RchiOBHm_Chr7g0219711

Calcium uptake protein 1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
38351356 .. 38353452
2097 bp
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UTR
Exon/CDS
Intron
PRQ19665

Sequence Viewer

Length: 1458 bp
ATGTTTTCTTGGGCATCTTCAAGAAGATCCTCAGGGGTTGTTTTGGGTGTTCAACGACTCGGCTCTTGCACATTGTTCAGTAAATCACAACCCTCATCATCGCCATCTTCGTCTTCTTCGATCAGCTCATCATGTGGTGGCACTTTTGGCTGTAACAATGAGTACAATTACAAGAGTAGATCAGGCTCCTCTAATAAGCGTAGTACATTTAATTTGATTCAGAGGTCAGTTTCTTCAGGGGTTCTAATTCTCGGGTCAAGCATAGGCTATTCTTATTGGTCTTCTGCTTCCTTGGATCCAAATGCCTCTGTTTGTTTTGCTGATTCCAAAGAGGAGGCAGCATGGGCAATCGAGCAGGACCCAGAACAATTCAAGTCCCTCTTTTCAAATCTTGTTTCAGATACATTTAGGAGAAAGAAGTTCTTTACGTATGAAAAAAAGATAAGAGAGCGAAGTACCCCTGAAAAGATTTTCAATTACTTTGCATCAGTTCGAACCCCTAGCGGAGAGTGCTTTATGACGCCGGGGGACTTGATGCGAGCTGTTGTTCCTGTGTTTCCTCCCTATGATTCAAATCGGGTTCGAGAAGGCTCTTTAAGAGGGGAAAATGTTCCTGGAGAATTGCAATGTGCTCCTTCTAAATTCTTCATGCTTTTCGATACTGATGGTGATGGCCTCATTTCATTTCAAGAGTACATGTTTTTCGTCACTCTCCTCAGCATTCCTGAATCGAGTTTTACTGTGGCTTTTAAAATGTTCGATCTTGACAACAGTGGAGACATTGATAAGGAAGAGTTTAACAGAGTTATGGCATTGATGCGAAATCACAACAATAAAAACAAGGACGGCCACAGGGTCAAAGTTGGTGTAGAAGAGGGAGGCATACTCGAGTACTTCTTCGGCAAAGACGGCAAAAAAGGCCTCAAGCATGAAAGATTTGTTCAGTTTTTCAGGGATTTACACGAGGAAATGTTGCGCTTGGAATTTGCTCATTATGACTACAAATCAAAAGGAACCATAACAGCTAAAGATTTTGCCTTGTCCTTGGTTGCATCTGCTGATCTCAGTGTCTTATACAAGTTGCTTGATCGTGTTGACGATATTAACAACGCCCCACGTCTTAACAACATACAAATTACATACAAGGAATTTAAAGATTTTGCAGAGCTACGCAAGAATCTGCGGTCTTTCTCTTTGGCCATTTTCAGCTACGGCGAGGTTAATGGGGTTTTGACAAAATCAGATCTCCAGAGAGCAGCTTCCAAAGTATGTGGCATCAATGTTTCAGACAATGTGATGGACATAATCTTCCATGTATTTGATGCAAACGGTGATGGTGATCTAAGTGCGAACGAGTTTGTCAAAGTTTTACAGAACCGTGGAGGTGAACCCGTAGAGTCAGGCCTCAGTGGACTCCTAGCTTGCTTCTTAAACTGTGCAAGTAAAAGCTGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

54.08

Weight (kDa)

7.0

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_5 PF13202 249 - 270 2.6e-06 EF hand
EF-hand_8 PF13833 408 - 459 2.8e-08 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 504, 1183
AclWI GGATC 3 cut(s) 21, 290, 303
AcoI YGGCCR 2 cut(s) 847, 1197
AcsI RAATTY 3 cut(s) 641, 983, 1148
AcuI CTGAAG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 5 cut(s) 164, 205, 457, 695, 893
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 7 cut(s) 21, 53, 373, 387, 475, 573, 689
AjiI CACGTC 1 cut(s) 1118
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 8 cut(s) 126, 542, 1025, 1168, 1209, 1259, 1421, 1449
AluI AGCT 8 cut(s) 126, 542, 1025, 1168, 1209, 1259, 1421, 1449
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 1 cut(s) 771
AlwI GGATC 3 cut(s) 21, 290, 303
Ama87I CYCGRG 2 cut(s) 251, 887
AoxI GGCC 5 cut(s) 673, 847, 919, 1197, 1402
ApeKI GCWGC 3 cut(s) 338, 1256, 1449
ApoI RAATTY 3 cut(s) 641, 983, 1148
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 1 cut(s) 978
AspS9I GGNCC 1 cut(s) 358
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 4 cut(s) 680, 1343, 1349, 1397
AsuII TTCGAA 1 cut(s) 493
AvaI CYCGRG 2 cut(s) 251, 887
AvaII GGWCC 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 31
BalI TGGCCA 1 cut(s) 1199
BamHI GGATCC 1 cut(s) 295
BauI CACGAG 1 cut(s) 962
BbsI GAAGAC 2 cut(s) 105, 273
Bbv12I GWGCWC 1 cut(s) 634
BbvCI CCTCAGC 1 cut(s) 716
BbvI GCAGC 3 cut(s) 350, 1268, 1436
BccI CCATC 5 cut(s) 112, 659, 665, 1291, 1328
BceAI ACGGC 3 cut(s) 862, 925, 1228
BciT130I CCWGG 1 cut(s) 615
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 771
BfaI CTAG 2 cut(s) 501, 1418
BglII AGATCT 1 cut(s) 1243
BisI GCNGC 3 cut(s) 339, 1257, 1450
BlsI GCNGC 3 cut(s) 340, 1258, 1451
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 2 cut(s) 525, 615
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 2 cut(s) 251, 887
BmgBI CACGTC 1 cut(s) 1118
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 4 cut(s) 187, 297, 360, 1015
BmrFI CCNGG 2 cut(s) 525, 615
BmsI GCATC 7 cut(s) 23, 494, 525, 807, 1061, 1284, 1312
BpiI GAAGAC 2 cut(s) 105, 273
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 2 cut(s) 636, 1232
Bpu10I CCTNAGC 1 cut(s) 716
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 429
BsaBI GATNNNNATC 2 cut(s) 573, 1338
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 4 cut(s) 291, 524, 1044, 1378
Bse21I CCTNAGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 632
Bse8I GATNNNNATC 2 cut(s) 573, 1338
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 4 cut(s) 291, 524, 1044, 1378
BseJI GATNNNNATC 2 cut(s) 573, 1338
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 4 cut(s) 45, 730, 1078, 1420
BseRI GAGGAG 3 cut(s) 178, 347, 704
BseXI GCAGC 3 cut(s) 350, 1268, 1436
BshFI GGCC 5 cut(s) 675, 849, 921, 1199, 1404
BsiHKAI GWGCWC 1 cut(s) 634
BsiHKCI CYCGRG 2 cut(s) 251, 887
BsiSI CCGG 1 cut(s) 524
BslFI GGGAC 2 cut(s) 361, 542
BsmAI GTCTC 1 cut(s) 771
BsmFI GGGAC 2 cut(s) 361, 542
BsmI GAATGC 1 cut(s) 720
BsnI GGCC 5 cut(s) 675, 849, 921, 1199, 1404
BsoBI CYCGRG 2 cut(s) 251, 887
Bsp119I TTCGAA 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 634
Bsp143I GATC 9 cut(s) 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339
BspACI CCGC 2 cut(s) 504, 1183
BspANI GGCC 5 cut(s) 675, 849, 921, 1199, 1404
BspCNI CTCAG 4 cut(s) 44, 729, 1077, 1419
BspLI GGNNCC 4 cut(s) 187, 297, 360, 1015
BspPI GGATC 3 cut(s) 21, 290, 303
BspT104I TTCGAA 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 291, 524, 1044, 1378
BssMI GATC 9 cut(s) 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339
BssNI GRCGYC 1 cut(s) 521
BssSI CACGAG 1 cut(s) 962
BssT1I CCWWGG 2 cut(s) 291, 1044
Bst2BI CACGAG 1 cut(s) 962
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 5 cut(s) 742, 773, 1331, 1379, 1436
Bst6I CTCTTC 2 cut(s) 786, 867
BstACI GRCGYC 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 429
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 2 cut(s) 540, 1423
BstDEI CTNAG 5 cut(s) 31, 716, 1064, 1343, 1406
BstDSI CCRYGG 1 cut(s) 1378
BstHHI GCGC 1 cut(s) 978
BstKTI GATC 9 cut(s) 29, 123, 182, 298, 763, 1063, 1090, 1246, 1342
BstMAI GTCTC 1 cut(s) 771
BstMBI GATC 9 cut(s) 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339
BstMWI GCNNNNNNNGC 5 cut(s) 147, 344, 510, 909, 918
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 2 cut(s) 523, 613
BstSNI TACGTA 1 cut(s) 429
BstV1I GCAGC 3 cut(s) 350, 1268, 1436
BstV2I GAAGAC 2 cut(s) 105, 273
BstX2I RGATCY 3 cut(s) 26, 295, 1243
BstYI RGATCY 3 cut(s) 26, 295, 1243
Bsu36I CCTNAGG 1 cut(s) 31
BsuRI GGCC 5 cut(s) 675, 849, 921, 1199, 1404
BtgI CCRYGG 1 cut(s) 1378
BtgZI GCGATG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 1118
BtsIMutI CAGTG 3 cut(s) 778, 1072, 1414
Cac8I GCNNGC 2 cut(s) 540, 1423
CfoI GCGC 1 cut(s) 978
Cfr13I GGNCC 1 cut(s) 358
CseI GACGC 1 cut(s) 529
Csp6I GTAC 5 cut(s) 163, 204, 456, 694, 892
CspCI CAANNNNNGTGG 2 cut(s) 1252, 1287
CviAII CATG 6 cut(s) 132, 342, 649, 697, 929, 1313
CviQI GTAC 5 cut(s) 163, 204, 456, 694, 892
DdeI CTNAG 5 cut(s) 31, 716, 1064, 1343, 1406
DpnI GATC 9 cut(s) 28, 122, 181, 297, 762, 1062, 1089, 1245, 1341
DpnII GATC 9 cut(s) 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339
DraI TTTAAA 2 cut(s) 751, 1153
EaeI YGGCCR 2 cut(s) 847, 1197
Eam1104I CTCTTC 2 cut(s) 786, 867
EarI CTCTTC 2 cut(s) 786, 867
Eco105I TACGTA 1 cut(s) 429
Eco130I CCWWGG 2 cut(s) 291, 1044
Eco147I AGGCCT 2 cut(s) 921, 1404
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 31
Eco88I CYCGRG 2 cut(s) 251, 887
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 291, 1044
ErhI CCWWGG 2 cut(s) 291, 1044
FaeI CATG 6 cut(s) 135, 345, 652, 700, 932, 1316
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 407, 439
FaqI GGGAC 2 cut(s) 361, 542
FatI CATG 6 cut(s) 131, 341, 648, 696, 928, 1312
Fnu4HI GCNGC 3 cut(s) 339, 1257, 1450
Fsp4HI GCNGC 3 cut(s) 339, 1257, 1450
FspBI CTAG 2 cut(s) 501, 1418
GlaI GCGC 1 cut(s) 977
GluI GCNGC 3 cut(s) 339, 1257, 1450
GsuI CTGGAG 2 cut(s) 636, 1232
HaeIII GGCC 5 cut(s) 675, 849, 921, 1199, 1404
HapII CCGG 1 cut(s) 524
HgaI GACGC 1 cut(s) 529
HhaI GCGC 1 cut(s) 978
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 6 cut(s) 135, 345, 652, 700, 932, 1316
Hin6I GCGC 1 cut(s) 976
HinP1I GCGC 1 cut(s) 976
HincII GTYRAC 1 cut(s) 1096
HindII GTYRAC 1 cut(s) 1096
HinfI GANTC 8 cut(s) 57, 217, 323, 569, 728, 1177, 1397, 1413
HpaII CCGG 1 cut(s) 524
HphI GGTGA 4 cut(s) 680, 1343, 1349, 1397
Hpy166II GTNNAC 3 cut(s) 1096, 1388, 1412
Hpy188I TCNGA 4 cut(s) 222, 400, 1243, 1288
Hpy188III TCNNGA 6 cut(s) 21, 584, 689, 725, 764, 1249
Hpy8I GTNNAC 3 cut(s) 1096, 1388, 1412
HpyAV CCTTC 2 cut(s) 581, 645
HpyCH4III ACNGT 5 cut(s) 742, 773, 1331, 1379, 1436
HpyCH4IV ACGT 2 cut(s) 428, 1117
HpyCH4V TGCA 7 cut(s) 69, 485, 625, 1052, 1163, 1325, 1439
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 344, 510, 909, 918
HpyF3I CTNAG 5 cut(s) 31, 716, 1064, 1343, 1406
HpySE526I ACGT 2 cut(s) 428, 1117
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 6 cut(s) 135, 345, 652, 700, 932, 1316
HspAI GCGC 1 cut(s) 976
Kzo9I GATC 9 cut(s) 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339
LmnI GCTCC 3 cut(s) 191, 637, 1457
Lsp1109I GCAGC 3 cut(s) 350, 1268, 1436
LweI GCATC 7 cut(s) 23, 494, 525, 807, 1061, 1284, 1312
MaeI CTAG 2 cut(s) 501, 1418
MaeII ACGT 2 cut(s) 428, 1117
MaeIII GTNAC 2 cut(s) 152, 706
MalI GATC 9 cut(s) 28, 122, 181, 297, 762, 1062, 1089, 1245, 1341
MboI GATC 9 cut(s) 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339
MflI RGATCY 3 cut(s) 26, 295, 1243
MhlI GDGCHC 1 cut(s) 634
MlsI TGGCCA 1 cut(s) 1199
MluNI TGGCCA 1 cut(s) 1199
MlyI GAGTC 3 cut(s) 51, 1406, 1407
Mox20I TGGCCA 1 cut(s) 1199
MroXI GAANNNNTTC 1 cut(s) 609
MscI TGGCCA 1 cut(s) 1199
MseI TTAA 9 cut(s) 210, 596, 750, 798, 1104, 1122, 1152, 1221, 1430
Msp20I TGGCCA 1 cut(s) 1199
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 2 cut(s) 525, 615
Mva1269I GAATGC 1 cut(s) 720
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 5 cut(s) 147, 344, 510, 909, 918
NciI CCSGG 1 cut(s) 525
NdeII GATC 9 cut(s) 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339
NlaIII CATG 6 cut(s) 135, 345, 652, 700, 932, 1316
NlaIV GGNNCC 4 cut(s) 187, 297, 360, 1015
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 706
NspI RCATGY 1 cut(s) 700
NspV TTCGAA 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 887
PceI AGGCCT 2 cut(s) 921, 1404
PciI ACATGT 1 cut(s) 696
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 116
PctI GAATGC 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 5 cut(s) 217, 323, 569, 728, 1177
PfoI TCCNGGA 1 cut(s) 613
PkrI GCNGC 3 cut(s) 340, 1258, 1451
PleI GAGTC 3 cut(s) 51, 1405, 1407
PpsI GAGTC 3 cut(s) 51, 1405, 1407
Ppu21I YACGTR 1 cut(s) 429
PpuMI RGGWCCY 1 cut(s) 358
PscI ACATGT 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 4 cut(s) 187, 297, 360, 1015
PspPI GGNCC 1 cut(s) 358
PspPPI RGGWCCY 1 cut(s) 358
PspXI VCTCGAGB 1 cut(s) 887
PsuI RGATCY 3 cut(s) 26, 295, 1243
RsaI GTAC 5 cut(s) 164, 205, 457, 695, 893
RsaNI GTAC 5 cut(s) 163, 204, 456, 694, 892
SaqAI TTAA 9 cut(s) 210, 596, 750, 798, 1104, 1122, 1152, 1221, 1430
SatI GCNGC 3 cut(s) 339, 1257, 1450
Sau3AI GATC 9 cut(s) 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339
Sau96I GGNCC 1 cut(s) 358
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 3 cut(s) 51, 1406, 1407
ScrFI CCNGG 2 cut(s) 525, 615
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 7 cut(s) 23, 494, 525, 807, 1061, 1284, 1312
Sfr274I CTCGAG 1 cut(s) 887
SfuI TTCGAA 1 cut(s) 493
SinI GGWCC 1 cut(s) 358
SlaI CTCGAG 1 cut(s) 887
SmlI CTYRAG 2 cut(s) 887, 923
SmoI CTYRAG 2 cut(s) 887, 923
SnaBI TACGTA 1 cut(s) 429
SseBI AGGCCT 2 cut(s) 921, 1404
SsiI CCGC 2 cut(s) 504, 1183
SspMI CTAG 2 cut(s) 501, 1418
StuI AGGCCT 2 cut(s) 921, 1404
StyD4I CCNGG 2 cut(s) 523, 613
StyI CCWWGG 2 cut(s) 291, 1044
TaaI ACNGT 5 cut(s) 742, 773, 1331, 1379, 1436
TaiI ACGT 2 cut(s) 431, 1120
TaqI TCGA 8 cut(s) 119, 351, 493, 583, 657, 731, 759, 888
TatI WGTACW 4 cut(s) 162, 203, 693, 891
TfiI GAWTC 5 cut(s) 217, 323, 569, 728, 1177
Tru1I TTAA 9 cut(s) 210, 596, 750, 798, 1104, 1122, 1152, 1221, 1430
Tru9I TTAA 9 cut(s) 210, 596, 750, 798, 1104, 1122, 1152, 1221, 1430
TscAI CASTG 3 cut(s) 778, 1072, 1414
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 3 cut(s) 338, 1256, 1449
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 4 cut(s) 447, 637, 672, 945
TspRI CASTG 3 cut(s) 778, 1072, 1414
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 3 cut(s) 641, 983, 1148
XceI RCATGY 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 887
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 2 cut(s) 501, 1418
ZrmI AGTACT 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.