 cut(s)	1392, 4296, 4587
BmrFI	CCNGG	8 cut(s)	378, 734, 827, 999, 2802, 2817, 4786, 5068
BmrI	ACTGGG	2 cut(s)	1582, 3295
BmuI	ACTGGG	2 cut(s)	1582, 3295
BoxI	GACNNNNGTC	1 cut(s)	2133
BpiI	GAAGAC	3 cut(s)	51, 1998, 4412
BpmI	CTGGAG	3 cut(s)	508, 2625, 4631
Bpu10I	CCTNAGC	2 cut(s)	3033, 4871
Bpu14I	TTCGAA	1 cut(s)	973
BpuEI	CTTGAG	2 cut(s)	4367, 4778
BpuMI	CCSGG	4 cut(s)	734, 827, 999, 4786
BsaAI	YACGTR	2 cut(s)	2304, 4538
BsaHI	GRCGYC	3 cut(s)	74, 1682, 3709
BsaI	GGTCTC	2 cut(s)	742, 1799
Bse118I	RCCGGY	4 cut(s)	154, 336, 698, 839
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	3 cut(s)	2370, 3149, 5044
BseBI	CCWGG	4 cut(s)	378, 2802, 2817, 5068
BseMI	GCAATG	3 cut(s)	2370, 3149, 5044
BseRI	GAGGAG	7 cut(s)	415, 418, 556, 1234, 2921, 4058, 4785
BseSI	GKGCMC	3 cut(s)	298, 422, 3069
BseX3I	CGGCCG	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	3411
BsgI	GTGCAG	3 cut(s)	274, 2982, 4518
Bsh1236I	CGCG	3 cut(s)	131, 415, 667
Bsh1285I	CGRYCG	3 cut(s)	225, 229, 249
BshNI	GGYRCC	7 cut(s)	419, 513, 2366, 3064, 3708, 4125, 4353
BsiEI	CGRYCG	3 cut(s)	225, 229, 249
BsiHKAI	GWGCWC	4 cut(s)	878, 2913, 3175, 4314
BsiHKCI	CYCGRG	3 cut(s)	1392, 4296, 4587
BsiSI	CCGG	9 cut(s)	155, 337, 699, 734, 827, 840, 998, 3562, 4786
BsmBI	CGTCTC	2 cut(s)	206, 1673
BsmI	GAATGC	1 cut(s)	3487
Bso31I	GGTCTC	2 cut(s)	742, 1799
BsoBI	CYCGRG	3 cut(s)	1392, 4296, 4587
Bsp119I	TTCGAA	1 cut(s)	973
Bsp1286I	GDGCHC	9 cut(s)	298, 422, 827, 878, 2913, 3069, 3175, 4314, 4872
Bsp1407I	TGTACA	1 cut(s)	2015
Bsp19I	CCATGG	1 cut(s)	3693
BspFNI	CGCG	3 cut(s)	131, 415, 667
BspHI	TCATGA	2 cut(s)	2049, 4423
BspMAI	CTGCAG	5 cut(s)	690, 1216, 1660, 2851, 4731
BspMI	ACCTGC	2 cut(s)	2283, 4672
BspPI	GGATC	5 cut(s)	1308, 2198, 3863, 4422, 4873
BspQI	GCTCTTC	1 cut(s)	4671
BspT104I	TTCGAA	1 cut(s)	973
BspT107I	GGYRCC	7 cut(s)	419, 513, 2366, 3064, 3708, 4125, 4353
BspTI	CTTAAG	1 cut(s)	4259
BspTNI	GGTCTC	2 cut(s)	742, 1799
BsrBI	CCGCTC	2 cut(s)	1056, 4359
BsrDI	GCAATG	3 cut(s)	2370, 3149, 5044
BsrFI	RCCGGY	4 cut(s)	154, 336, 698, 839
BsrGI	TGTACA	1 cut(s)	2015
BssAI	RCCGGY	4 cut(s)	154, 336, 698, 839
BssNAI	GTATAC	1 cut(s)	4856
BssNI	GRCGYC	3 cut(s)	74, 1682, 3709
BssSI	CACGAG	1 cut(s)	3663
BssT1I	CCWWGG	2 cut(s)	2138, 3693
Bst1107I	GTATAC	1 cut(s)	4856
Bst2BI	CACGAG	1 cut(s)	3663
Bst2UI	CCWGG	4 cut(s)	378, 2802, 2817, 5068
Bst6I	CTCTTC	5 cut(s)	1307, 1512, 2817, 4164, 4671
BstACI	GRCGYC	3 cut(s)	74, 1682, 3709
BstAFI	CTTAAG	1 cut(s)	4259
BstAPI	GCANNNNNTGC	2 cut(s)	3146, 4187
BstAUI	TGTACA	1 cut(s)	2015
BstBAI	YACGTR	2 cut(s)	2304, 4538
BstBI	TTCGAA	1 cut(s)	973
BstDSI	CCRYGG	3 cut(s)	129, 413, 3693
BstENI	CCTNNNNNAGG	2 cut(s)	1634, 2595
BstFNI	CGCG	3 cut(s)	131, 415, 667
BstH2I	RGCGCY	2 cut(s)	2431, 3712
BstHHI	GCGC	3 cut(s)	208, 2430, 3711
BstMCI	CGRYCG	3 cut(s)	225, 229, 249
BstNI	CCWGG	4 cut(s)	378, 2802, 2817, 5068
BstNSI	RCATGY	4 cut(s)	1015, 2785, 4165, 4793
BstPAI	GACNNNNGTC	1 cut(s)	2133
BstSCI	CCNGG	8 cut(s)	376, 732, 825, 997, 2800, 2815, 4784, 5066
BstSLI	GKGCMC	3 cut(s)	298, 422, 3069
BstUI	CGCG	3 cut(s)	131, 415, 667
BstV2I	GAAGAC	3 cut(s)	51, 1998, 4412
BstX2I	RGATCY	5 cut(s)	1300, 2203, 3329, 3868, 4878
BstXI	CCANNNNNNTGG	2 cut(s)	3700, 5051
BstYI	RGATCY	5 cut(s)	1300, 2203, 3329, 3868, 4878
BstZ17I	GTATAC	1 cut(s)	4856
BstZI	CGGCCG	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	3 cut(s)	916, 1705, 2807
BtgI	CCRYGG	3 cut(s)	129, 413, 3693
BtgZI	GCGATG	1 cut(s)	1472
BtsI	GCAGTG	3 cut(s)	1455, 1927, 3202
BveI	ACCTGC	2 cut(s)	2283, 4672
CaiI	CAGNNNCTG	4 cut(s)	373, 2207, 2702, 4187
CciI	TCATGA	2 cut(s)	2049, 4423
CfoI	GCGC	3 cut(s)	208, 2430, 3711
Cfr10I	RCCGGY	4 cut(s)	154, 336, 698, 839
Cfr42I	CCGCGG	2 cut(s)	132, 416
CseI	GACGC	3 cut(s)	63, 817, 1603
DinI	GGCGCC	1 cut(s)	3710
DraI	TTTAAA	1 cut(s)	3289
EaeI	YGGCCR	6 cut(s)	246, 726, 2891, 3690, 4986, 5041
EagI	CGGCCG	1 cut(s)	246
Eam1104I	CTCTTC	5 cut(s)	1307, 1512, 2817, 4164, 4671
EarI	CTCTTC	5 cut(s)	1307, 1512, 2817, 4164, 4671
EciI	GGCGGA	2 cut(s)	149, 182
Ecl136II	GAGCTC	2 cut(s)	2911, 4312
EclXI	CGGCCG	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	2138, 3693
Eco147I	AGGCCT	2 cut(s)	2989, 4733
Eco24I	GRGCYC	4 cut(s)	827, 2913, 4314, 4872
Eco31I	GGTCTC	2 cut(s)	742, 1799
Eco32I	GATATC	1 cut(s)	2263
Eco47I	GGWCC	8 cut(s)	52, 94, 172, 265, 409, 1663, 3518, 5063
Eco52I	CGGCCG	1 cut(s)	246
Eco53kI	GAGCTC	2 cut(s)	2911, 4312
Eco57I	CTGAAG	8 cut(s)	1529, 1619, 2247, 3339, 3813, 4548, 4754, 4874
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	3 cut(s)	1392, 4296, 4587
EcoICRI	GAGCTC	2 cut(s)	2911, 4312
EcoNI	CCTNNNNNAGG	2 cut(s)	1634, 2595
EcoO109I	RGGNCCY	2 cut(s)	172, 1663
EcoRI	GAATTC	1 cut(s)	3948
EcoRII	CCWGG	4 cut(s)	376, 2800, 2815, 5066
EcoRV	GATATC	1 cut(s)	2263
EcoT14I	CCWWGG	2 cut(s)	2138, 3693
EcoT22I	ATGCAT	1 cut(s)	3489
EcoT38I	GRGCYC	4 cut(s)	827, 2913, 4314, 4872
EgeI	GGCGCC	1 cut(s)	3710
EheI	GGCGCC	1 cut(s)	3710
ErhI	CCWWGG	2 cut(s)	2138, 3693
Esp3I	CGTCTC	2 cut(s)	206, 1673
FauNDI	CATATG	2 cut(s)	1254, 2012
FbaI	TGATCA	5 cut(s)	621, 1612, 1705, 1906, 2182
FblI	GTMKAC	1 cut(s)	4855
FriOI	GRGCYC	4 cut(s)	827, 2913, 4314, 4872
GlaI	GCGC	3 cut(s)	207, 2429, 3710
GsaI	CCCAGC	1 cut(s)	3415
GsuI	CTGGAG	3 cut(s)	508, 2625, 4631
HaeII	RGCGCY	2 cut(s)	2431, 3712
HapII	CCGG	9 cut(s)	155, 337, 699, 734, 827, 840, 998, 3562, 4786
HgaI	GACGC	3 cut(s)	63, 817, 1603
HhaI	GCGC	3 cut(s)	208, 2430, 3711
Hin1I	GRCGYC	3 cut(s)	74, 1682, 3709
Hin6I	GCGC	3 cut(s)	206, 2428, 3709
HinP1I	GCGC	3 cut(s)	206, 2428, 3709
HincII	GTYRAC	3 cut(s)	472, 2196, 3182
HindII	GTYRAC	3 cut(s)	472, 2196, 3182
HindIII	AAGCTT	3 cut(s)	2348, 2447, 3754
HpaII	CCGG	9 cut(s)	155, 337, 699, 734, 827, 840, 998, 3562, 4786
Hpy99I	CGWCG	8 cut(s)	37, 70, 73, 79, 94, 479, 485, 725
HpyCH4IV	ACGT	7 cut(s)	474, 1682, 2303, 2983, 3644, 4465, 4537
HpySE526I	ACGT	7 cut(s)	474, 1682, 2303, 2983, 3644, 4465, 4537
Hsp92I	GRCGYC	3 cut(s)	74, 1682, 3709
HspAI	GCGC	3 cut(s)	206, 2428, 3709
KasI	GGCGCC	1 cut(s)	3708
KroI	GCCGGC	2 cut(s)	698, 839
KroNI	GCCGGC	2 cut(s)	700, 841
Ksp22I	TGATCA	5 cut(s)	621, 1612, 1705, 1906, 2182
KspI	CCGCGG	2 cut(s)	132, 416
LguI	GCTCTTC	1 cut(s)	4671
MaeII	ACGT	7 cut(s)	474, 1682, 2303, 2983, 3644, 4465, 4537
MbiI	CCGCTC	2 cut(s)	1056, 4359
MfeI	CAATTG	1 cut(s)	4448
MflI	RGATCY	5 cut(s)	1300, 2203, 3329, 3868, 4878
MhlI	GDGCHC	9 cut(s)	298, 422, 827, 878, 2913, 3069, 3175, 4314, 4872
MlsI	TGGCCA	4 cut(s)	728, 2893, 3692, 5043
MluNI	TGGCCA	4 cut(s)	728, 2893, 3692, 5043
Mly113I	GGCGCC	1 cut(s)	3709
MmeI	TCCRAC	8 cut(s)	633, 1224, 2049, 2465, 3835, 4818, 4972, 5041
Mox20I	TGGCCA	4 cut(s)	728, 2893, 3692, 5043
Mph1103I	ATGCAT	1 cut(s)	3489
MreI	CGCCGGCG	1 cut(s)	839
MroNI	GCCGGC	2 cut(s)	698, 839
MroXI	GAANNNNTTC	4 cut(s)	2349, 3534, 3756, 4155
MscI	TGGCCA	4 cut(s)	728, 2893, 3692, 5043
MslI	CAYNNNNRTG	5 cut(s)	3301, 4160, 4953, 5037, 5049
Msp20I	TGGCCA	4 cut(s)	728, 2893, 3692, 5043
MspA1I	CMGCKG	8 cut(s)	131, 145, 415, 510, 2668, 2765, 3802, 4913
MspCI	CTTAAG	1 cut(s)	4259
MspI	CCGG	9 cut(s)	155, 337, 699, 734, 827, 840, 998, 3562, 4786
MspR9I	CCNGG	8 cut(s)	378, 734, 827, 999, 2802, 2817, 4786, 5068
MunI	CAATTG	1 cut(s)	4448
Mva1269I	GAATGC	1 cut(s)	3487
MvaI	CCWGG	4 cut(s)	378, 2802, 2817, 5068
MvnI	CGCG	3 cut(s)	131, 415, 667
NaeI	GCCGGC	2 cut(s)	700, 841
NarI	GGCGCC	1 cut(s)	3709
NciI	CCSGG	4 cut(s)	734, 827, 999, 4786
NcoI	CCATGG	1 cut(s)	3693
NdeI	CATATG	2 cut(s)	1254, 2012
NgoMIV	GCCGGC	2 cut(s)	698, 839
NmeAIII	GCCGAG	2 cut(s)	101, 224
NsiI	ATGCAT	1 cut(s)	3489
NspI	RCATGY	4 cut(s)	1015, 2785, 4165, 4793
NspV	TTCGAA	1 cut(s)	973
PaeI	GCATGC	2 cut(s)	4165, 4793
PaeR7I	CTCGAG	2 cut(s)	4296, 4587
PagI	TCATGA	2 cut(s)	2049, 4423
PceI	AGGCCT	2 cut(s)	2989, 4733
PciSI	GCTCTTC	1 cut(s)	4671
PcsI	WCGNNNNNNNCGW	4 cut(s)	71, 74, 480, 549
PctI	GAATGC	1 cut(s)	3487
PdiI	GCCGGC	2 cut(s)	700, 841
PdmI	GAANNNNTTC	4 cut(s)	2349, 3534, 3756, 4155
PflFI	GACNNNGTC	1 cut(s)	4846
PflMI	CCANNNNNTGG	2 cut(s)	406, 1467
Ple19I	CGATCG	1 cut(s)	229
PluTI	GGCGCC	1 cut(s)	3712
Ppu21I	YACGTR	2 cut(s)	2304, 4538
PpuMI	RGGWCCY	2 cut(s)	172, 1663
PshAI	GACNNNNGTC	1 cut(s)	2133
Psp124BI	GAGCTC	2 cut(s)	2913, 4314
Psp1406I	AACGTT	1 cut(s)	3644
Psp5II	RGGWCCY	2 cut(s)	172, 1663
Psp6I	CCWGG	4 cut(s)	376, 2800, 2815, 5066
PspFI	CCCAGC	1 cut(s)	3411
PspGI	CCWGG	4 cut(s)	376, 2800, 2815, 5066
PspPPI	RGGWCCY	2 cut(s)	172, 1663
PsrI	GAACNNNNNNTAC	2 cut(s)	2743, 2775
PstI	CTGCAG	5 cut(s)	690, 1216, 1660, 2851, 4731
PstNI	CAGNNNCTG	4 cut(s)	373, 2207, 2702, 4187
PsuI	RGATCY	5 cut(s)	1300, 2203, 3329, 3868, 4878
PsyI	GACNNNGTC	1 cut(s)	4846
PvuI	CGATCG	1 cut(s)	229
PvuII	CAGCTG	4 cut(s)	510, 2765, 3802, 4913
RseI	CAYNNNNRTG	5 cut(s)	3301, 4160, 4953, 5037, 5049
SacI	GAGCTC	2 cut(s)	2913, 4314
SacII	CCGCGG	2 cut(s)	132, 416
SapI	GCTCTTC	1 cut(s)	4671
ScaI	AGTACT	3 cut(s)	242, 311, 3982
ScrFI	CCNGG	8 cut(s)	378, 734, 827, 999, 2802, 2817, 4786, 5068
SduI	GDGCHC	9 cut(s)	298, 422, 827, 878, 2913, 3069, 3175, 4314, 4872
SfoI	GGCGCC	1 cut(s)	3710
Sfr274I	CTCGAG	2 cut(s)	4296, 4587
Sfr303I	CCGCGG	2 cut(s)	132, 416
SfuI	TTCGAA	1 cut(s)	973
SgrAI	CRCCGGYG	1 cut(s)	839
SgrBI	CCGCGG	2 cut(s)	132, 416
SinI	GGWCC	8 cut(s)	52, 94, 172, 265, 409, 1663, 3518, 5063
SlaI	CTCGAG	2 cut(s)	4296, 4587
SmiMI	CAYNNNNRTG	5 cut(s)	3301, 4160, 4953, 5037, 5049
SmlI	CTYRAG	5 cut(s)	4259, 4296, 4346, 4587, 4757
SmoI	CTYRAG	5 cut(s)	4259, 4296, 4346, 4587, 4757
SpeI	ACTAGT	2 cut(s)	1601, 3977
SphI	GCATGC	2 cut(s)	4165, 4793
SseBI	AGGCCT	2 cut(s)	2989, 4733
SspDI	GGCGCC	1 cut(s)	3708
SspI	AATATT	1 cut(s)	2124
SstI	GAGCTC	2 cut(s)	2913, 4314
StuI	AGGCCT	2 cut(s)	2989, 4733
StyD4I	CCNGG	8 cut(s)	376, 732, 825, 997, 2800, 2815, 4784, 5066
StyI	CCWWGG	2 cut(s)	2138, 3693
TaiI	ACGT	7 cut(s)	477, 1685, 2306, 2986, 3647, 4468, 4540
TatI	WGTACW	5 cut(s)	240, 309, 2015, 3016, 3980
TauI	GCSGC	7 cut(s)	134, 145, 161, 164, 167, 201, 4973
TspGWI	ACGGA	9 cut(s)	107, 604, 643, 709, 1465, 2084, 2307, 2384, 4639
Tth111I	GACNNNGTC	1 cut(s)	4846
Van91I	CCANNNNNTGG	2 cut(s)	406, 1467
Vha464I	CTTAAG	1 cut(s)	4259
VpaK11BI	GGWCC	8 cut(s)	52, 94, 172, 265, 409, 1663, 3518, 5063
XagI	CCTNNNNNAGG	2 cut(s)	1634, 2595
XbaI	TCTAGA	2 cut(s)	3863, 4009
XceI	RCATGY	4 cut(s)	1015, 2785, 4165, 4793
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3619, 4988
XhoI	CTCGAG	2 cut(s)	4296, 4587
XmiI	GTMKAC	1 cut(s)	4855
XmnI	GAANNNNTTC	4 cut(s)	2349, 3534, 3756, 4155
ZraI	GACGTC	1 cut(s)	1683
ZrmI	AGTACT	3 cut(s)	242, 311, 3982
Zsp2I	ATGCAT	1 cut(s)	3489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.