Rw2G001960

Calcium uptake protein 1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
1614645 .. 1616699
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001960.1

Sequence Viewer

Length: 1458 bp
ATGTTTTCTTGGGCATCTTCAAGAAGAACTTCAGGGGTTGTTTTGGGTGTTCAACGACTCGGCTCTCGCACATTGTTCAGTAAATCACAACCTTCATCATCGCCATCTTCGTCTTCTTCGATCTCATCATGTGGTGGCAGTTTTGGCTGTAATAATGAGTACAATCACAAGAGTAGATCAGGCTCCTCCAATAAGGGTAGTAAATTTGATTTGATTCAGAGGTCAGTTTCTTCAGGGGTTCTAATTCTCGGGTCAAGCATAGGCTATTCTTATTGGTCTTCTTCTACCTTGGATCCAAACGCCTCTGTTTGTTTTGCTGATTCCAAAGAGGAGGCAGCATGGGCAATCGAGCAGGACCCTGCAGAACAATTCAAGTCCCTCTTTTCAAATACATTTAGGAGAAAAAAGTTCTTTACGTATGAAAAAAAGATAAGAGAGCGAAGTACCCCTGAAAAGATTTTCAATTACTTTGCATCAGTTCGAACCCCTAGCGGAGAGTGCTTTATGACTCCGGGGGACTTGATGCGAGCTGTTGTTCCTGTGTTTCCTCCCTATGATTCAAATCGGGTTCGAGAAGGCTCTTTAAGAGGGGAAAATGTTCCTGGAGAATTGCAATGTGCTCCTTCTAAATTCTTCATGCTTTTCGACACTGATGGTGATGGCCTCATTTCATTTCAAGAGTACATGTTTTTCGTCACTCTCCTCAGCATTCCTGAATCGAGTTTTACTGTGGCATTTAAAATGTTCGATCTTGACAACAGTGGAGACATTGATAAGGAAGAGTTTAACAGAGTTATGGCATTGATGCGAAATCACAACAATAAAATCAAGGACGGCCACAGGGTCAAAGTTGGTGTAGAAGAGGGAGGAATACTCGAGTACTTCTTCGGCAAAGACGGCAAAAAAGGCCTTAAGCATGAAAGATTTGTTCAGTTTTTCAGGGATTTACACGAGGAAATGTTGCGCTTGGAGTTTGCTCATTATGACTACAAATCAAAAGGAACCATAACAGCTAAAGATTTTGCCTTGTCCTTGGTTGCATCTGCTGATCTCAGTGACTTATACAAGTTGCTTGATCGTGTTGACGATATTAACAACGCCCCACGTCTTAACAACATACAAATTACATACAAGGAATTTAAAGATTTTGCAGAGCTACGCAAGAATTTGCAGTCTTTCTCTTTGGCCATTTTCAGCTACGGCGAGGTTAATGGGGTTTTGACAAAATCAGATCTCCAGAGAGCAGCTTCCAAAGTATGTGGCATCAATGTTACAGACAATGTGATGGACATAATCTTCCATGTATTCGATGCAAATGGTGATGGTGACCTAAGTGCGAACGAGTTTGTCAAAGTTTTACAGAACCGTGGAGGTGAACCCGTAGAGTCAGGCCTCAGGGGATTCCTAACTTGCTTCTTAAACTGTGCAACTAAAAGCTGCTCCTACGCTCAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

54.25

Weight (kDa)

7.04

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_5 PF13202 245 - 266 2.6e-06 EF hand
EF-hand_8 PF13833 404 - 455 4.2e-08 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 492
AclWI GGATC 2 cut(s) 287, 300
AcoI YGGCCR 2 cut(s) 835, 1185
AcsI RAATTY 4 cut(s) 203, 629, 1136, 1165
AcuI CTGAAG 2 cut(s) 15, 216
AfaI GTAC 4 cut(s) 161, 445, 683, 881
AflII CTTAAG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 7 cut(s) 21, 53, 373, 387, 463, 561, 677
AjiI CACGTC 1 cut(s) 1106
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 6 cut(s) 530, 1013, 1156, 1197, 1247, 1437
AluI AGCT 6 cut(s) 530, 1013, 1156, 1197, 1247, 1437
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 1 cut(s) 759
AlwI GGATC 2 cut(s) 287, 300
Ama87I CYCGRG 2 cut(s) 248, 875
AoxI GGCC 5 cut(s) 661, 835, 907, 1185, 1390
ApeKI GCWGC 3 cut(s) 335, 1244, 1437
ApoI RAATTY 4 cut(s) 203, 629, 1136, 1165
Asp700I GAANNNNTTC 2 cut(s) 28, 597
AspLEI GCGC 1 cut(s) 966
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 4 cut(s) 668, 1331, 1337, 1385
AsuII TTCGAA 1 cut(s) 481
AvaI CYCGRG 2 cut(s) 248, 875
AvaII GGWCC 1 cut(s) 355
AxyI CCTNAGG 1 cut(s) 1394
BalI TGGCCA 1 cut(s) 1187
BamHI GGATCC 1 cut(s) 292
BauI CACGAG 1 cut(s) 950
BbsI GAAGAC 2 cut(s) 105, 270
Bbv12I GWGCWC 1 cut(s) 622
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 3 cut(s) 347, 1256, 1424
BccI CCATC 5 cut(s) 112, 647, 653, 1279, 1316
BceAI ACGGC 3 cut(s) 850, 913, 1216
BciT130I CCWGG 1 cut(s) 603
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 1 cut(s) 759
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 911
BglII AGATCT 1 cut(s) 1231
BisI GCNGC 3 cut(s) 336, 1245, 1438
BlsI GCNGC 3 cut(s) 337, 1246, 1439
BmcAI AGTACT 1 cut(s) 881
Bme1390I CCNGG 2 cut(s) 513, 603
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 2 cut(s) 248, 875
BmgBI CACGTC 1 cut(s) 1106
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 4 cut(s) 184, 294, 357, 1003
BmrFI CCNGG 2 cut(s) 513, 603
BmsI GCATC 7 cut(s) 23, 482, 513, 795, 1049, 1272, 1300
BpiI GAAGAC 2 cut(s) 105, 270
BplI GAGNNNNNCTC 2 cut(s) 858, 890
BpmI CTGGAG 2 cut(s) 624, 1220
Bpu10I CCTNAGC 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 4 cut(s) 288, 512, 1032, 1366
Bse21I CCTNAGG 1 cut(s) 1394
Bse3DI GCAATG 1 cut(s) 620
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 4 cut(s) 288, 512, 1032, 1366
BseJI GATNNNNATC 1 cut(s) 561
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 3 cut(s) 718, 1066, 1408
BseRI GAGGAG 3 cut(s) 175, 344, 692
BseXI GCAGC 3 cut(s) 347, 1256, 1424
BshFI GGCC 5 cut(s) 663, 837, 909, 1187, 1392
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 2 cut(s) 248, 875
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 2 cut(s) 361, 530
BsmAI GTCTC 1 cut(s) 759
BsmFI GGGAC 2 cut(s) 361, 530
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 5 cut(s) 663, 837, 909, 1187, 1392
BsoBI CYCGRG 2 cut(s) 248, 875
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 7 cut(s) 120, 176, 292, 748, 1048, 1075, 1231
BspACI CCGC 1 cut(s) 492
BspANI GGCC 5 cut(s) 663, 837, 909, 1187, 1392
BspCNI CTCAG 3 cut(s) 717, 1065, 1407
BspLI GGNNCC 4 cut(s) 184, 294, 357, 1003
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 2 cut(s) 287, 300
BspT104I TTCGAA 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 911
BsrDI GCAATG 1 cut(s) 620
BssECI CCNNGG 4 cut(s) 288, 512, 1032, 1366
BssMI GATC 7 cut(s) 120, 176, 292, 748, 1048, 1075, 1231
BssSI CACGAG 1 cut(s) 950
BssT1I CCWWGG 2 cut(s) 288, 1032
Bst2BI CACGAG 1 cut(s) 950
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 4 cut(s) 730, 761, 1367, 1424
Bst6I CTCTTC 2 cut(s) 774, 855
BstAFI CTTAAG 1 cut(s) 911
BstBAI YACGTR 1 cut(s) 417
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 5 cut(s) 704, 1052, 1331, 1394, 1449
BstDSI CCRYGG 1 cut(s) 1366
BstEII GGTNACC 1 cut(s) 1325
BstHHI GCGC 1 cut(s) 966
BstKTI GATC 7 cut(s) 123, 179, 295, 751, 1051, 1078, 1234
BstMAI GTCTC 1 cut(s) 759
BstMBI GATC 7 cut(s) 120, 176, 292, 748, 1048, 1075, 1231
BstMWI GCNNNNNNNGC 5 cut(s) 144, 341, 498, 897, 906
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 688
BstPI GGTNACC 1 cut(s) 1325
BstSCI CCNGG 2 cut(s) 511, 601
BstSFI CTRYAG 1 cut(s) 360
BstSNI TACGTA 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 347, 1256, 1424
BstV2I GAAGAC 2 cut(s) 105, 270
BstX2I RGATCY 2 cut(s) 292, 1231
BstYI RGATCY 2 cut(s) 292, 1231
Bsu36I CCTNAGG 1 cut(s) 1394
BsuRI GGCC 5 cut(s) 663, 837, 909, 1187, 1392
BtgI CCRYGG 1 cut(s) 1366
BtgZI GCGATG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 1106
BtsIMutI CAGTG 3 cut(s) 648, 766, 1060
Cac8I GCNNGC 1 cut(s) 528
CfoI GCGC 1 cut(s) 966
Cfr13I GGNCC 1 cut(s) 355
Csp6I GTAC 4 cut(s) 160, 444, 682, 880
CspCI CAANNNNNGTGG 2 cut(s) 1240, 1275
CviAII CATG 6 cut(s) 129, 339, 637, 685, 917, 1301
CviQI GTAC 4 cut(s) 160, 444, 682, 880
DdeI CTNAG 5 cut(s) 704, 1052, 1331, 1394, 1449
DpnI GATC 7 cut(s) 122, 178, 294, 750, 1050, 1077, 1233
DpnII GATC 7 cut(s) 120, 176, 292, 748, 1048, 1075, 1231
DraI TTTAAA 2 cut(s) 739, 1141
EaeI YGGCCR 2 cut(s) 835, 1185
Eam1104I CTCTTC 2 cut(s) 774, 855
EarI CTCTTC 2 cut(s) 774, 855
Eco105I TACGTA 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 288, 1032
Eco147I AGGCCT 2 cut(s) 909, 1392
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 15, 216
Eco81I CCTNAGG 1 cut(s) 1394
Eco88I CYCGRG 2 cut(s) 248, 875
Eco91I GGTNACC 1 cut(s) 1325
EcoO109I RGGNCCY 1 cut(s) 355
EcoO65I GGTNACC 1 cut(s) 1325
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 2 cut(s) 288, 1032
ErhI CCWWGG 2 cut(s) 288, 1032
FaeI CATG 6 cut(s) 132, 342, 640, 688, 920, 1304
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 365, 397
FaqI GGGAC 2 cut(s) 361, 530
FatI CATG 6 cut(s) 128, 338, 636, 684, 916, 1300
Fnu4HI GCNGC 3 cut(s) 336, 1245, 1438
Fsp4HI GCNGC 3 cut(s) 336, 1245, 1438
FspBI CTAG 1 cut(s) 489
GlaI GCGC 1 cut(s) 965
GluI GCNGC 3 cut(s) 336, 1245, 1438
GsuI CTGGAG 2 cut(s) 624, 1220
HaeIII GGCC 5 cut(s) 663, 837, 909, 1187, 1392
HapII CCGG 1 cut(s) 512
HhaI GCGC 1 cut(s) 966
Hin1II CATG 6 cut(s) 132, 342, 640, 688, 920, 1304
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HinfI GANTC 8 cut(s) 57, 214, 320, 508, 557, 716, 1385, 1401
HpaII CCGG 1 cut(s) 512
HphI GGTGA 4 cut(s) 668, 1331, 1337, 1385
Hpy166II GTNNAC 2 cut(s) 1084, 1376
Hpy188I TCNGA 3 cut(s) 219, 1231, 1452
Hpy188III TCNNGA 6 cut(s) 21, 572, 677, 713, 752, 1237
Hpy8I GTNNAC 2 cut(s) 1084, 1376
HpyAV CCTTC 3 cut(s) 102, 569, 633
HpyCH4III ACNGT 4 cut(s) 730, 761, 1367, 1424
HpyCH4IV ACGT 2 cut(s) 416, 1105
HpyCH4V TGCA 8 cut(s) 362, 473, 613, 1040, 1151, 1171, 1313, 1427
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 341, 498, 897, 906
HpyF3I CTNAG 5 cut(s) 704, 1052, 1331, 1394, 1449
HpySE526I ACGT 2 cut(s) 416, 1105
Hsp92II CATG 6 cut(s) 132, 342, 640, 688, 920, 1304
HspAI GCGC 1 cut(s) 964
Kzo9I GATC 7 cut(s) 120, 176, 292, 748, 1048, 1075, 1231
LmnI GCTCC 3 cut(s) 188, 625, 1445
Lsp1109I GCAGC 3 cut(s) 347, 1256, 1424
LweI GCATC 7 cut(s) 23, 482, 513, 795, 1049, 1272, 1300
MaeI CTAG 1 cut(s) 489
MaeII ACGT 2 cut(s) 416, 1105
MaeIII GTNAC 4 cut(s) 694, 1055, 1270, 1325
MalI GATC 7 cut(s) 122, 178, 294, 750, 1050, 1077, 1233
MboI GATC 7 cut(s) 120, 176, 292, 748, 1048, 1075, 1231
MflI RGATCY 2 cut(s) 292, 1231
MhlI GDGCHC 1 cut(s) 622
MlsI TGGCCA 1 cut(s) 1187
MluCI AATT 9 cut(s) 203, 243, 368, 463, 608, 629, 1122, 1136, 1165
MluNI TGGCCA 1 cut(s) 1187
MlyI GAGTC 3 cut(s) 51, 502, 1394
Mox20I TGGCCA 1 cut(s) 1187
MroXI GAANNNNTTC 2 cut(s) 28, 597
MscI TGGCCA 1 cut(s) 1187
MseI TTAA 9 cut(s) 584, 738, 786, 912, 1092, 1110, 1140, 1209, 1418
Msp20I TGGCCA 1 cut(s) 1187
MspCI CTTAAG 1 cut(s) 911
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 513, 603
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 5 cut(s) 144, 341, 498, 897, 906
NciI CCSGG 1 cut(s) 513
NdeII GATC 7 cut(s) 120, 176, 292, 748, 1048, 1075, 1231
NlaIII CATG 6 cut(s) 132, 342, 640, 688, 920, 1304
NlaIV GGNNCC 4 cut(s) 184, 294, 357, 1003
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 3 cut(s) 694, 1055, 1325
NspI RCATGY 1 cut(s) 688
NspV TTCGAA 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 875
PceI AGGCCT 2 cut(s) 909, 1392
PciI ACATGT 1 cut(s) 684
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 116
PctI GAATGC 1 cut(s) 708
PdmI GAANNNNTTC 2 cut(s) 28, 597
PfeI GAWTC 5 cut(s) 214, 320, 557, 716, 1401
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 3 cut(s) 337, 1246, 1439
PleI GAGTC 3 cut(s) 51, 502, 1393
PpsI GAGTC 3 cut(s) 51, 502, 1393
Ppu21I YACGTR 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 355
PscI ACATGT 1 cut(s) 684
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 601
PspEI GGTNACC 1 cut(s) 1325
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 4 cut(s) 184, 294, 357, 1003
PspPI GGNCC 1 cut(s) 355
PspPPI RGGWCCY 1 cut(s) 355
PspXI VCTCGAGB 1 cut(s) 875
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 2 cut(s) 292, 1231
RsaI GTAC 4 cut(s) 161, 445, 683, 881
RsaNI GTAC 4 cut(s) 160, 444, 682, 880
SaqAI TTAA 9 cut(s) 584, 738, 786, 912, 1092, 1110, 1140, 1209, 1418
SatI GCNGC 3 cut(s) 336, 1245, 1438
Sau3AI GATC 7 cut(s) 120, 176, 292, 748, 1048, 1075, 1231
Sau96I GGNCC 1 cut(s) 355
ScaI AGTACT 1 cut(s) 881
SchI GAGTC 3 cut(s) 51, 502, 1394
ScrFI CCNGG 2 cut(s) 513, 603
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 7 cut(s) 23, 482, 513, 795, 1049, 1272, 1300
SfcI CTRYAG 1 cut(s) 360
Sfr274I CTCGAG 1 cut(s) 875
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 875
SmlI CTYRAG 2 cut(s) 875, 911
SmoI CTYRAG 2 cut(s) 875, 911
SnaBI TACGTA 1 cut(s) 417
Sse9I AATT 9 cut(s) 203, 243, 368, 463, 608, 629, 1122, 1136, 1165
SseBI AGGCCT 2 cut(s) 909, 1392
SsiI CCGC 1 cut(s) 492
SspMI CTAG 1 cut(s) 489
StuI AGGCCT 2 cut(s) 909, 1392
StyD4I CCNGG 2 cut(s) 511, 601
StyI CCWWGG 2 cut(s) 288, 1032
TaaI ACNGT 4 cut(s) 730, 761, 1367, 1424
TaiI ACGT 2 cut(s) 419, 1108
TaqI TCGA 9 cut(s) 119, 348, 481, 571, 645, 719, 747, 876, 1308
TasI AATT 9 cut(s) 203, 243, 368, 463, 608, 629, 1122, 1136, 1165
TatI WGTACW 3 cut(s) 159, 681, 879
TfiI GAWTC 5 cut(s) 214, 320, 557, 716, 1401
Tru1I TTAA 9 cut(s) 584, 738, 786, 912, 1092, 1110, 1140, 1209, 1418
Tru9I TTAA 9 cut(s) 584, 738, 786, 912, 1092, 1110, 1140, 1209, 1418
TscAI CASTG 3 cut(s) 655, 766, 1060
TseFI GTSAC 3 cut(s) 694, 1055, 1325
TseI GCWGC 3 cut(s) 335, 1244, 1437
Tsp45I GTSAC 3 cut(s) 694, 1055, 1325
TspDTI ATGAA 5 cut(s) 84, 435, 625, 660, 933
TspRI CASTG 3 cut(s) 655, 766, 1060
Vha464I CTTAAG 1 cut(s) 911
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 4 cut(s) 203, 629, 1136, 1165
XceI RCATGY 1 cut(s) 688
XhoI CTCGAG 1 cut(s) 875
XmnI GAANNNNTTC 2 cut(s) 28, 597
XspI CTAG 1 cut(s) 489
ZrmI AGTACT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.