Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005926

Physical Location & Seq

Genomic Coordinates Forward (+)

21524486 .. 21527044

Gene Structure 2559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G257300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGTTTTCTTGGGGGAAATCCTCGCGGTCTATACACCGGGTTGTTTTTGATGTTCATCGCCTCAGCTCTCGCCCGTTGTTCAACAAATCACAACCTTCCTTTGTCTCATCATCACCATCTTCTTCTTCTCCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTCTTCTTCCTCTTCACTCAGCTCATCAGTAGGTAGGTTTGGCTCTGATGGCAACTACAACGGCAGATCAGGCTCCAGTGAAGATACTTTTAATTTCTTCCTGAGATCGGTTTCTTCAGGGGTTCTGATTCTTGGGACCAGTATAGGCTTTTCTTATCTGGATCCGAACTCCTTTGTGTCTTTTGCTGATAATTGTCCGAAAGAGGCAACGGCATGGGCAATCGGGGATGACCAAAATAAAGCTCAGTTTTCCCTATTTGGAGATTCATATAGGAGAAGAGTTTTCTTCATGTACGAAAAACGGATCAGAGATCAAAGTCCTCCTGAGAAGGTATTTGAGTACTTTGCATCGGTTAAAAACCCAGCAGGAGAGGCGTTTATGACTCCGGCAGACTTGATGAGAGCAGTTGTTCCTGTATTTCCTCCCTCCGAATCAACCCGTGTCAGAGAGGGCTCTTTGAGAGGGGAGAAGGTTCCTGGCCAGTTGCATTGTGCTCCTTCCAAATTCTTTATGCTTTTCGACACCGACGGTGACGGCCTCATTTCTTTTCCCGAGTTCATCTTCTTCGTCACCCTCCTCAGCATCCCCGAGGCAAGCTTTACGGTGGCATTTAAAATGTTTGATCTTGACAACAGCGGAGACATTGATAGGGAGGAGTTTAATAAAGTCATGTCTTTGATGAGATCTCAAAGCAAACAAAACAAGGATGGCCATAGGCTCAAAGTTTCTGTAGATGACGGAGGCCTACTTGAGTACTTCTTTGGCAAAGATGGCAAAAAAAGTCTCAAACATGAAACATTTGTTAAGTTTTTCAGGGATTTACACGATGAAATGTTGCGCTTGGAGTTTTCTCATTATGACTACAAAGAACAAGGAACCATATCAGCTAAAGATTTCGCATTGTCCTTGGTTGCGTCTGCTGATATCAGTGATACAAACAAGTTGCTTGATCGGGTTGACGAATTGGACAACGATCCACGTCTCAAAGACATAAAAATCACATATAAGGAATTTAAAGATTTCGCAGAGCTTCGAAAGAATTTGCAGTCCTTCTCTCTTGCCATTTTCAGTTACGGAGAAGTGAATGGGGTGTTGACAAAAAAAGATCTCCAGAGGGCCGCTTCCCAAGTATGCGGCATCTCTGTTCCTAACAATGTGATTGACATAATATTCCATGTGTTTGATGCAAATGGCGATGGTGATTTGAGTGCAAATGAGTTCGTAAGAGTTTTACAACGACGTGGAGGTGAAGTCTCAGAGACAGGCTTCAGGGGACTTCTATCTTGCTGGTTAAACTGTGCCACTATATTTGGTCAGCAAAGCTGCACCTTTAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

500

Amino Acids

55.68

Weight (kDa)

5.99

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005926)

Species	Orthologous Gene IDs
malus_domestica	MD02G1018100.v1.1 MD15G1162000.v1.1
prunus_persica	Prupe.7G257300_v2.0.a1
pyrus_communis	pycom15g14560
rosa_chinensis	RchiOBHm_Chr2g0087011 RchiOBHm_Chr7g0219711
rosa_laevigata	RLG00000002277 RLG00000015822
rosa_multiflora	Rmu_sc0000902.1_g000013 Rmu_sc0000902.1_g000014 Rmu_sc0010698.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153960 Rroxscaffold_3G00239910 Rroxscaffold_3G00239920 Rroxscaffold_3G00239930
rosa_rugosa	Rorug01G0471500 Rorug07G0186800
rosa_samantha	Rh2AG024300 Rh2BG024800 Rh2CG024900 Rh2DG024800 Rh7AG330900 Rh7BG320600 Rh7CG348200 Rh7DG326300
rosa_wichuraiana	Rw2G001910 Rw2G001960 Rw7G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	25
AciI	CCGC	4 cut(s)	25, 795, 1278, 1293
AclWI	GGATC	4 cut(s)	314, 327, 470, 1127
AcoI	YGGCCR	2 cut(s)	637, 868
AcsI	RAATTY	3 cut(s)	662, 1169, 1198
AcuI	CTGAAG	2 cut(s)	258, 1411
AfaI	GTAC	3 cut(s)	452, 500, 914
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	82
AjiI	CACGTC	2 cut(s)	1139, 1400
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	7 cut(s)	66, 180, 401, 756, 1046, 1189, 1482
AluI	AGCT	7 cut(s)	66, 180, 401, 756, 1046, 1189, 1482
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	6 cut(s)	109, 792, 947, 1145, 1412, 1417
AlwI	GGATC	4 cut(s)	314, 327, 470, 1127
Ama87I	CYCGRG	2 cut(s)	710, 746
AoxI	GGCC	5 cut(s)	637, 694, 868, 901, 1275
ApeKI	GCWGC	1 cut(s)	1482
ApoI	RAATTY	3 cut(s)	662, 1169, 1198
AspLEI	GCGC	1 cut(s)	999
AspS9I	GGNCC	2 cut(s)	294, 1275
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	5 cut(s)	105, 701, 721, 1370, 1418
AsuII	TTCGAA	1 cut(s)	1192
AvaI	CYCGRG	2 cut(s)	710, 746
AvaII	GGWCC	1 cut(s)	294
BalI	TGGCCA	2 cut(s)	639, 870
BamHI	GGATCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	655
BbvCI	CCTCAGC	2 cut(s)	62, 737
BbvI	GCAGC	1 cut(s)	1469
BccI	CCATC	5 cut(s)	124, 200, 860, 923, 1349
BceAI	ACGGC	3 cut(s)	235, 384, 709
BciT130I	CCWGG	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	6 cut(s)	109, 792, 947, 1145, 1412, 1417
BfmI	CTRYAG	1 cut(s)	888
BglII	AGATCT	2 cut(s)	842, 1264
BisI	GCNGC	3 cut(s)	1278, 1294, 1483
BlsI	GCNGC	3 cut(s)	1279, 1295, 1484
BmcAI	AGTACT	2 cut(s)	500, 914
Bme1390I	CCNGG	2 cut(s)	38, 636
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	2 cut(s)	710, 746
BmgBI	CACGTC	2 cut(s)	1139, 1400
BmgT120I	GGNCC	2 cut(s)	294, 1275
BmiI	GGNNCC	5 cut(s)	232, 295, 321, 633, 1036
BmrFI	CCNGG	2 cut(s)	38, 636
BmsI	GCATC	4 cut(s)	515, 750, 1305, 1333
BpmI	CTGGAG	2 cut(s)	217, 1253
Bpu10I	CCTNAGC	2 cut(s)	62, 737
Bpu14I	TTCGAA	1 cut(s)	1192
BpuEI	CTTGAG	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	747, 1065
BsaXI	ACNNNNNCTCC	2 cut(s)	1395, 1425
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	3 cut(s)	234, 297, 640
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	747, 1065
BseGI	GGATG	3 cut(s)	391, 741, 871
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	7 cut(s)	76, 190, 251, 416, 474, 751, 1428
BseNI	ACTGG	3 cut(s)	234, 297, 640
BseRI	GAGGAG	2 cut(s)	725, 827
BseXI	GCAGC	1 cut(s)	1469
BseYI	CCCAGC	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	1468
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	5 cut(s)	639, 696, 870, 903, 1277
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	2 cut(s)	710, 746
BsiSI	CCGG	2 cut(s)	37, 545
BslFI	GGGAC	2 cut(s)	307, 1446
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	6 cut(s)	109, 792, 947, 1145, 1412, 1417
BsmBI	CGTCTC	1 cut(s)	1145
BsmFI	GGGAC	2 cut(s)	307, 1446
BsnI	GGCC	5 cut(s)	639, 696, 870, 903, 1277
BsoBI	CYCGRG	2 cut(s)	710, 746
Bsp119I	TTCGAA	1 cut(s)	1192
Bsp1286I	GDGCHC	2 cut(s)	614, 655
BspACI	CCGC	4 cut(s)	25, 795, 1278, 1293
BspANI	GGCC	5 cut(s)	639, 696, 870, 903, 1277
BspCNI	CTCAG	7 cut(s)	75, 189, 252, 415, 475, 750, 1427
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	5 cut(s)	232, 295, 321, 633, 1036
BspPI	GGATC	4 cut(s)	314, 327, 470, 1127
BspT104I	TTCGAA	1 cut(s)	1192
BsrI	ACTGG	3 cut(s)	234, 297, 640
BssECI	CCNNGG	2 cut(s)	747, 1065
BssT1I	CCWWGG	1 cut(s)	1065
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	3 cut(s)	689, 763, 1457
Bst6I	CTCTTC	4 cut(s)	151, 163, 175, 430
BstBI	TTCGAA	1 cut(s)	1192
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	7 cut(s)	62, 176, 260, 402, 483, 737, 1414
BstF5I	GGATG	3 cut(s)	391, 741, 871
BstFNI	CGCG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	999
BstMAI	GTCTC	6 cut(s)	109, 792, 947, 1145, 1412, 1417
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 228, 530, 930
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	2 cut(s)	36, 634
BstSFI	CTRYAG	1 cut(s)	888
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	1469
BstX2I	RGATCY	3 cut(s)	319, 842, 1264
BstYI	RGATCY	3 cut(s)	319, 842, 1264
BsuRI	GGCC	5 cut(s)	639, 696, 870, 903, 1277
BtgZI	GCGATG	2 cut(s)	41, 1368
BtrI	CACGTC	2 cut(s)	1139, 1400
BtsCI	GGATG	3 cut(s)	391, 741, 871
BtsIMutI	CAGTG	2 cut(s)	241, 1093
Cac8I	GCNNGC	1 cut(s)	754
CfoI	GCGC	1 cut(s)	999
Cfr13I	GGNCC	2 cut(s)	294, 1275
CseI	GACGC	1 cut(s)	1062
Csp6I	GTAC	3 cut(s)	451, 499, 913
CspCI	CAANNNNNGTGG	2 cut(s)	1450, 1485
CviAII	CATG	5 cut(s)	372, 448, 829, 950, 1334
CviQI	GTAC	3 cut(s)	451, 499, 913
DdeI	CTNAG	7 cut(s)	62, 176, 260, 402, 483, 737, 1414
DraI	TTTAAA	2 cut(s)	772, 1174
EaeI	YGGCCR	2 cut(s)	637, 868
Eam1104I	CTCTTC	4 cut(s)	151, 163, 175, 430
EarI	CTCTTC	4 cut(s)	151, 163, 175, 430
Eco130I	CCWWGG	1 cut(s)	1065
Eco147I	AGGCCT	1 cut(s)	903
Eco24I	GRGCYC	1 cut(s)	614
Eco32I	GATATC	1 cut(s)	1084
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	258, 1411
Eco88I	CYCGRG	2 cut(s)	710, 746
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	1084
EcoT14I	CCWWGG	1 cut(s)	1065
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	1065
Esp3I	CGTCTC	1 cut(s)	1145
FaeI	CATG	5 cut(s)	375, 451, 832, 953, 1337
FaqI	GGGAC	2 cut(s)	307, 1446
FatI	CATG	5 cut(s)	371, 447, 828, 949, 1333
Fnu4HI	GCNGC	3 cut(s)	1278, 1294, 1483
FokI	GGATG	3 cut(s)	398, 728, 878
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	3 cut(s)	1278, 1294, 1483
GlaI	GCGC	1 cut(s)	998
GluI	GCNGC	3 cut(s)	1278, 1294, 1483
GsaI	CCCAGC	1 cut(s)	524
GsuI	CTGGAG	2 cut(s)	217, 1253
HaeIII	GGCC	5 cut(s)	639, 696, 870, 903, 1277
HapII	CCGG	2 cut(s)	37, 545
HgaI	GACGC	1 cut(s)	1062
HhaI	GCGC	1 cut(s)	999
Hin1II	CATG	5 cut(s)	375, 451, 832, 953, 1337
Hin6I	GCGC	1 cut(s)	997
HinP1I	GCGC	1 cut(s)	997
HincII	GTYRAC	2 cut(s)	1117, 1254
HindII	GTYRAC	2 cut(s)	1117, 1254
HindIII	AAGCTT	1 cut(s)	754
HinfI	GANTC	4 cut(s)	286, 422, 541, 590
HpaII	CCGG	2 cut(s)	37, 545
HphI	GGTGA	5 cut(s)	105, 701, 721, 1370, 1418
Hpy166II	GTNNAC	2 cut(s)	1117, 1254
Hpy188I	TCNGA	8 cut(s)	205, 285, 324, 357, 467, 589, 605, 1417
Hpy188III	TCNNGA	6 cut(s)	259, 317, 482, 710, 785, 1270
Hpy8I	GTNNAC	2 cut(s)	1117, 1254
Hpy99I	CGWCG	2 cut(s)	689, 1401
HpyAV	CCTTC	6 cut(s)	105, 141, 481, 622, 666, 1219
HpyCH4III	ACNGT	3 cut(s)	689, 763, 1457
HpyCH4IV	ACGT	2 cut(s)	1138, 1399
HpyCH4V	TGCA	6 cut(s)	506, 646, 1204, 1346, 1370, 1485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 228, 530, 930
HpyF3I	CTNAG	7 cut(s)	62, 176, 260, 402, 483, 737, 1414
HpySE526I	ACGT	2 cut(s)	1138, 1399
Hsp92II	CATG	5 cut(s)	375, 451, 832, 953, 1337
HspAI	GCGC	1 cut(s)	997
LmnI	GCTCC	2 cut(s)	236, 658
Lsp1109I	GCAGC	1 cut(s)	1469
LweI	GCATC	4 cut(s)	515, 750, 1305, 1333
MaeII	ACGT	2 cut(s)	1138, 1399
MaeIII	GTNAC	3 cut(s)	689, 727, 1229
MflI	RGATCY	3 cut(s)	319, 842, 1264
MhlI	GDGCHC	2 cut(s)	614, 655
MlsI	TGGCCA	2 cut(s)	639, 870
MluCI	AATT	6 cut(s)	250, 349, 662, 1121, 1169, 1198
MluNI	TGGCCA	2 cut(s)	639, 870
MlyI	GAGTC	1 cut(s)	535
Mox20I	TGGCCA	2 cut(s)	639, 870
MscI	TGGCCA	2 cut(s)	639, 870
MseI	TTAA	7 cut(s)	249, 513, 771, 819, 963, 1173, 1451
Msp20I	TGGCCA	2 cut(s)	639, 870
MspA1I	CMGCKG	1 cut(s)	795
MspI	CCGG	2 cut(s)	37, 545
MspR9I	CCNGG	2 cut(s)	38, 636
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	4 cut(s)	207, 228, 530, 930
NciI	CCSGG	1 cut(s)	38
NlaIII	CATG	5 cut(s)	375, 451, 832, 953, 1337
NlaIV	GGNNCC	5 cut(s)	232, 295, 321, 633, 1036
NmuCI	GTSAC	2 cut(s)	689, 727
NspV	TTCGAA	1 cut(s)	1192
PceI	AGGCCT	1 cut(s)	903
PfeI	GAWTC	3 cut(s)	286, 422, 590
PkrI	GCNGC	3 cut(s)	1279, 1295, 1484
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	634
PspFI	CCCAGC	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	5 cut(s)	232, 295, 321, 633, 1036
PspPI	GGNCC	2 cut(s)	294, 1275
PsuI	RGATCY	3 cut(s)	319, 842, 1264
RsaI	GTAC	3 cut(s)	452, 500, 914
RsaNI	GTAC	3 cut(s)	451, 499, 913
SaqAI	TTAA	7 cut(s)	249, 513, 771, 819, 963, 1173, 1451
SatI	GCNGC	3 cut(s)	1278, 1294, 1483
Sau96I	GGNCC	2 cut(s)	294, 1275
ScaI	AGTACT	2 cut(s)	500, 914
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	38, 636
SduI	GDGCHC	2 cut(s)	614, 655
SfaNI	GCATC	4 cut(s)	515, 750, 1305, 1333
SfcI	CTRYAG	1 cut(s)	888
SfuI	TTCGAA	1 cut(s)	1192
SinI	GGWCC	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
Sse9I	AATT	6 cut(s)	250, 349, 662, 1121, 1169, 1198
SseBI	AGGCCT	1 cut(s)	903
SsiI	CCGC	4 cut(s)	25, 795, 1278, 1293
SspI	AATATT	1 cut(s)	1329
StuI	AGGCCT	1 cut(s)	903
StyD4I	CCNGG	2 cut(s)	36, 634
StyI	CCWWGG	1 cut(s)	1065
TaaI	ACNGT	3 cut(s)	689, 763, 1457
TaiI	ACGT	2 cut(s)	1141, 1402
TaqI	TCGA	2 cut(s)	678, 1192
TasI	AATT	6 cut(s)	250, 349, 662, 1121, 1169, 1198
TatI	WGTACW	2 cut(s)	498, 912
TauI	GCSGC	2 cut(s)	1280, 1296
TfiI	GAWTC	3 cut(s)	286, 422, 590
Tru1I	TTAA	7 cut(s)	249, 513, 771, 819, 963, 1173, 1451
Tru9I	TTAA	7 cut(s)	249, 513, 771, 819, 963, 1173, 1451
TscAI	CASTG	2 cut(s)	241, 1093
TseFI	GTSAC	2 cut(s)	689, 727
TseI	GCWGC	1 cut(s)	1482
Tsp45I	GTSAC	2 cut(s)	689, 727
TspDTI	ATGAA	6 cut(s)	44, 414, 436, 706, 966, 1002
TspGWI	ACGGA	3 cut(s)	475, 912, 1248
TspRI	CASTG	2 cut(s)	241, 1093
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	3 cut(s)	662, 1169, 1198
ZrmI	AGTACT	2 cut(s)	500, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.