Calcium uptake protein 1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD02G1018100.v1.1 MD15G1162000.v1.1 |
| prunus_persica | Prupe.7G257300_v2.0.a1 |
| pyrus_communis | pycom15g14560 |
| rosa_chinensis | RchiOBHm_Chr2g0087011 RchiOBHm_Chr7g0219711 |
| rosa_laevigata | RLG00000002277 RLG00000015822 |
| rosa_multiflora | Rmu_sc0000902.1_g000013 Rmu_sc0000902.1_g000014 Rmu_sc0010698.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00153960 Rroxscaffold_3G00239910 Rroxscaffold_3G00239920 Rroxscaffold_3G00239930 |
| rosa_rugosa | Rorug01G0471500 Rorug07G0186800 |
| rosa_samantha | Rh2AG024300 Rh2BG024800 Rh2CG024900 Rh2DG024800 Rh7AG330900 Rh7BG320600 Rh7CG348200 Rh7DG326300 |
| rosa_wichuraiana | Rw2G001910 Rw2G001960 Rw7G027850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 504, 1183 |
| AclWI | GGATC | 3 cut(s) | 21, 290, 303 |
| AcoI | YGGCCR | 2 cut(s) | 847, 1197 |
| AcsI | RAATTY | 3 cut(s) | 641, 983, 1148 |
| AcuI | CTGAAG | 1 cut(s) | 219 |
| AcyI | GRCGYC | 1 cut(s) | 521 |
| AfaI | GTAC | 5 cut(s) | 164, 205, 457, 695, 893 |
| AflIII | ACRYGT | 1 cut(s) | 696 |
| AgsI | TTSAA | 7 cut(s) | 21, 53, 373, 387, 475, 573, 689 |
| AjiI | CACGTC | 1 cut(s) | 1118 |
| AjnI | CCWGG | 1 cut(s) | 613 |
| AluBI | AGCT | 8 cut(s) | 126, 542, 1025, 1168, 1209, 1259, 1421, 1449 |
| AluI | AGCT | 8 cut(s) | 126, 542, 1025, 1168, 1209, 1259, 1421, 1449 |
| Alw21I | GWGCWC | 1 cut(s) | 634 |
| Alw26I | GTCTC | 1 cut(s) | 771 |
| AlwI | GGATC | 3 cut(s) | 21, 290, 303 |
| Ama87I | CYCGRG | 2 cut(s) | 251, 887 |
| AoxI | GGCC | 5 cut(s) | 673, 847, 919, 1197, 1402 |
| ApeKI | GCWGC | 3 cut(s) | 338, 1256, 1449 |
| ApoI | RAATTY | 3 cut(s) | 641, 983, 1148 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 609 |
| AspLEI | GCGC | 1 cut(s) | 978 |
| AspS9I | GGNCC | 1 cut(s) | 358 |
| AsuC2I | CCSGG | 1 cut(s) | 525 |
| AsuHPI | GGTGA | 4 cut(s) | 680, 1343, 1349, 1397 |
| AsuII | TTCGAA | 1 cut(s) | 493 |
| AvaI | CYCGRG | 2 cut(s) | 251, 887 |
| AvaII | GGWCC | 1 cut(s) | 358 |
| AxyI | CCTNAGG | 1 cut(s) | 31 |
| BalI | TGGCCA | 1 cut(s) | 1199 |
| BamHI | GGATCC | 1 cut(s) | 295 |
| BauI | CACGAG | 1 cut(s) | 962 |
| BbsI | GAAGAC | 2 cut(s) | 105, 273 |
| Bbv12I | GWGCWC | 1 cut(s) | 634 |
| BbvCI | CCTCAGC | 1 cut(s) | 716 |
| BbvI | GCAGC | 3 cut(s) | 350, 1268, 1436 |
| BccI | CCATC | 5 cut(s) | 112, 659, 665, 1291, 1328 |
| BceAI | ACGGC | 3 cut(s) | 862, 925, 1228 |
| BciT130I | CCWGG | 1 cut(s) | 615 |
| BcnI | CCSGG | 1 cut(s) | 525 |
| BcoDI | GTCTC | 1 cut(s) | 771 |
| BfaI | CTAG | 2 cut(s) | 501, 1418 |
| BglII | AGATCT | 1 cut(s) | 1243 |
| BisI | GCNGC | 3 cut(s) | 339, 1257, 1450 |
| BlsI | GCNGC | 3 cut(s) | 340, 1258, 1451 |
| BmcAI | AGTACT | 1 cut(s) | 893 |
| Bme1390I | CCNGG | 2 cut(s) | 525, 615 |
| Bme18I | GGWCC | 1 cut(s) | 358 |
| BmeT110I | CYCGRG | 2 cut(s) | 251, 887 |
| BmgBI | CACGTC | 1 cut(s) | 1118 |
| BmgT120I | GGNCC | 1 cut(s) | 358 |
| BmiI | GGNNCC | 4 cut(s) | 187, 297, 360, 1015 |
| BmrFI | CCNGG | 2 cut(s) | 525, 615 |
| BmsI | GCATC | 7 cut(s) | 23, 494, 525, 807, 1061, 1284, 1312 |
| BpiI | GAAGAC | 2 cut(s) | 105, 273 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 870, 902 |
| BpmI | CTGGAG | 2 cut(s) | 636, 1232 |
| Bpu10I | CCTNAGC | 1 cut(s) | 716 |
| Bpu14I | TTCGAA | 1 cut(s) | 493 |
| BpuEI | CTTGAG | 1 cut(s) | 908 |
| BpuMI | CCSGG | 1 cut(s) | 525 |
| BsaAI | YACGTR | 1 cut(s) | 429 |
| BsaBI | GATNNNNATC | 2 cut(s) | 573, 1338 |
| BsaHI | GRCGYC | 1 cut(s) | 521 |
| BsaJI | CCNNGG | 4 cut(s) | 291, 524, 1044, 1378 |
| Bse21I | CCTNAGG | 1 cut(s) | 31 |
| Bse3DI | GCAATG | 1 cut(s) | 632 |
| Bse8I | GATNNNNATC | 2 cut(s) | 573, 1338 |
| BseBI | CCWGG | 1 cut(s) | 615 |
| BseDI | CCNNGG | 4 cut(s) | 291, 524, 1044, 1378 |
| BseJI | GATNNNNATC | 2 cut(s) | 573, 1338 |
| BseMI | GCAATG | 1 cut(s) | 632 |
| BseMII | CTCAG | 4 cut(s) | 45, 730, 1078, 1420 |
| BseRI | GAGGAG | 3 cut(s) | 178, 347, 704 |
| BseXI | GCAGC | 3 cut(s) | 350, 1268, 1436 |
| BshFI | GGCC | 5 cut(s) | 675, 849, 921, 1199, 1404 |
| BsiHKAI | GWGCWC | 1 cut(s) | 634 |
| BsiHKCI | CYCGRG | 2 cut(s) | 251, 887 |
| BsiSI | CCGG | 1 cut(s) | 524 |
| BslFI | GGGAC | 2 cut(s) | 361, 542 |
| BsmAI | GTCTC | 1 cut(s) | 771 |
| BsmFI | GGGAC | 2 cut(s) | 361, 542 |
| BsmI | GAATGC | 1 cut(s) | 720 |
| BsnI | GGCC | 5 cut(s) | 675, 849, 921, 1199, 1404 |
| BsoBI | CYCGRG | 2 cut(s) | 251, 887 |
| Bsp119I | TTCGAA | 1 cut(s) | 493 |
| Bsp1286I | GDGCHC | 1 cut(s) | 634 |
| Bsp143I | GATC | 9 cut(s) | 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339 |
| BspACI | CCGC | 2 cut(s) | 504, 1183 |
| BspANI | GGCC | 5 cut(s) | 675, 849, 921, 1199, 1404 |
| BspCNI | CTCAG | 4 cut(s) | 44, 729, 1077, 1419 |
| BspLI | GGNNCC | 4 cut(s) | 187, 297, 360, 1015 |
| BspPI | GGATC | 3 cut(s) | 21, 290, 303 |
| BspT104I | TTCGAA | 1 cut(s) | 493 |
| BsrDI | GCAATG | 1 cut(s) | 632 |
| BssECI | CCNNGG | 4 cut(s) | 291, 524, 1044, 1378 |
| BssMI | GATC | 9 cut(s) | 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339 |
| BssNI | GRCGYC | 1 cut(s) | 521 |
| BssSI | CACGAG | 1 cut(s) | 962 |
| BssT1I | CCWWGG | 2 cut(s) | 291, 1044 |
| Bst2BI | CACGAG | 1 cut(s) | 962 |
| Bst2UI | CCWGG | 1 cut(s) | 615 |
| Bst4CI | ACNGT | 5 cut(s) | 742, 773, 1331, 1379, 1436 |
| Bst6I | CTCTTC | 2 cut(s) | 786, 867 |
| BstACI | GRCGYC | 1 cut(s) | 521 |
| BstBAI | YACGTR | 1 cut(s) | 429 |
| BstBI | TTCGAA | 1 cut(s) | 493 |
| BstC8I | GCNNGC | 2 cut(s) | 540, 1423 |
| BstDEI | CTNAG | 5 cut(s) | 31, 716, 1064, 1343, 1406 |
| BstDSI | CCRYGG | 1 cut(s) | 1378 |
| BstHHI | GCGC | 1 cut(s) | 978 |
| BstKTI | GATC | 9 cut(s) | 29, 123, 182, 298, 763, 1063, 1090, 1246, 1342 |
| BstMAI | GTCTC | 1 cut(s) | 771 |
| BstMBI | GATC | 9 cut(s) | 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 147, 344, 510, 909, 918 |
| BstNI | CCWGG | 1 cut(s) | 615 |
| BstNSI | RCATGY | 1 cut(s) | 700 |
| BstSCI | CCNGG | 2 cut(s) | 523, 613 |
| BstSNI | TACGTA | 1 cut(s) | 429 |
| BstV1I | GCAGC | 3 cut(s) | 350, 1268, 1436 |
| BstV2I | GAAGAC | 2 cut(s) | 105, 273 |
| BstX2I | RGATCY | 3 cut(s) | 26, 295, 1243 |
| BstYI | RGATCY | 3 cut(s) | 26, 295, 1243 |
| Bsu36I | CCTNAGG | 1 cut(s) | 31 |
| BsuRI | GGCC | 5 cut(s) | 675, 849, 921, 1199, 1404 |
| BtgI | CCRYGG | 1 cut(s) | 1378 |
| BtgZI | GCGATG | 1 cut(s) | 84 |
| BtrI | CACGTC | 1 cut(s) | 1118 |
| BtsIMutI | CAGTG | 3 cut(s) | 778, 1072, 1414 |
| Cac8I | GCNNGC | 2 cut(s) | 540, 1423 |
| CfoI | GCGC | 1 cut(s) | 978 |
| Cfr13I | GGNCC | 1 cut(s) | 358 |
| CseI | GACGC | 1 cut(s) | 529 |
| Csp6I | GTAC | 5 cut(s) | 163, 204, 456, 694, 892 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1252, 1287 |
| CviAII | CATG | 6 cut(s) | 132, 342, 649, 697, 929, 1313 |
| CviQI | GTAC | 5 cut(s) | 163, 204, 456, 694, 892 |
| DdeI | CTNAG | 5 cut(s) | 31, 716, 1064, 1343, 1406 |
| DpnI | GATC | 9 cut(s) | 28, 122, 181, 297, 762, 1062, 1089, 1245, 1341 |
| DpnII | GATC | 9 cut(s) | 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339 |
| DraI | TTTAAA | 2 cut(s) | 751, 1153 |
| EaeI | YGGCCR | 2 cut(s) | 847, 1197 |
| Eam1104I | CTCTTC | 2 cut(s) | 786, 867 |
| EarI | CTCTTC | 2 cut(s) | 786, 867 |
| Eco105I | TACGTA | 1 cut(s) | 429 |
| Eco130I | CCWWGG | 2 cut(s) | 291, 1044 |
| Eco147I | AGGCCT | 2 cut(s) | 921, 1404 |
| Eco47I | GGWCC | 1 cut(s) | 358 |
| Eco57I | CTGAAG | 1 cut(s) | 219 |
| Eco81I | CCTNAGG | 1 cut(s) | 31 |
| Eco88I | CYCGRG | 2 cut(s) | 251, 887 |
| EcoO109I | RGGNCCY | 1 cut(s) | 358 |
| EcoRII | CCWGG | 1 cut(s) | 613 |
| EcoT14I | CCWWGG | 2 cut(s) | 291, 1044 |
| ErhI | CCWWGG | 2 cut(s) | 291, 1044 |
| FaeI | CATG | 6 cut(s) | 135, 345, 652, 700, 932, 1316 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 365, 397, 407, 439 |
| FaqI | GGGAC | 2 cut(s) | 361, 542 |
| FatI | CATG | 6 cut(s) | 131, 341, 648, 696, 928, 1312 |
| Fnu4HI | GCNGC | 3 cut(s) | 339, 1257, 1450 |
| Fsp4HI | GCNGC | 3 cut(s) | 339, 1257, 1450 |
| FspBI | CTAG | 2 cut(s) | 501, 1418 |
| GlaI | GCGC | 1 cut(s) | 977 |
| GluI | GCNGC | 3 cut(s) | 339, 1257, 1450 |
| GsuI | CTGGAG | 2 cut(s) | 636, 1232 |
| HaeIII | GGCC | 5 cut(s) | 675, 849, 921, 1199, 1404 |
| HapII | CCGG | 1 cut(s) | 524 |
| HgaI | GACGC | 1 cut(s) | 529 |
| HhaI | GCGC | 1 cut(s) | 978 |
| Hin1I | GRCGYC | 1 cut(s) | 521 |
| Hin1II | CATG | 6 cut(s) | 135, 345, 652, 700, 932, 1316 |
| Hin6I | GCGC | 1 cut(s) | 976 |
| HinP1I | GCGC | 1 cut(s) | 976 |
| HincII | GTYRAC | 1 cut(s) | 1096 |
| HindII | GTYRAC | 1 cut(s) | 1096 |
| HinfI | GANTC | 8 cut(s) | 57, 217, 323, 569, 728, 1177, 1397, 1413 |
| HpaII | CCGG | 1 cut(s) | 524 |
| HphI | GGTGA | 4 cut(s) | 680, 1343, 1349, 1397 |
| Hpy166II | GTNNAC | 3 cut(s) | 1096, 1388, 1412 |
| Hpy188I | TCNGA | 4 cut(s) | 222, 400, 1243, 1288 |
| Hpy188III | TCNNGA | 6 cut(s) | 21, 584, 689, 725, 764, 1249 |
| Hpy8I | GTNNAC | 3 cut(s) | 1096, 1388, 1412 |
| HpyAV | CCTTC | 2 cut(s) | 581, 645 |
| HpyCH4III | ACNGT | 5 cut(s) | 742, 773, 1331, 1379, 1436 |
| HpyCH4IV | ACGT | 2 cut(s) | 428, 1117 |
| HpyCH4V | TGCA | 7 cut(s) | 69, 485, 625, 1052, 1163, 1325, 1439 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 147, 344, 510, 909, 918 |
| HpyF3I | CTNAG | 5 cut(s) | 31, 716, 1064, 1343, 1406 |
| HpySE526I | ACGT | 2 cut(s) | 428, 1117 |
| Hsp92I | GRCGYC | 1 cut(s) | 521 |
| Hsp92II | CATG | 6 cut(s) | 135, 345, 652, 700, 932, 1316 |
| HspAI | GCGC | 1 cut(s) | 976 |
| Kzo9I | GATC | 9 cut(s) | 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339 |
| LmnI | GCTCC | 3 cut(s) | 191, 637, 1457 |
| Lsp1109I | GCAGC | 3 cut(s) | 350, 1268, 1436 |
| LweI | GCATC | 7 cut(s) | 23, 494, 525, 807, 1061, 1284, 1312 |
| MaeI | CTAG | 2 cut(s) | 501, 1418 |
| MaeII | ACGT | 2 cut(s) | 428, 1117 |
| MaeIII | GTNAC | 2 cut(s) | 152, 706 |
| MalI | GATC | 9 cut(s) | 28, 122, 181, 297, 762, 1062, 1089, 1245, 1341 |
| MboI | GATC | 9 cut(s) | 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339 |
| MflI | RGATCY | 3 cut(s) | 26, 295, 1243 |
| MhlI | GDGCHC | 1 cut(s) | 634 |
| MlsI | TGGCCA | 1 cut(s) | 1199 |
| MluNI | TGGCCA | 1 cut(s) | 1199 |
| MlyI | GAGTC | 3 cut(s) | 51, 1406, 1407 |
| Mox20I | TGGCCA | 1 cut(s) | 1199 |
| MroXI | GAANNNNTTC | 1 cut(s) | 609 |
| MscI | TGGCCA | 1 cut(s) | 1199 |
| MseI | TTAA | 9 cut(s) | 210, 596, 750, 798, 1104, 1122, 1152, 1221, 1430 |
| Msp20I | TGGCCA | 1 cut(s) | 1199 |
| MspI | CCGG | 1 cut(s) | 524 |
| MspR9I | CCNGG | 2 cut(s) | 525, 615 |
| Mva1269I | GAATGC | 1 cut(s) | 720 |
| MvaI | CCWGG | 1 cut(s) | 615 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 147, 344, 510, 909, 918 |
| NciI | CCSGG | 1 cut(s) | 525 |
| NdeII | GATC | 9 cut(s) | 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339 |
| NlaIII | CATG | 6 cut(s) | 135, 345, 652, 700, 932, 1316 |
| NlaIV | GGNNCC | 4 cut(s) | 187, 297, 360, 1015 |
| NmeAIII | GCCGAG | 1 cut(s) | 39 |
| NmuCI | GTSAC | 1 cut(s) | 706 |
| NspI | RCATGY | 1 cut(s) | 700 |
| NspV | TTCGAA | 1 cut(s) | 493 |
| PaeR7I | CTCGAG | 1 cut(s) | 887 |
| PceI | AGGCCT | 2 cut(s) | 921, 1404 |
| PciI | ACATGT | 1 cut(s) | 696 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 107, 116 |
| PctI | GAATGC | 1 cut(s) | 720 |
| PdmI | GAANNNNTTC | 1 cut(s) | 609 |
| PfeI | GAWTC | 5 cut(s) | 217, 323, 569, 728, 1177 |
| PfoI | TCCNGGA | 1 cut(s) | 613 |
| PkrI | GCNGC | 3 cut(s) | 340, 1258, 1451 |
| PleI | GAGTC | 3 cut(s) | 51, 1405, 1407 |
| PpsI | GAGTC | 3 cut(s) | 51, 1405, 1407 |
| Ppu21I | YACGTR | 1 cut(s) | 429 |
| PpuMI | RGGWCCY | 1 cut(s) | 358 |
| PscI | ACATGT | 1 cut(s) | 696 |
| Psp5II | RGGWCCY | 1 cut(s) | 358 |
| Psp6I | CCWGG | 1 cut(s) | 613 |
| PspGI | CCWGG | 1 cut(s) | 613 |
| PspN4I | GGNNCC | 4 cut(s) | 187, 297, 360, 1015 |
| PspPI | GGNCC | 1 cut(s) | 358 |
| PspPPI | RGGWCCY | 1 cut(s) | 358 |
| PspXI | VCTCGAGB | 1 cut(s) | 887 |
| PsuI | RGATCY | 3 cut(s) | 26, 295, 1243 |
| RsaI | GTAC | 5 cut(s) | 164, 205, 457, 695, 893 |
| RsaNI | GTAC | 5 cut(s) | 163, 204, 456, 694, 892 |
| SaqAI | TTAA | 9 cut(s) | 210, 596, 750, 798, 1104, 1122, 1152, 1221, 1430 |
| SatI | GCNGC | 3 cut(s) | 339, 1257, 1450 |
| Sau3AI | GATC | 9 cut(s) | 26, 120, 179, 295, 760, 1060, 1087, 1243, 1339 |
| Sau96I | GGNCC | 1 cut(s) | 358 |
| ScaI | AGTACT | 1 cut(s) | 893 |
| SchI | GAGTC | 3 cut(s) | 51, 1406, 1407 |
| ScrFI | CCNGG | 2 cut(s) | 525, 615 |
| SduI | GDGCHC | 1 cut(s) | 634 |
| SfaNI | GCATC | 7 cut(s) | 23, 494, 525, 807, 1061, 1284, 1312 |
| Sfr274I | CTCGAG | 1 cut(s) | 887 |
| SfuI | TTCGAA | 1 cut(s) | 493 |
| SinI | GGWCC | 1 cut(s) | 358 |
| SlaI | CTCGAG | 1 cut(s) | 887 |
| SmlI | CTYRAG | 2 cut(s) | 887, 923 |
| SmoI | CTYRAG | 2 cut(s) | 887, 923 |
| SnaBI | TACGTA | 1 cut(s) | 429 |
| SseBI | AGGCCT | 2 cut(s) | 921, 1404 |
| SsiI | CCGC | 2 cut(s) | 504, 1183 |
| SspMI | CTAG | 2 cut(s) | 501, 1418 |
| StuI | AGGCCT | 2 cut(s) | 921, 1404 |
| StyD4I | CCNGG | 2 cut(s) | 523, 613 |
| StyI | CCWWGG | 2 cut(s) | 291, 1044 |
| TaaI | ACNGT | 5 cut(s) | 742, 773, 1331, 1379, 1436 |
| TaiI | ACGT | 2 cut(s) | 431, 1120 |
| TaqI | TCGA | 8 cut(s) | 119, 351, 493, 583, 657, 731, 759, 888 |
| TatI | WGTACW | 4 cut(s) | 162, 203, 693, 891 |
| TfiI | GAWTC | 5 cut(s) | 217, 323, 569, 728, 1177 |
| Tru1I | TTAA | 9 cut(s) | 210, 596, 750, 798, 1104, 1122, 1152, 1221, 1430 |
| Tru9I | TTAA | 9 cut(s) | 210, 596, 750, 798, 1104, 1122, 1152, 1221, 1430 |
| TscAI | CASTG | 3 cut(s) | 778, 1072, 1414 |
| TseFI | GTSAC | 1 cut(s) | 706 |
| TseI | GCWGC | 3 cut(s) | 338, 1256, 1449 |
| Tsp45I | GTSAC | 1 cut(s) | 706 |
| TspDTI | ATGAA | 4 cut(s) | 447, 637, 672, 945 |
| TspRI | CASTG | 3 cut(s) | 778, 1072, 1414 |
| VpaK11BI | GGWCC | 1 cut(s) | 358 |
| XapI | RAATTY | 3 cut(s) | 641, 983, 1148 |
| XceI | RCATGY | 1 cut(s) | 700 |
| XhoI | CTCGAG | 1 cut(s) | 887 |
| XmnI | GAANNNNTTC | 1 cut(s) | 609 |
| XspI | CTAG | 2 cut(s) | 501, 1418 |
| ZrmI | AGTACT | 1 cut(s) | 893 |