Rw2G001910

Calcium uptake protein 1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
1576252 .. 1578312
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001910.1

Sequence Viewer

Length: 1464 bp
ATGTTTTCTTGGGCATCTTCAAGAAGATCTTCAGGGGTTGTTTTGGGTGTTAATCAACGACTCGGCTCTCTCACATTGTTCAGTAAATCACAACCTTCATCATCGCCATCTTCGTCTTCTTCGATCAGCTCATCATGTGGTGGCAGTTTTGGTTGTAATAATGAGTACAATCACAAGAGTAGATCAGGCTCCTCCAATAAGGGTAGTAAATTTGATTTGATTCAGAGGTCAGTTTCTTCAGGGGTTCTAATTCTCGGGTCAAGCATAGGCTATTCTTATTGGTCTTCTTCTACCTTGGATCCAAACGCCTCTGTTTGTTTTGCTGATTCCAAAGAGGAGGCAGCATGGGCAATCGAGCAGGACCCTGCAGAACAATTCAAGTCCCTCTTTTCAAATACATTTAGGAGAAAAAAGTTCTTTACGTATGAAAAAAAGATAAGAGAGCGAAGTACCCCTGAAAAGATTTTCAATTACTTTGCATCAGTTCGAACCCCTAGCGGAGAGTGCTTTATGACTCCGGGGGACTTGATGCGAGCTGTTGTTCCTGTGTTTCCTCCCTATGATTCAAATCGGGTTCGAGAAGGCTCTTTAAGAGGGGAAAATGTTCCTGGAGAATTGCAATGTGCTCCTTCTAAATTCTTCATGCTTTTCGACACTGATGGTGATGGCCTCATTTCATTTCAAGAGTACATGTTTTTCGTCACTCTCCTCAGCATTCCTGAATCGAGTTTTACTGTGGCATTTAAAATGTTCGATCTTGACAACAGTGGAGACATTGATAAGGAAGAGTTTAACAGAGTTATGGCATTGATGCGAAATCACAACAATAAAATCAAGGACGGCCACAGGGTCAAAGTTGGTGTAGAAGAGGGAGGAATACTCGAGTACTTCTTCGGCAAAGACGGCAAAAAAGGCCTTAAGCATGAAAGATTTGTTCAGTTTTTCAGGGATTTACACGAGGAAATGTTGCGCTTGGAGTTTGCTCATTATGACTACAAATCAAAAGGAACCATAACAGCTAAAGATTTTGCCTTGTCCTTGGTTGCATCTGCTGATCTCAGTGACTTATACAAGTTGCTTGATCGTGTTGACGATATTAACAACGCCCCACGTCTTAACAACATACAAATTACATACAAGGAATTTAAAGATTTTGCAGAGCTACGCAAGAATTTGCAGTCTTTCTCTTTGGCCATTTTCAGCTACGGCGAGGTTAATGGGGTTTTGACAAAATCAGATCTCCAGAGAGCAGCTTCCAAAGTATGTGGCATCAATGTTACAGACAATGTGATGGACATAATCTTCCATGTATTCGATGCAAATGGTGATGGTGACCTAAGTGCGAACGAGTTTGTCAAAGTTTTACAGAACCGTGGAGGTGAACCCGTAGAGTCAGGCCTCAGGGGATTCCTAACTTGCTTCTTAAACTGTGCAACTAAAAGCTGCTCCTACGCTCAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

54.39

Weight (kDa)

6.68

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_5 PF13202 247 - 268 2.6e-06 EF hand
EF-hand_8 PF13833 406 - 457 4.2e-08 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 498
AclWI GGATC 2 cut(s) 293, 306
AcoI YGGCCR 2 cut(s) 841, 1191
AcsI RAATTY 4 cut(s) 209, 635, 1142, 1171
AcuI CTGAAG 2 cut(s) 15, 222
AfaI GTAC 4 cut(s) 167, 451, 689, 887
AflII CTTAAG 1 cut(s) 917
AflIII ACRYGT 1 cut(s) 690
AgsI TTSAA 6 cut(s) 21, 379, 393, 469, 567, 683
AjiI CACGTC 1 cut(s) 1112
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 7 cut(s) 129, 536, 1019, 1162, 1203, 1253, 1443
AluI AGCT 7 cut(s) 129, 536, 1019, 1162, 1203, 1253, 1443
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 1 cut(s) 765
AlwI GGATC 2 cut(s) 293, 306
Ama87I CYCGRG 2 cut(s) 254, 881
AoxI GGCC 5 cut(s) 667, 841, 913, 1191, 1396
ApeKI GCWGC 3 cut(s) 341, 1250, 1443
ApoI RAATTY 4 cut(s) 209, 635, 1142, 1171
Asp700I GAANNNNTTC 2 cut(s) 28, 603
AspLEI GCGC 1 cut(s) 972
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 4 cut(s) 674, 1337, 1343, 1391
AsuII TTCGAA 1 cut(s) 487
AvaI CYCGRG 2 cut(s) 254, 881
AvaII GGWCC 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 1400
BalI TGGCCA 1 cut(s) 1193
BamHI GGATCC 1 cut(s) 298
BauI CACGAG 1 cut(s) 956
BbsI GAAGAC 2 cut(s) 108, 276
Bbv12I GWGCWC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 3 cut(s) 353, 1262, 1430
BccI CCATC 5 cut(s) 115, 653, 659, 1285, 1322
BceAI ACGGC 3 cut(s) 856, 919, 1222
BciT130I CCWGG 1 cut(s) 609
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 366
BfrI CTTAAG 1 cut(s) 917
BglII AGATCT 2 cut(s) 26, 1237
BisI GCNGC 3 cut(s) 342, 1251, 1444
BlsI GCNGC 3 cut(s) 343, 1252, 1445
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 2 cut(s) 519, 609
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 2 cut(s) 254, 881
BmgBI CACGTC 1 cut(s) 1112
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 4 cut(s) 190, 300, 363, 1009
BmrFI CCNGG 2 cut(s) 519, 609
BmsI GCATC 7 cut(s) 23, 488, 519, 801, 1055, 1278, 1306
BpiI GAAGAC 2 cut(s) 108, 276
BplI GAGNNNNNCTC 2 cut(s) 864, 896
BpmI CTGGAG 2 cut(s) 630, 1226
Bpu10I CCTNAGC 1 cut(s) 710
Bpu14I TTCGAA 1 cut(s) 487
BpuMI CCSGG 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 4 cut(s) 294, 518, 1038, 1372
Bse21I CCTNAGG 1 cut(s) 1400
Bse3DI GCAATG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 4 cut(s) 294, 518, 1038, 1372
BseJI GATNNNNATC 1 cut(s) 567
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 3 cut(s) 724, 1072, 1414
BseRI GAGGAG 3 cut(s) 181, 350, 698
BseXI GCAGC 3 cut(s) 353, 1262, 1430
BshFI GGCC 5 cut(s) 669, 843, 915, 1193, 1398
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 2 cut(s) 254, 881
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 2 cut(s) 367, 536
BsmAI GTCTC 1 cut(s) 765
BsmFI GGGAC 2 cut(s) 367, 536
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 5 cut(s) 669, 843, 915, 1193, 1398
BsoBI CYCGRG 2 cut(s) 254, 881
Bsp119I TTCGAA 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 8 cut(s) 26, 123, 182, 298, 754, 1054, 1081, 1237
BspACI CCGC 1 cut(s) 498
BspANI GGCC 5 cut(s) 669, 843, 915, 1193, 1398
BspCNI CTCAG 3 cut(s) 723, 1071, 1413
BspLI GGNNCC 4 cut(s) 190, 300, 363, 1009
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 2 cut(s) 293, 306
BspT104I TTCGAA 1 cut(s) 487
BspTI CTTAAG 1 cut(s) 917
BsrDI GCAATG 1 cut(s) 626
BssECI CCNNGG 4 cut(s) 294, 518, 1038, 1372
BssMI GATC 8 cut(s) 26, 123, 182, 298, 754, 1054, 1081, 1237
BssSI CACGAG 1 cut(s) 956
BssT1I CCWWGG 2 cut(s) 294, 1038
Bst2BI CACGAG 1 cut(s) 956
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 4 cut(s) 736, 767, 1373, 1430
Bst6I CTCTTC 2 cut(s) 780, 861
BstAFI CTTAAG 1 cut(s) 917
BstBAI YACGTR 1 cut(s) 423
BstBI TTCGAA 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 5 cut(s) 710, 1058, 1337, 1400, 1455
BstDSI CCRYGG 1 cut(s) 1372
BstEII GGTNACC 1 cut(s) 1331
BstHHI GCGC 1 cut(s) 972
BstKTI GATC 8 cut(s) 29, 126, 185, 301, 757, 1057, 1084, 1240
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 8 cut(s) 26, 123, 182, 298, 754, 1054, 1081, 1237
BstMWI GCNNNNNNNGC 4 cut(s) 347, 504, 903, 912
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 694
BstPI GGTNACC 1 cut(s) 1331
BstSCI CCNGG 2 cut(s) 517, 607
BstSFI CTRYAG 1 cut(s) 366
BstSNI TACGTA 1 cut(s) 423
BstV1I GCAGC 3 cut(s) 353, 1262, 1430
BstV2I GAAGAC 2 cut(s) 108, 276
BstX2I RGATCY 3 cut(s) 26, 298, 1237
BstYI RGATCY 3 cut(s) 26, 298, 1237
Bsu36I CCTNAGG 1 cut(s) 1400
BsuRI GGCC 5 cut(s) 669, 843, 915, 1193, 1398
BtgI CCRYGG 1 cut(s) 1372
BtgZI GCGATG 1 cut(s) 87
BtrI CACGTC 1 cut(s) 1112
BtsIMutI CAGTG 3 cut(s) 654, 772, 1066
Cac8I GCNNGC 1 cut(s) 534
CfoI GCGC 1 cut(s) 972
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 4 cut(s) 166, 450, 688, 886
CspCI CAANNNNNGTGG 2 cut(s) 1246, 1281
CviAII CATG 6 cut(s) 135, 345, 643, 691, 923, 1307
CviQI GTAC 4 cut(s) 166, 450, 688, 886
DdeI CTNAG 5 cut(s) 710, 1058, 1337, 1400, 1455
DpnI GATC 8 cut(s) 28, 125, 184, 300, 756, 1056, 1083, 1239
DpnII GATC 8 cut(s) 26, 123, 182, 298, 754, 1054, 1081, 1237
DraI TTTAAA 2 cut(s) 745, 1147
EaeI YGGCCR 2 cut(s) 841, 1191
Eam1104I CTCTTC 2 cut(s) 780, 861
EarI CTCTTC 2 cut(s) 780, 861
Eco105I TACGTA 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 294, 1038
Eco147I AGGCCT 2 cut(s) 915, 1398
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 15, 222
Eco81I CCTNAGG 1 cut(s) 1400
Eco88I CYCGRG 2 cut(s) 254, 881
Eco91I GGTNACC 1 cut(s) 1331
EcoO109I RGGNCCY 1 cut(s) 361
EcoO65I GGTNACC 1 cut(s) 1331
EcoRII CCWGG 1 cut(s) 607
EcoT14I CCWWGG 2 cut(s) 294, 1038
ErhI CCWWGG 2 cut(s) 294, 1038
FaeI CATG 6 cut(s) 138, 348, 646, 694, 926, 1310
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 371, 403
FaqI GGGAC 2 cut(s) 367, 536
FatI CATG 6 cut(s) 134, 344, 642, 690, 922, 1306
Fnu4HI GCNGC 3 cut(s) 342, 1251, 1444
Fsp4HI GCNGC 3 cut(s) 342, 1251, 1444
FspBI CTAG 1 cut(s) 495
GlaI GCGC 1 cut(s) 971
GluI GCNGC 3 cut(s) 342, 1251, 1444
GsuI CTGGAG 2 cut(s) 630, 1226
HaeIII GGCC 5 cut(s) 669, 843, 915, 1193, 1398
HapII CCGG 1 cut(s) 518
HhaI GCGC 1 cut(s) 972
Hin1II CATG 6 cut(s) 138, 348, 646, 694, 926, 1310
Hin6I GCGC 1 cut(s) 970
HinP1I GCGC 1 cut(s) 970
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HinfI GANTC 8 cut(s) 60, 220, 326, 514, 563, 722, 1391, 1407
HpaII CCGG 1 cut(s) 518
HphI GGTGA 4 cut(s) 674, 1337, 1343, 1391
Hpy166II GTNNAC 2 cut(s) 1090, 1382
Hpy188I TCNGA 3 cut(s) 225, 1237, 1458
Hpy188III TCNNGA 6 cut(s) 21, 578, 683, 719, 758, 1243
Hpy8I GTNNAC 2 cut(s) 1090, 1382
HpyAV CCTTC 3 cut(s) 105, 575, 639
HpyCH4III ACNGT 4 cut(s) 736, 767, 1373, 1430
HpyCH4IV ACGT 2 cut(s) 422, 1111
HpyCH4V TGCA 8 cut(s) 368, 479, 619, 1046, 1157, 1177, 1319, 1433
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 504, 903, 912
HpyF3I CTNAG 5 cut(s) 710, 1058, 1337, 1400, 1455
HpySE526I ACGT 2 cut(s) 422, 1111
Hsp92II CATG 6 cut(s) 138, 348, 646, 694, 926, 1310
HspAI GCGC 1 cut(s) 970
Kzo9I GATC 8 cut(s) 26, 123, 182, 298, 754, 1054, 1081, 1237
LmnI GCTCC 3 cut(s) 194, 631, 1451
Lsp1109I GCAGC 3 cut(s) 353, 1262, 1430
LweI GCATC 7 cut(s) 23, 488, 519, 801, 1055, 1278, 1306
MaeI CTAG 1 cut(s) 495
MaeII ACGT 2 cut(s) 422, 1111
MaeIII GTNAC 4 cut(s) 700, 1061, 1276, 1331
MalI GATC 8 cut(s) 28, 125, 184, 300, 756, 1056, 1083, 1239
MboI GATC 8 cut(s) 26, 123, 182, 298, 754, 1054, 1081, 1237
MflI RGATCY 3 cut(s) 26, 298, 1237
MhlI GDGCHC 1 cut(s) 628
MlsI TGGCCA 1 cut(s) 1193
MluCI AATT 9 cut(s) 209, 249, 374, 469, 614, 635, 1128, 1142, 1171
MluNI TGGCCA 1 cut(s) 1193
MlyI GAGTC 3 cut(s) 54, 508, 1400
Mox20I TGGCCA 1 cut(s) 1193
MroXI GAANNNNTTC 2 cut(s) 28, 603
MscI TGGCCA 1 cut(s) 1193
Msp20I TGGCCA 1 cut(s) 1193
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 519, 609
Mva1269I GAATGC 1 cut(s) 714
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 4 cut(s) 347, 504, 903, 912
NciI CCSGG 1 cut(s) 519
NdeII GATC 8 cut(s) 26, 123, 182, 298, 754, 1054, 1081, 1237
NlaIII CATG 6 cut(s) 138, 348, 646, 694, 926, 1310
NlaIV GGNNCC 4 cut(s) 190, 300, 363, 1009
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 3 cut(s) 700, 1061, 1331
NspI RCATGY 1 cut(s) 694
NspV TTCGAA 1 cut(s) 487
PaeR7I CTCGAG 1 cut(s) 881
PceI AGGCCT 2 cut(s) 915, 1398
PciI ACATGT 1 cut(s) 690
PcsI WCGNNNNNNNCGW 2 cut(s) 110, 119
PctI GAATGC 1 cut(s) 714
PdmI GAANNNNTTC 2 cut(s) 28, 603
PfeI GAWTC 5 cut(s) 220, 326, 563, 722, 1407
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 3 cut(s) 343, 1252, 1445
PleI GAGTC 3 cut(s) 54, 508, 1399
PpsI GAGTC 3 cut(s) 54, 508, 1399
Ppu21I YACGTR 1 cut(s) 423
PpuMI RGGWCCY 1 cut(s) 361
PscI ACATGT 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 607
PspEI GGTNACC 1 cut(s) 1331
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 4 cut(s) 190, 300, 363, 1009
PspPI GGNCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 361
PspXI VCTCGAGB 1 cut(s) 881
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 3 cut(s) 26, 298, 1237
RsaI GTAC 4 cut(s) 167, 451, 689, 887
RsaNI GTAC 4 cut(s) 166, 450, 688, 886
SatI GCNGC 3 cut(s) 342, 1251, 1444
Sau3AI GATC 8 cut(s) 26, 123, 182, 298, 754, 1054, 1081, 1237
Sau96I GGNCC 1 cut(s) 361
ScaI AGTACT 1 cut(s) 887
SchI GAGTC 3 cut(s) 54, 508, 1400
ScrFI CCNGG 2 cut(s) 519, 609
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 7 cut(s) 23, 488, 519, 801, 1055, 1278, 1306
SfcI CTRYAG 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 881
SfuI TTCGAA 1 cut(s) 487
SinI GGWCC 1 cut(s) 361
SlaI CTCGAG 1 cut(s) 881
SmlI CTYRAG 2 cut(s) 881, 917
SmoI CTYRAG 2 cut(s) 881, 917
SnaBI TACGTA 1 cut(s) 423
Sse9I AATT 9 cut(s) 209, 249, 374, 469, 614, 635, 1128, 1142, 1171
SseBI AGGCCT 2 cut(s) 915, 1398
SsiI CCGC 1 cut(s) 498
SspMI CTAG 1 cut(s) 495
StuI AGGCCT 2 cut(s) 915, 1398
StyD4I CCNGG 2 cut(s) 517, 607
StyI CCWWGG 2 cut(s) 294, 1038
TaaI ACNGT 4 cut(s) 736, 767, 1373, 1430
TaiI ACGT 2 cut(s) 425, 1114
TaqI TCGA 9 cut(s) 122, 354, 487, 577, 651, 725, 753, 882, 1314
TasI AATT 9 cut(s) 209, 249, 374, 469, 614, 635, 1128, 1142, 1171
TatI WGTACW 3 cut(s) 165, 687, 885
TfiI GAWTC 5 cut(s) 220, 326, 563, 722, 1407
TscAI CASTG 3 cut(s) 661, 772, 1066
TseFI GTSAC 3 cut(s) 700, 1061, 1331
TseI GCWGC 3 cut(s) 341, 1250, 1443
Tsp45I GTSAC 3 cut(s) 700, 1061, 1331
TspDTI ATGAA 5 cut(s) 87, 441, 631, 666, 939
TspRI CASTG 3 cut(s) 661, 772, 1066
Vha464I CTTAAG 1 cut(s) 917
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 4 cut(s) 209, 635, 1142, 1171
XceI RCATGY 1 cut(s) 694
XhoI CTCGAG 1 cut(s) 881
XmnI GAANNNNTTC 2 cut(s) 28, 603
XspI CTAG 1 cut(s) 495
ZrmI AGTACT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.