Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005926

Physical Location & Seq

Genomic Coordinates Forward (+)

31294526 .. 31297026

Gene Structure 2501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG320600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGTTTTCTTGGGCATCTTCAAGAAGATCCTCAGGGGTTGTTTTGGGTGTTCAACGACTCGGCTCTCGCACATTGTTCAGTAAATCACAACCCTCATCATCGCCATCTTCGTCTTCTTCTATCAGCTCATCATGTGGTGGCACTTTTGGCTGTAACAATGAGTACAATTACAAGAGTAGATCAGGCTCCTCTAATAAGCGTAGTACATTTAATTTGATTCAGAGGTCAGTTTCTTCAGGGGTTCTAATTCTCGGGTCAAGCATAGGCTATTCTTATTGGTCTTCTGCTTCCTTGGATCCAAATGCCTCTGTTTGTTTTGCTGATTCCAAAGAGGAGGCAGCATGGGCAATCGAGCAGGACCCAGAACAGTTCAAGTCCCTCTTTTCAAATACATTTAGGAGAAAGAAGTTCTTTACGTATGAAAAAAAGATAAGAGAGCGAAGTACCCCGGAAAAGATTTTCAATTACTTTGCATCAGTTCGAACCCCTAGCGGAGAGTGCTTTATGACGCCGGGGGACTTGATGCGAGCTGTTGTTCCTGTGTTTCCTCCCTATGATTCAAATCGGGTTCGAGAAGGCTCTTTAAGAGGGGAAAATGTTCCTGGAGAATTGCAATGTGCTCCTTCTAAATTCTTCATGCTTTTCGACACTGATGGTGATGGCCTCATTTCATTTCAAGAGTACATGTTTTTCGTCACTCTCCTCAGCATTCCTGAATCGAGTTTTACTGTGGCTTTTAAAATGTTCGATCTTGACAACAGTGGAGACATTGATAGGGAAGAGTTTAACAGAGTTATGGCATTGATGCGAAATCACAACAATAAAAACAAGGACGGCCACAGGGTCAAAGTTGGTGTAGAAGAGGGAGGCATACTCGAGTACTTCTTCGGCAAAGACGGCAAAAAAGGCCTCAAGCATGAAAGATTTGTTCAGTTTTTCAGGGATTTACACGAGGAAATGTTGCGCTTGGAATTTGCTCATTATGACTACAAATCAAAAGGAACCATAACAGCTAAAGATTTTGCCTTGTCCTTGGTTGCATCTGCTGATCTCAGTGTCTTATACAAGTTGCTTGATCGTGTTGACGATATTAACAACGCCCCACGTCTTAACAACATACAAATTACATACAAGGAATTTAAAGATTTTGCAGAGCTACGCAAGAATTTGCGGTCTTTCTCTTTGGCCATTTTCAGCTACGGCGAGGTTAATGGGGTTTTGACAAAATCAGATCTCCAGAGAGCAGCTTCCAAAGTACATTCTCACATACCAATCTATCTGTTACTTCTGATTAGCTTCTTTCATGTGGATACTAACGATCAACTAATCTACACAGGTATGTGGCATCAATGTTTCAGACAATGTGATGGACATAATCTTCCATGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

463

Amino Acids

52.51

Weight (kDa)

8.61

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	211 - 266	6.3e-06	EF-hand domain pair
EF-hand_5	PF13202	245 - 266	5.3e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005926)

Species	Orthologous Gene IDs
malus_domestica	MD02G1018100.v1.1 MD15G1162000.v1.1
prunus_persica	Prupe.7G257300_v2.0.a1
pyrus_communis	pycom15g14560
rosa_chinensis	RchiOBHm_Chr2g0087011 RchiOBHm_Chr7g0219711
rosa_laevigata	RLG00000002277 RLG00000015822
rosa_multiflora	Rmu_sc0000902.1_g000013 Rmu_sc0000902.1_g000014 Rmu_sc0010698.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153960 Rroxscaffold_3G00239910 Rroxscaffold_3G00239920 Rroxscaffold_3G00239930
rosa_rugosa	Rorug01G0471500 Rorug07G0186800
rosa_samantha	Rh2AG024300 Rh2BG024800 Rh2CG024900 Rh2DG024800 Rh7AG330900 Rh7BG320600 Rh7CG348200 Rh7DG326300
rosa_wichuraiana	Rw2G001910 Rw2G001960 Rw7G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	492, 1171
AclWI	GGATC	3 cut(s)	21, 290, 303
AcoI	YGGCCR	2 cut(s)	835, 1185
AcsI	RAATTY	4 cut(s)	629, 971, 1136, 1165
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	6 cut(s)	164, 205, 445, 683, 881, 1257
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	7 cut(s)	21, 53, 373, 387, 463, 561, 677
AjiI	CACGTC	1 cut(s)	1106
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	7 cut(s)	126, 530, 1013, 1156, 1197, 1247, 1296
AluI	AGCT	7 cut(s)	126, 530, 1013, 1156, 1197, 1247, 1296
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	3 cut(s)	21, 290, 303
Ama87I	CYCGRG	2 cut(s)	251, 875
AoxI	GGCC	4 cut(s)	661, 835, 907, 1185
ApeKI	GCWGC	2 cut(s)	338, 1244
ApoI	RAATTY	4 cut(s)	629, 971, 1136, 1165
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	966
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	2 cut(s)	449, 513
AsuHPI	GGTGA	1 cut(s)	668
AsuII	TTCGAA	1 cut(s)	481
AvaI	CYCGRG	2 cut(s)	251, 875
AvaII	GGWCC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	1187
BamHI	GGATCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	950
BbsI	GAAGAC	2 cut(s)	105, 273
Bbv12I	GWGCWC	1 cut(s)	622
BbvCI	CCTCAGC	1 cut(s)	704
BbvI	GCAGC	2 cut(s)	350, 1256
BccI	CCATC	4 cut(s)	112, 647, 653, 1361
BceAI	ACGGC	3 cut(s)	850, 913, 1216
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	1303
BcnI	CCSGG	2 cut(s)	449, 513
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	1303
BglII	AGATCT	1 cut(s)	1231
BisI	GCNGC	2 cut(s)	339, 1245
BlsI	GCNGC	2 cut(s)	340, 1246
BmcAI	AGTACT	1 cut(s)	881
Bme1390I	CCNGG	3 cut(s)	449, 513, 603
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	2 cut(s)	251, 875
BmgBI	CACGTC	1 cut(s)	1106
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	4 cut(s)	187, 297, 360, 1003
BmrFI	CCNGG	3 cut(s)	449, 513, 603
BmsI	GCATC	6 cut(s)	23, 482, 513, 795, 1049, 1354
BpiI	GAAGAC	2 cut(s)	105, 273
BplI	GAGNNNNNCTC	2 cut(s)	858, 890
BpmI	CTGGAG	2 cut(s)	624, 1220
Bpu10I	CCTNAGC	1 cut(s)	704
Bpu14I	TTCGAA	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	2 cut(s)	449, 513
BsaAI	YACGTR	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	4 cut(s)	291, 447, 512, 1032
Bse21I	CCTNAGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	620
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	4 cut(s)	291, 447, 512, 1032
BseJI	GATNNNNATC	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	3 cut(s)	45, 718, 1066
BseRI	GAGGAG	3 cut(s)	178, 347, 692
BseXI	GCAGC	2 cut(s)	350, 1256
BshFI	GGCC	4 cut(s)	663, 837, 909, 1187
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	2 cut(s)	251, 875
BsiSI	CCGG	2 cut(s)	449, 512
BslFI	GGGAC	2 cut(s)	361, 530
BsmAI	GTCTC	1 cut(s)	759
BsmFI	GGGAC	2 cut(s)	361, 530
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	4 cut(s)	663, 837, 909, 1187
BsoBI	CYCGRG	2 cut(s)	251, 875
Bsp119I	TTCGAA	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	8 cut(s)	26, 179, 295, 748, 1048, 1075, 1231, 1318
BspACI	CCGC	2 cut(s)	492, 1171
BspANI	GGCC	4 cut(s)	663, 837, 909, 1187
BspCNI	CTCAG	3 cut(s)	44, 717, 1065
BspLI	GGNNCC	4 cut(s)	187, 297, 360, 1003
BspPI	GGATC	3 cut(s)	21, 290, 303
BspT104I	TTCGAA	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	620
BssECI	CCNNGG	4 cut(s)	291, 447, 512, 1032
BssMI	GATC	8 cut(s)	26, 179, 295, 748, 1048, 1075, 1231, 1318
BssNI	GRCGYC	1 cut(s)	509
BssSI	CACGAG	1 cut(s)	950
BssT1I	CCWWGG	2 cut(s)	291, 1032
Bst2BI	CACGAG	1 cut(s)	950
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	3 cut(s)	369, 730, 761
Bst6I	CTCTTC	2 cut(s)	774, 855
BstACI	GRCGYC	1 cut(s)	509
BstBAI	YACGTR	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	31, 704, 1052
BstHHI	GCGC	1 cut(s)	966
BstKTI	GATC	8 cut(s)	29, 182, 298, 751, 1051, 1078, 1234, 1321
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	8 cut(s)	26, 179, 295, 748, 1048, 1075, 1231, 1318
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 344, 498, 897, 906
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	3 cut(s)	447, 511, 601
BstSNI	TACGTA	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	350, 1256
BstV2I	GAAGAC	2 cut(s)	105, 273
BstX2I	RGATCY	3 cut(s)	26, 295, 1231
BstYI	RGATCY	3 cut(s)	26, 295, 1231
Bsu36I	CCTNAGG	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	1303
BsuRI	GGCC	4 cut(s)	663, 837, 909, 1187
BtgZI	GCGATG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	1106
BtsIMutI	CAGTG	3 cut(s)	648, 766, 1060
Cac8I	GCNNGC	1 cut(s)	528
CfoI	GCGC	1 cut(s)	966
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	6 cut(s)	163, 204, 444, 682, 880, 1256
CviAII	CATG	7 cut(s)	132, 342, 637, 685, 917, 1304, 1383
CviQI	GTAC	6 cut(s)	163, 204, 444, 682, 880, 1256
DdeI	CTNAG	3 cut(s)	31, 704, 1052
DpnI	GATC	8 cut(s)	28, 181, 297, 750, 1050, 1077, 1233, 1320
DpnII	GATC	8 cut(s)	26, 179, 295, 748, 1048, 1075, 1231, 1318
DraI	TTTAAA	2 cut(s)	739, 1141
EaeI	YGGCCR	2 cut(s)	835, 1185
Eam1104I	CTCTTC	2 cut(s)	774, 855
EarI	CTCTTC	2 cut(s)	774, 855
Eco105I	TACGTA	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	291, 1032
Eco147I	AGGCCT	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	31
Eco88I	CYCGRG	2 cut(s)	251, 875
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	2 cut(s)	291, 1032
ErhI	CCWWGG	2 cut(s)	291, 1032
FaeI	CATG	7 cut(s)	135, 345, 640, 688, 920, 1307, 1386
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 395, 427
FaqI	GGGAC	2 cut(s)	361, 530
FatI	CATG	7 cut(s)	131, 341, 636, 684, 916, 1303, 1382
Fnu4HI	GCNGC	2 cut(s)	339, 1245
Fsp4HI	GCNGC	2 cut(s)	339, 1245
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	965
GluI	GCNGC	2 cut(s)	339, 1245
GsuI	CTGGAG	2 cut(s)	624, 1220
HaeIII	GGCC	4 cut(s)	663, 837, 909, 1187
HapII	CCGG	2 cut(s)	449, 512
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	1 cut(s)	966
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	7 cut(s)	135, 345, 640, 688, 920, 1307, 1386
Hin6I	GCGC	1 cut(s)	964
HinP1I	GCGC	1 cut(s)	964
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	5 cut(s)	57, 217, 323, 557, 716
HpaII	CCGG	2 cut(s)	449, 512
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	1 cut(s)	1084
Hpy188I	TCNGA	4 cut(s)	222, 1231, 1290, 1358
Hpy188III	TCNNGA	6 cut(s)	21, 572, 677, 713, 752, 1237
Hpy8I	GTNNAC	1 cut(s)	1084
HpyAV	CCTTC	2 cut(s)	569, 633
HpyCH4III	ACNGT	3 cut(s)	369, 730, 761
HpyCH4IV	ACGT	2 cut(s)	416, 1105
HpyCH4V	TGCA	4 cut(s)	473, 613, 1040, 1151
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 344, 498, 897, 906
HpyF3I	CTNAG	3 cut(s)	31, 704, 1052
HpySE526I	ACGT	2 cut(s)	416, 1105
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	7 cut(s)	135, 345, 640, 688, 920, 1307, 1386
HspAI	GCGC	1 cut(s)	964
Kzo9I	GATC	8 cut(s)	26, 179, 295, 748, 1048, 1075, 1231, 1318
LmnI	GCTCC	2 cut(s)	191, 625
Lsp1109I	GCAGC	2 cut(s)	350, 1256
LweI	GCATC	6 cut(s)	23, 482, 513, 795, 1049, 1354
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	416, 1105
MaeIII	GTNAC	3 cut(s)	152, 694, 1281
MalI	GATC	8 cut(s)	28, 181, 297, 750, 1050, 1077, 1233, 1320
MboI	GATC	8 cut(s)	26, 179, 295, 748, 1048, 1075, 1231, 1318
MflI	RGATCY	3 cut(s)	26, 295, 1231
MhlI	GDGCHC	1 cut(s)	622
MlsI	TGGCCA	1 cut(s)	1187
MluNI	TGGCCA	1 cut(s)	1187
MlyI	GAGTC	1 cut(s)	51
Mox20I	TGGCCA	1 cut(s)	1187
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	1187
MseI	TTAA	8 cut(s)	210, 584, 738, 786, 1092, 1110, 1140, 1209
MslI	CAYNNNNRTG	1 cut(s)	1337
Msp20I	TGGCCA	1 cut(s)	1187
MspI	CCGG	2 cut(s)	449, 512
MspR9I	CCNGG	3 cut(s)	449, 513, 603
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	5 cut(s)	147, 344, 498, 897, 906
NciI	CCSGG	2 cut(s)	449, 513
NdeII	GATC	8 cut(s)	26, 179, 295, 748, 1048, 1075, 1231, 1318
NlaIII	CATG	7 cut(s)	135, 345, 640, 688, 920, 1307, 1386
NlaIV	GGNNCC	4 cut(s)	187, 297, 360, 1003
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	875
PceI	AGGCCT	1 cut(s)	909
PciI	ACATGT	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	217, 323, 557, 716
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	2 cut(s)	340, 1246
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	417
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	4 cut(s)	187, 297, 360, 1003
PspPI	GGNCC	1 cut(s)	358
PspPPI	RGGWCCY	1 cut(s)	358
PspXI	VCTCGAGB	1 cut(s)	875
PsuI	RGATCY	3 cut(s)	26, 295, 1231
RsaI	GTAC	6 cut(s)	164, 205, 445, 683, 881, 1257
RsaNI	GTAC	6 cut(s)	163, 204, 444, 682, 880, 1256
RseI	CAYNNNNRTG	1 cut(s)	1337
SaqAI	TTAA	8 cut(s)	210, 584, 738, 786, 1092, 1110, 1140, 1209
SatI	GCNGC	2 cut(s)	339, 1245
Sau3AI	GATC	8 cut(s)	26, 179, 295, 748, 1048, 1075, 1231, 1318
Sau96I	GGNCC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	881
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	3 cut(s)	449, 513, 603
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	6 cut(s)	23, 482, 513, 795, 1049, 1354
Sfr274I	CTCGAG	1 cut(s)	875
SfuI	TTCGAA	1 cut(s)	481
SinI	GGWCC	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	875
SmiMI	CAYNNNNRTG	1 cut(s)	1337
SmlI	CTYRAG	2 cut(s)	875, 911
SmoI	CTYRAG	2 cut(s)	875, 911
SnaBI	TACGTA	1 cut(s)	417
SseBI	AGGCCT	1 cut(s)	909
SsiI	CCGC	2 cut(s)	492, 1171
SspMI	CTAG	1 cut(s)	489
StuI	AGGCCT	1 cut(s)	909
StyD4I	CCNGG	3 cut(s)	447, 511, 601
StyI	CCWWGG	2 cut(s)	291, 1032
TaaI	ACNGT	3 cut(s)	369, 730, 761
TaiI	ACGT	2 cut(s)	419, 1108
TaqI	TCGA	7 cut(s)	351, 481, 571, 645, 719, 747, 876
TatI	WGTACW	5 cut(s)	162, 203, 681, 879, 1255
TfiI	GAWTC	4 cut(s)	217, 323, 557, 716
Tru1I	TTAA	8 cut(s)	210, 584, 738, 786, 1092, 1110, 1140, 1209
Tru9I	TTAA	8 cut(s)	210, 584, 738, 786, 1092, 1110, 1140, 1209
TscAI	CASTG	3 cut(s)	655, 766, 1060
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	2 cut(s)	338, 1244
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	5 cut(s)	435, 625, 660, 933, 1292
TspRI	CASTG	3 cut(s)	655, 766, 1060
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	4 cut(s)	629, 971, 1136, 1165
XceI	RCATGY	1 cut(s)	688
XhoI	CTCGAG	1 cut(s)	875
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.