Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005926

Physical Location & Seq

Genomic Coordinates Forward (+)

12207578 .. 12208956

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1162000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGGGCGGCTCCGAGATCAAAGTCCTTCGGAGAAGGTATGGATCATGCATTCAGATCAAAGTCCCTCAGAATCAACCCGCGTTAAGAGAGGGGTCTCTGAGAGGGGAGAAGGTTCCCGGCGAGCTGCAAGACATTGATAGGCAGGAGTTTAATAAAGTCATGGCCTTGATGCGATCTCAAGGCAAACAGAACATGGAAGGCCACAGGCCCAAGGTTTCTGTCGAAGACAAAGGACTGCTCGAGTACTTTTTTGGCAAAGACGGCAAAAGAAGTCTGAAACTTGAAAGAATCGTTCAGTTTTTCCGTGATTTACACGAAGAAGTACGTGGCATCTCTGTTTCTACTAATGTGCTTGACATAATATTCCATGTATTCGATGCAAATGGTGACAGGGATTTAAGTGCAAATGAGTTTGTACGAGTTTTACAAAGACGCGGAGGCGAAATCCAAGAGACAGGCTTAAGGGGACTCCTATCTTGCTGGTTAAACTGTTCCTGTAAAGCTTTTGGTCAGAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

175

Amino Acids

19.84

Weight (kDa)

9.3

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005926)

Species	Orthologous Gene IDs
malus_domestica	MD02G1018100.v1.1 MD15G1162000.v1.1
prunus_persica	Prupe.7G257300_v2.0.a1
pyrus_communis	pycom15g14560
rosa_chinensis	RchiOBHm_Chr2g0087011 RchiOBHm_Chr7g0219711
rosa_laevigata	RLG00000002277 RLG00000015822
rosa_multiflora	Rmu_sc0000902.1_g000013 Rmu_sc0000902.1_g000014 Rmu_sc0010698.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153960 Rroxscaffold_3G00239910 Rroxscaffold_3G00239920 Rroxscaffold_3G00239930
rosa_rugosa	Rorug01G0471500 Rorug07G0186800
rosa_samantha	Rh2AG024300 Rh2BG024800 Rh2CG024900 Rh2DG024800 Rh7AG330900 Rh7BG320600 Rh7CG348200 Rh7DG326300
rosa_wichuraiana	Rw2G001910 Rw2G001960 Rw7G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	83, 438
AciI	CCGC	3 cut(s)	9, 81, 438
AclWI	GGATC	1 cut(s)	52
AfaI	GTAC	3 cut(s)	248, 327, 420
AflII	CTTAAG	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	2 cut(s)	127, 506
AluI	AGCT	2 cut(s)	127, 506
Alw26I	GTCTC	2 cut(s)	102, 449
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	3 cut(s)	165, 202, 209
ApeKI	GCWGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	102, 449
BfrI	CTTAAG	1 cut(s)	463
BisI	GCNGC	2 cut(s)	10, 128
BlsI	GCNGC	2 cut(s)	11, 129
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	13, 117
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	162, 342, 370
BpiI	GAAGAC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	83, 92
BseXI	GCAGC	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	83, 438
BshFI	GGCC	3 cut(s)	167, 204, 211
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	2 cut(s)	50, 483
BsmAI	GTCTC	2 cut(s)	102, 449
BsmFI	GGGAC	2 cut(s)	50, 483
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	167, 204, 211
Bso31I	GGTCTC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	18, 44, 57, 176
BspACI	CCGC	3 cut(s)	9, 81, 438
BspANI	GGCC	3 cut(s)	167, 204, 211
BspCNI	CTCAG	2 cut(s)	82, 93
BspFNI	CGCG	2 cut(s)	83, 438
BspLI	GGNNCC	2 cut(s)	13, 117
BspPI	GGATC	1 cut(s)	52
BspTI	CTTAAG	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	4 cut(s)	18, 44, 57, 176
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	494
BstAFI	CTTAAG	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	69, 101
BstFNI	CGCG	2 cut(s)	83, 438
BstKTI	GATC	4 cut(s)	21, 47, 60, 179
BstMAI	GTCTC	2 cut(s)	102, 449
BstMBI	GATC	4 cut(s)	18, 44, 57, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	118
BstUI	CGCG	2 cut(s)	83, 438
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	167, 204, 211
Cac8I	GCNNGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	247, 326, 419
CviAII	CATG	4 cut(s)	48, 163, 196, 371
CviJI	RGCY	7 cut(s)	12, 127, 167, 204, 211, 462, 506
CviKI_1	RGCY	7 cut(s)	12, 127, 167, 204, 211, 462, 506
CviQI	GTAC	3 cut(s)	247, 326, 419
DdeI	CTNAG	2 cut(s)	69, 101
DpnI	GATC	4 cut(s)	20, 46, 59, 178
DpnII	GATC	4 cut(s)	18, 44, 57, 176
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	51, 166, 199, 374
FaiI	YATR	6 cut(s)	42, 49, 164, 197, 362, 372
FaqI	GGGAC	2 cut(s)	50, 483
FatI	CATG	4 cut(s)	47, 162, 195, 370
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	10, 128
Fsp4HI	GCNGC	2 cut(s)	10, 128
GluI	GCNGC	2 cut(s)	10, 128
HaeIII	GGCC	3 cut(s)	167, 204, 211
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	51, 166, 199, 374
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	3 cut(s)	73, 291, 471
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	7 cut(s)	16, 33, 57, 72, 102, 279, 516
HpyAV	CCTTC	4 cut(s)	30, 38, 106, 194
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	4 cut(s)	51, 130, 383, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	69, 101
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	4 cut(s)	51, 166, 199, 374
Kzo9I	GATC	4 cut(s)	18, 44, 57, 176
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	7 cut(s)	131, 133, 193, 379, 444, 469, 511
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	3 cut(s)	162, 342, 370
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	4 cut(s)	20, 46, 59, 178
MboI	GATC	4 cut(s)	18, 44, 57, 176
MboII	GAAGA	2 cut(s)	239, 332
MlyI	GAGTC	1 cut(s)	465
MnlI	CCTC	4 cut(s)	78, 85, 98, 434
Mph1103I	ATGCAT	1 cut(s)	53
MseI	TTAA	5 cut(s)	86, 153, 401, 464, 488
MspCI	CTTAAG	1 cut(s)	463
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	51
MvnI	CGCG	2 cut(s)	83, 438
MwoI	GCNNNNNNNGC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	4 cut(s)	18, 44, 57, 176
NlaIII	CATG	4 cut(s)	51, 166, 199, 374
NlaIV	GGNNCC	2 cut(s)	13, 117
NmuCI	GTSAC	1 cut(s)	389
NsiI	ATGCAT	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	242
PctI	GAATGC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	73, 291
PkrI	GCNGC	2 cut(s)	11, 129
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
Ppu21I	YACGTR	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	13, 117
PspPI	GGNCC	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	242
RsaI	GTAC	3 cut(s)	248, 327, 420
RsaNI	GTAC	3 cut(s)	247, 326, 419
SaqAI	TTAA	5 cut(s)	86, 153, 401, 464, 488
SatI	GCNGC	2 cut(s)	10, 128
Sau3AI	GATC	4 cut(s)	18, 44, 57, 176
Sau96I	GGNCC	1 cut(s)	210
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	6 cut(s)	41, 117, 129, 219, 331, 508
SfaNI	GCATC	3 cut(s)	162, 342, 370
Sfr274I	CTCGAG	1 cut(s)	242
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	3 cut(s)	180, 242, 463
SmoI	CTYRAG	3 cut(s)	180, 242, 463
SsiI	CCGC	3 cut(s)	9, 81, 438
SspI	AATATT	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	494
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	3 cut(s)	225, 243, 378
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	73, 291
Tru1I	TTAA	5 cut(s)	86, 153, 401, 464, 488
Tru9I	TTAA	5 cut(s)	86, 153, 401, 464, 488
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	296
Vha464I	CTTAAG	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	242
ZrmI	AGTACT	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.