Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005926

Physical Location & Seq

Genomic Coordinates Forward (+)

9961356 .. 9963289

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14560.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGTTGGCATATATATTTGCCTATGGTGGCAGTCATAAAGGTAGATCGATCCGATAAAACTTTTGATTTGTTGCTGAGATCCATTTGTTCGGGGGTTCTGATTCTCGGGACCAGCCTAAGGTTTTCGTATTCGTCTTCTTCTCTGGATCCGAATTCCTACGTGTATTACGCTGATAATTATCCAAAAGAAGCGGCAGCATGGGCAATCGGCGAAGATCCTAAAGAAACTCAGAGAAGGAAATTCTTCACGTATGAAAGGCGGCTCCGAGATCAAAGTCCTTCGGAGAAGTTATTCGAGTACTTTGCACCGGTTAAAAACCCCAACGGAGAGGCGCTTATGACGCCAACAGACTTGATGAGAGCGGTGGTTCCTGTATTTCCTCCCTCAGAATCAACCCGCGTTAAGAGAGGGGTCTCTGAGAGGGGAGAAGGTTCCCGGCGAGCTGCAGTGTTCATCTTTTTCGTCACACTTCTCGGCATCCCTGAACCGAGTTTTACAATTGCATTTAAAATGTTTGATCTCGACAACAGTGGAGACATTGATAGGCAGGAGTTTAATAAAGTCATGGCCTTGATGCGATCTCAAAGTAAACCGAACATGGAAGGCCACAGGCTCAAGGTTTCTGTCGAAGACAGAGGACTACTTGAGTACTTCTTTGGCAACGACGGCAAAAGAAGTCTGACACTTGAAAGATTCGTTCAGTTTTTCCGTGATTTACACGAAGAAGTATGCGATCTTTTTTCAGGGTTTGTGATTTTATCATACTATTTTTTCAGTCAGCTGATCATTTTCCTGTTTCTTTTTCTTCCTCTGTTTTCGAATTTGAAAGATTATGCGATTGGAGTTTGTTCACTAGACTACAAAGCACAAGGAAACATGTTGGCCAAAGATTTCGCGGTGTCCTTGGTTGCATCTGCTGACAGCAGTGACATAAACAAGTTGCTTGATTGGGTGGACAAAATTGAGAACATCACACGTCTTAAGGACGTAAGAATCCCATACAAGGAATTCAAAGACTTCGCAGAGCTGCGTAAGAACTTGCAGTCCTTCTCTCTGGCTCTTTTCAGTTATGGAGAAGTTAACAGGGTACGTGGCATCTCTGTTTCTACTAATGTGCTTGACATAATATTCCATGTATTCGAAGCAAATGGCGACCGGGATTTAAGCGCAAATGAGTATGTACGAGTTTTACAAAGACGGGGAGGCGAAATCCAAGAGACAGGCTTACGGGGACTCCTATCTTGCTGGTTAAACTGTTCCTGTAAAGCTTTTGCTCAGAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

430

Amino Acids

49.11

Weight (kDa)

6.92

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005926)

Species	Orthologous Gene IDs
malus_domestica	MD02G1018100.v1.1 MD15G1162000.v1.1
prunus_persica	Prupe.7G257300_v2.0.a1
pyrus_communis	pycom15g14560
rosa_chinensis	RchiOBHm_Chr2g0087011 RchiOBHm_Chr7g0219711
rosa_laevigata	RLG00000002277 RLG00000015822
rosa_multiflora	Rmu_sc0000902.1_g000013 Rmu_sc0000902.1_g000014 Rmu_sc0010698.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153960 Rroxscaffold_3G00239910 Rroxscaffold_3G00239920 Rroxscaffold_3G00239930
rosa_rugosa	Rorug01G0471500 Rorug07G0186800
rosa_samantha	Rh2AG024300 Rh2BG024800 Rh2CG024900 Rh2DG024800 Rh7AG330900 Rh7BG320600 Rh7CG348200 Rh7DG326300
rosa_wichuraiana	Rw2G001910 Rw2G001960 Rw7G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	365
AccII	CGCG	2 cut(s)	402, 899
AciI	CCGC	5 cut(s)	194, 262, 365, 400, 899
AclWI	GGATC	5 cut(s)	45, 75, 143, 156, 212
AcoI	YGGCCR	1 cut(s)	885
AcsI	RAATTY	4 cut(s)	154, 242, 823, 1010
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	4 cut(s)	302, 653, 1092, 1185
AfiI	CCNNNNNNNGG	2 cut(s)	120, 1006
AflII	CTTAAG	1 cut(s)	983
AflIII	ACRYGT	3 cut(s)	162, 879, 977
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	692, 829, 1015
AjiI	CACGTC	1 cut(s)	980
AloI	GAACNNNNNNTCC	2 cut(s)	1031, 1063
AluBI	AGCT	4 cut(s)	446, 784, 1030, 1271
AluI	AGCT	4 cut(s)	446, 784, 1030, 1271
Alw26I	GTCTC	3 cut(s)	421, 531, 1214
AlwI	GGATC	5 cut(s)	45, 75, 143, 156, 212
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	3 cut(s)	570, 607, 885
ApeKI	GCWGC	3 cut(s)	197, 446, 1030
ApoI	RAATTY	4 cut(s)	154, 242, 823, 1010
AsiGI	ACCGGT	1 cut(s)	310
Asp700I	GAANNNNTTC	2 cut(s)	245, 293
AspLEI	GCGC	2 cut(s)	337, 1172
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	2 cut(s)	439, 1160
AsuII	TTCGAA	2 cut(s)	821, 1143
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	111
AxyI	CCTNAGG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	887
BamHI	GGATCC	1 cut(s)	148
BbsI	GAAGAC	2 cut(s)	129, 639
BbvI	GCAGC	3 cut(s)	209, 433, 1017
BceAI	ACGGC	1 cut(s)	685
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BclI	TGATCA	1 cut(s)	786
BcnI	CCSGG	2 cut(s)	439, 1160
BcoDI	GTCTC	3 cut(s)	421, 531, 1214
BfaI	CTAG	1 cut(s)	857
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	338
BfrI	CTTAAG	1 cut(s)	983
BisI	GCNGC	5 cut(s)	195, 198, 263, 447, 1031
BlsI	GCNGC	5 cut(s)	196, 199, 264, 448, 1032
BmcAI	AGTACT	2 cut(s)	302, 653
Bme1390I	CCNGG	2 cut(s)	439, 1160
Bme18I	GGWCC	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	5 cut(s)	112, 150, 266, 372, 436
BmrFI	CCNGG	2 cut(s)	439, 1160
BmsI	GCATC	4 cut(s)	489, 567, 923, 1107
BpiI	GAAGAC	2 cut(s)	129, 639
Bpu14I	TTCGAA	2 cut(s)	821, 1143
BpuEI	CTTGAG	2 cut(s)	602, 668
BpuMI	CCSGG	2 cut(s)	439, 1160
Bsa29I	ATCGAT	1 cut(s)	49
BsaAI	YACGTR	3 cut(s)	163, 252, 1094
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	906
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	1221, 1251
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 1006
Bse118I	RCCGGY	1 cut(s)	310
Bse21I	CCTNAGG	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	906
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	120, 1006
BseMII	CTCAG	4 cut(s)	68, 245, 402, 411
BseXI	GCAGC	3 cut(s)	209, 433, 1017
Bsh1236I	CGCG	2 cut(s)	402, 899
Bsh1285I	CGRYCG	1 cut(s)	1159
BshFI	GGCC	3 cut(s)	572, 609, 887
BshTI	ACCGGT	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	1159
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	311, 439, 1159
BslFI	GGGAC	2 cut(s)	124, 1248
BslI	CCNNNNNNNGG	2 cut(s)	120, 1006
BsmAI	GTCTC	3 cut(s)	421, 531, 1214
BsmFI	GGGAC	2 cut(s)	124, 1248
BsnI	GGCC	3 cut(s)	572, 609, 887
Bso31I	GGTCTC	1 cut(s)	421
BsoBI	CYCGRG	1 cut(s)	107
Bsp119I	TTCGAA	2 cut(s)	821, 1143
BspACI	CCGC	5 cut(s)	194, 262, 365, 400, 899
BspANI	GGCC	3 cut(s)	572, 609, 887
BspCNI	CTCAG	4 cut(s)	69, 244, 401, 412
BspDI	ATCGAT	1 cut(s)	49
BspFNI	CGCG	2 cut(s)	402, 899
BspLI	GGNNCC	5 cut(s)	112, 150, 266, 372, 436
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	5 cut(s)	45, 75, 143, 156, 212
BspT104I	TTCGAA	2 cut(s)	821, 1143
BspTI	CTTAAG	1 cut(s)	983
BspTNI	GGTCTC	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	906
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	906
Bst4CI	ACNGT	2 cut(s)	533, 1259
BstACI	GRCGYC	1 cut(s)	344
BstAFI	CTTAAG	1 cut(s)	983
BstBAI	YACGTR	3 cut(s)	163, 252, 1094
BstBI	TTCGAA	2 cut(s)	821, 1143
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	6 cut(s)	77, 119, 231, 388, 420, 1278
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	2 cut(s)	402, 899
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	2 cut(s)	337, 1172
BstMAI	GTCTC	3 cut(s)	421, 531, 1214
BstMCI	CGRYCG	1 cut(s)	1159
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 343, 669
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	2 cut(s)	437, 1158
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	2 cut(s)	402, 899
BstV1I	GCAGC	3 cut(s)	209, 433, 1017
BstV2I	GAAGAC	2 cut(s)	129, 639
BstX2I	RGATCY	3 cut(s)	80, 148, 217
BstYI	RGATCY	3 cut(s)	80, 148, 217
Bsu15I	ATCGAT	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	572, 609, 887
BsuTUI	ATCGAT	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	980
BtsCI	GGATG	1 cut(s)	480
BtsI	GCAGTG	2 cut(s)	456, 934
BtsIMutI	CAGTG	3 cut(s)	456, 538, 934
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	2 cut(s)	337, 1172
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	49
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	4 cut(s)	301, 652, 1091, 1184
CspAI	ACCGGT	1 cut(s)	310
CviAII	CATG	5 cut(s)	201, 568, 601, 880, 1136
CviQI	GTAC	4 cut(s)	301, 652, 1091, 1184
DdeI	CTNAG	6 cut(s)	77, 119, 231, 388, 420, 1278
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	885
Eco130I	CCWWGG	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	107
EcoRI	GAATTC	2 cut(s)	154, 1010
EcoT14I	CCWWGG	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	906
FaeI	CATG	5 cut(s)	204, 571, 604, 883, 1139
FaqI	GGGAC	2 cut(s)	124, 1248
FatI	CATG	5 cut(s)	200, 567, 600, 879, 1135
FauI	CCCGC	1 cut(s)	407
FbaI	TGATCA	1 cut(s)	786
Fnu4HI	GCNGC	5 cut(s)	195, 198, 263, 447, 1031
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	5 cut(s)	195, 198, 263, 447, 1031
FspBI	CTAG	1 cut(s)	857
GlaI	GCGC	2 cut(s)	336, 1171
GluI	GCNGC	5 cut(s)	195, 198, 263, 447, 1031
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	572, 609, 887
HapII	CCGG	3 cut(s)	311, 439, 1159
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	2 cut(s)	337, 1172
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	5 cut(s)	204, 571, 604, 883, 1139
Hin6I	GCGC	2 cut(s)	335, 1170
HinP1I	GCGC	2 cut(s)	335, 1170
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HindIII	AAGCTT	1 cut(s)	1269
HinfI	GANTC	5 cut(s)	103, 392, 696, 996, 1236
HpaI	GTTAAC	1 cut(s)	1084
HpaII	CCGG	3 cut(s)	311, 439, 1159
Hpy166II	GTNNAC	4 cut(s)	593, 854, 958, 1084
Hpy188III	TCNNGA	3 cut(s)	109, 146, 524
Hpy8I	GTNNAC	4 cut(s)	593, 854, 958, 1084
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	5 cut(s)	231, 291, 425, 599, 1060
HpyCH4III	ACNGT	2 cut(s)	533, 1259
HpyCH4IV	ACGT	5 cut(s)	162, 251, 979, 990, 1093
HpyCH4V	TGCA	5 cut(s)	308, 449, 506, 914, 1045
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 343, 669
HpyF3I	CTNAG	6 cut(s)	77, 119, 231, 388, 420, 1278
HpySE526I	ACGT	5 cut(s)	162, 251, 979, 990, 1093
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	5 cut(s)	204, 571, 604, 883, 1139
HspAI	GCGC	2 cut(s)	335, 1170
Ksp22I	TGATCA	1 cut(s)	786
KspAI	GTTAAC	1 cut(s)	1084
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	3 cut(s)	209, 433, 1017
LweI	GCATC	4 cut(s)	489, 567, 923, 1107
MaeI	CTAG	1 cut(s)	857
MaeII	ACGT	5 cut(s)	162, 251, 979, 990, 1093
MaeIII	GTNAC	2 cut(s)	466, 929
MbiI	CCGCTC	1 cut(s)	365
MboII	GAAGA	7 cut(s)	129, 132, 227, 238, 644, 737, 800
MfeI	CAATTG	1 cut(s)	501
MflI	RGATCY	3 cut(s)	80, 148, 217
MlsI	TGGCCA	1 cut(s)	887
MluCI	AATT	7 cut(s)	154, 178, 242, 501, 823, 963, 1010
MluNI	TGGCCA	1 cut(s)	887
MlyI	GAGTC	1 cut(s)	1230
MnlI	CCTC	8 cut(s)	325, 393, 397, 404, 417, 632, 822, 1199
Mox20I	TGGCCA	1 cut(s)	887
MroXI	GAANNNNTTC	2 cut(s)	245, 293
MscI	TGGCCA	1 cut(s)	887
MseI	TTAA	8 cut(s)	315, 405, 510, 558, 984, 1083, 1166, 1253
Msp20I	TGGCCA	1 cut(s)	887
MspA1I	CMGCKG	1 cut(s)	784
MspCI	CTTAAG	1 cut(s)	983
MspI	CCGG	3 cut(s)	311, 439, 1159
MspR9I	CCNGG	2 cut(s)	439, 1160
MunI	CAATTG	1 cut(s)	501
MvnI	CGCG	2 cut(s)	402, 899
MwoI	GCNNNNNNNGC	3 cut(s)	203, 343, 669
NciI	CCSGG	2 cut(s)	439, 1160
NlaIII	CATG	5 cut(s)	204, 571, 604, 883, 1139
NlaIV	GGNNCC	5 cut(s)	112, 150, 266, 372, 436
NmeAIII	GCCGAG	1 cut(s)	456
NmuCI	GTSAC	2 cut(s)	466, 929
NspI	RCATGY	1 cut(s)	883
NspV	TTCGAA	2 cut(s)	821, 1143
PciI	ACATGT	1 cut(s)	879
PdmI	GAANNNNTTC	2 cut(s)	245, 293
PfeI	GAWTC	4 cut(s)	103, 392, 696, 996
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	196, 199, 264, 448, 1032
PleI	GAGTC	1 cut(s)	1230
PpsI	GAGTC	1 cut(s)	1230
Ppu21I	YACGTR	3 cut(s)	163, 252, 1094
PscI	ACATGT	1 cut(s)	879
PspN4I	GGNNCC	5 cut(s)	112, 150, 266, 372, 436
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	80, 148, 217
PvuII	CAGCTG	1 cut(s)	784
RsaI	GTAC	4 cut(s)	302, 653, 1092, 1185
RsaNI	GTAC	4 cut(s)	301, 652, 1091, 1184
SaqAI	TTAA	8 cut(s)	315, 405, 510, 558, 984, 1083, 1166, 1253
SatI	GCNGC	5 cut(s)	195, 198, 263, 447, 1031
Sau96I	GGNCC	1 cut(s)	111
ScaI	AGTACT	2 cut(s)	302, 653
SchI	GAGTC	1 cut(s)	1230
ScrFI	CCNGG	2 cut(s)	439, 1160
SfaNI	GCATC	4 cut(s)	489, 567, 923, 1107
SfcI	CTRYAG	1 cut(s)	447
SfuI	TTCGAA	2 cut(s)	821, 1143
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	3 cut(s)	617, 647, 983
SmoI	CTYRAG	3 cut(s)	617, 647, 983
Sse9I	AATT	7 cut(s)	154, 178, 242, 501, 823, 963, 1010
SsiI	CCGC	5 cut(s)	194, 262, 365, 400, 899
SspI	AATATT	1 cut(s)	1131
SspMI	CTAG	1 cut(s)	857
StyD4I	CCNGG	2 cut(s)	437, 1158
StyI	CCWWGG	1 cut(s)	906
TaaI	ACNGT	2 cut(s)	533, 1259
TaiI	ACGT	5 cut(s)	165, 254, 982, 993, 1096
TaqI	TCGA	6 cut(s)	49, 297, 525, 630, 821, 1143
TasI	AATT	7 cut(s)	154, 178, 242, 501, 823, 963, 1010
TatI	WGTACW	2 cut(s)	300, 651
TauI	GCSGC	2 cut(s)	197, 265
TfiI	GAWTC	4 cut(s)	103, 392, 696, 996
Tru1I	TTAA	8 cut(s)	315, 405, 510, 558, 984, 1083, 1166, 1253
Tru9I	TTAA	8 cut(s)	315, 405, 510, 558, 984, 1083, 1166, 1253
TscAI	CASTG	3 cut(s)	456, 538, 934
TseFI	GTSAC	2 cut(s)	466, 929
TseI	GCWGC	3 cut(s)	197, 446, 1030
Tsp45I	GTSAC	2 cut(s)	466, 929
TspDTI	ATGAA	2 cut(s)	270, 445
TspGWI	ACGGA	2 cut(s)	342, 701
TspRI	CASTG	3 cut(s)	456, 538, 934
Vha464I	CTTAAG	1 cut(s)	983
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	4 cut(s)	154, 242, 823, 1010
XceI	RCATGY	1 cut(s)	883
XmnI	GAANNNNTTC	2 cut(s)	245, 293
XspI	CTAG	1 cut(s)	857
ZrmI	AGTACT	2 cut(s)	302, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.