Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010698.1

Orthogroup ID

OG0005926

Physical Location & Seq

Genomic Coordinates Forward (+)

8931 .. 10988

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010698.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgttttcttgggcatcttcaagaagatcttcaggggttgttttgggtgttcaacgactcggctctcgcacattgttcagtaaatcacaaccttcatcatcgccatcttcgtcttcttcgatcagctcatcatgtggtggcagttttggctgtaataatgagtacaatcacaagagtagatcaggctcctccaataagggtagtaaatttgatttgattcagaggtcagtttcttcaggggttctaattctcgggtcaagcataggctattcttattggtcttcttctaccttggatccaaacgcctctgtttgttttgctgattccaaagaggaggcagcatgggcaatcgagcaggaccctgcagaacaattcaagtccctcttttcaattcgaacccctagcggagagtgctttatgactccgggggacttgatgcgagctgttgttcctgtgtttcctccctatgattcaaatcgggttcgagaaggctctttaagaggggaaaatgttcctggagaattgcaatgtgctccttctaaattcttcatgcttttcgacactgatggtgatggcctcatttcatttcaagagtacatgtttttcgtcactctcctcagcattcctgaatcgagttttactgtggcttttaaaatgttcgatcttgacaacagtggagacattgataaggaagagtttaacagagttatggcattgatgcgaaatcacaacaataaaatcaaggacggccacagggtcaaagttggtgtagaagagggaggaatactcgagtacttcttcggcaaagacggcaaaaaaggccttaagcatgaaagatttgttcagtttttcagggatttacacgaggaaatgttgcgcttggagtttgctcattatgactacaaatcaaaaggaaccataacagctaaagattttgccttgtccttggttgcatctgctgatctcagtgacttatacaagttgcttgatcgtgttgacgatattaacaacgccccacgtcttaacaacatacgaattacatacaaggaatttaaagattttgcagagctacgcaagaatttgcagtctttctctttggccattttcagctacggcgaggttaatggggtatgtggcatcaatgttacagacaatgtgatggacataatcttccatgtattcgatgcaaatggtgatggtgacctaagtgcgaacgagtttgtcaaagttttacagaaccgtggaggtgaacccgtagagtcaggcctcaggggattcctaacttgcttcttaaactgtgcaactaaaagctgctcctacgctcagacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

443

Amino Acids

49.15

Weight (kDa)

5.65

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005926)

Species	Orthologous Gene IDs
malus_domestica	MD02G1018100.v1.1 MD15G1162000.v1.1
prunus_persica	Prupe.7G257300_v2.0.a1
pyrus_communis	pycom15g14560
rosa_chinensis	RchiOBHm_Chr2g0087011 RchiOBHm_Chr7g0219711
rosa_laevigata	RLG00000002277 RLG00000015822
rosa_multiflora	Rmu_sc0000902.1_g000013 Rmu_sc0000902.1_g000014 Rmu_sc0010698.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153960 Rroxscaffold_3G00239910 Rroxscaffold_3G00239920 Rroxscaffold_3G00239930
rosa_rugosa	Rorug01G0471500 Rorug07G0186800
rosa_samantha	Rh2AG024300 Rh2BG024800 Rh2CG024900 Rh2DG024800 Rh7AG330900 Rh7BG320600 Rh7CG348200 Rh7DG326300
rosa_wichuraiana	Rw2G001910 Rw2G001960 Rw7G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	2 cut(s)	290, 303
AcoI	YGGCCR	2 cut(s)	748, 1098
AcsI	RAATTY	4 cut(s)	206, 542, 1049, 1078
AcuI	CTGAAG	2 cut(s)	15, 219
AfaI	GTAC	3 cut(s)	164, 596, 794
AflII	CTTAAG	1 cut(s)	824
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	6 cut(s)	21, 53, 376, 390, 474, 590
AjiI	CACGTC	1 cut(s)	1019
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	6 cut(s)	126, 443, 926, 1069, 1110, 1311
AluI	AGCT	6 cut(s)	126, 443, 926, 1069, 1110, 1311
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	2 cut(s)	290, 303
Ama87I	CYCGRG	2 cut(s)	251, 788
AoxI	GGCC	5 cut(s)	574, 748, 820, 1098, 1264
ApeKI	GCWGC	2 cut(s)	338, 1311
ApoI	RAATTY	4 cut(s)	206, 542, 1049, 1078
Asp700I	GAANNNNTTC	2 cut(s)	28, 510
AspLEI	GCGC	1 cut(s)	879
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	4 cut(s)	581, 1205, 1211, 1259
AsuII	TTCGAA	1 cut(s)	394
AvaI	CYCGRG	2 cut(s)	251, 788
AvaII	GGWCC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	1268
BalI	TGGCCA	1 cut(s)	1100
BamHI	GGATCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	863
BbsI	GAAGAC	2 cut(s)	105, 273
Bbv12I	GWGCWC	1 cut(s)	535
BbvCI	CCTCAGC	1 cut(s)	617
BbvI	GCAGC	2 cut(s)	350, 1298
BccI	CCATC	5 cut(s)	112, 560, 566, 1153, 1190
BceAI	ACGGC	3 cut(s)	763, 826, 1129
BciT130I	CCWGG	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	824
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	2 cut(s)	339, 1312
BlsI	GCNGC	2 cut(s)	340, 1313
BmcAI	AGTACT	1 cut(s)	794
Bme1390I	CCNGG	2 cut(s)	426, 516
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	2 cut(s)	251, 788
BmgBI	CACGTC	1 cut(s)	1019
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	4 cut(s)	187, 297, 360, 916
BmrFI	CCNGG	2 cut(s)	426, 516
BmsI	GCATC	6 cut(s)	23, 426, 708, 962, 1146, 1174
BpiI	GAAGAC	2 cut(s)	105, 273
BplI	GAGNNNNNCTC	2 cut(s)	771, 803
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	617
Bpu14I	TTCGAA	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	4 cut(s)	291, 425, 945, 1240
Bse21I	CCTNAGG	1 cut(s)	1268
Bse3DI	GCAATG	1 cut(s)	533
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	4 cut(s)	291, 425, 945, 1240
BseJI	GATNNNNATC	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	3 cut(s)	631, 979, 1282
BseRI	GAGGAG	3 cut(s)	178, 347, 605
BseXI	GCAGC	2 cut(s)	350, 1298
BshFI	GGCC	5 cut(s)	576, 750, 822, 1100, 1266
BsiHKAI	GWGCWC	1 cut(s)	535
BsiHKCI	CYCGRG	2 cut(s)	251, 788
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	2 cut(s)	364, 443
BsmAI	GTCTC	1 cut(s)	672
BsmFI	GGGAC	2 cut(s)	364, 443
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	5 cut(s)	576, 750, 822, 1100, 1266
BsoBI	CYCGRG	2 cut(s)	251, 788
Bsp119I	TTCGAA	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	7 cut(s)	26, 120, 179, 295, 661, 961, 988
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	5 cut(s)	576, 750, 822, 1100, 1266
BspCNI	CTCAG	3 cut(s)	630, 978, 1281
BspLI	GGNNCC	4 cut(s)	187, 297, 360, 916
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	2 cut(s)	290, 303
BspT104I	TTCGAA	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	824
BsrDI	GCAATG	1 cut(s)	533
BssECI	CCNNGG	4 cut(s)	291, 425, 945, 1240
BssMI	GATC	7 cut(s)	26, 120, 179, 295, 661, 961, 988
BssSI	CACGAG	1 cut(s)	863
BssT1I	CCWWGG	2 cut(s)	291, 945
Bst2BI	CACGAG	1 cut(s)	863
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	4 cut(s)	643, 674, 1241, 1298
Bst6I	CTCTTC	2 cut(s)	687, 768
BstAFI	CTTAAG	1 cut(s)	824
BstBI	TTCGAA	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	5 cut(s)	617, 965, 1205, 1268, 1323
BstDSI	CCRYGG	1 cut(s)	1240
BstEII	GGTNACC	1 cut(s)	1199
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	7 cut(s)	29, 123, 182, 298, 664, 964, 991
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	7 cut(s)	26, 120, 179, 295, 661, 961, 988
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 344, 411, 810, 819
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	601
BstPI	GGTNACC	1 cut(s)	1199
BstSCI	CCNGG	2 cut(s)	424, 514
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	350, 1298
BstV2I	GAAGAC	2 cut(s)	105, 273
BstX2I	RGATCY	2 cut(s)	26, 295
BstYI	RGATCY	2 cut(s)	26, 295
Bsu36I	CCTNAGG	1 cut(s)	1268
BsuRI	GGCC	5 cut(s)	576, 750, 822, 1100, 1266
BtgI	CCRYGG	1 cut(s)	1240
BtgZI	GCGATG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	1019
BtsIMutI	CAGTG	3 cut(s)	561, 679, 973
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	1 cut(s)	879
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	163, 595, 793
CviAII	CATG	6 cut(s)	132, 342, 550, 598, 830, 1175
CviQI	GTAC	3 cut(s)	163, 595, 793
DdeI	CTNAG	5 cut(s)	617, 965, 1205, 1268, 1323
DpnI	GATC	7 cut(s)	28, 122, 181, 297, 663, 963, 990
DpnII	GATC	7 cut(s)	26, 120, 179, 295, 661, 961, 988
DraI	TTTAAA	2 cut(s)	652, 1054
EaeI	YGGCCR	2 cut(s)	748, 1098
Eam1104I	CTCTTC	2 cut(s)	687, 768
EarI	CTCTTC	2 cut(s)	687, 768
Eco130I	CCWWGG	2 cut(s)	291, 945
Eco147I	AGGCCT	2 cut(s)	822, 1266
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	15, 219
Eco81I	CCTNAGG	1 cut(s)	1268
Eco88I	CYCGRG	2 cut(s)	251, 788
Eco91I	GGTNACC	1 cut(s)	1199
EcoO109I	RGGNCCY	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	1199
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	2 cut(s)	291, 945
ErhI	CCWWGG	2 cut(s)	291, 945
FaeI	CATG	6 cut(s)	135, 345, 553, 601, 833, 1178
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 368, 400
FaqI	GGGAC	2 cut(s)	364, 443
FatI	CATG	6 cut(s)	131, 341, 549, 597, 829, 1174
Fnu4HI	GCNGC	2 cut(s)	339, 1312
Fsp4HI	GCNGC	2 cut(s)	339, 1312
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	2 cut(s)	339, 1312
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	5 cut(s)	576, 750, 822, 1100, 1266
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	1 cut(s)	879
Hin1II	CATG	6 cut(s)	135, 345, 553, 601, 833, 1178
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	8 cut(s)	57, 217, 323, 421, 470, 629, 1259, 1275
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	4 cut(s)	581, 1205, 1211, 1259
Hpy166II	GTNNAC	2 cut(s)	997, 1250
Hpy188I	TCNGA	2 cut(s)	222, 1326
Hpy188III	TCNNGA	5 cut(s)	21, 485, 590, 626, 665
Hpy8I	GTNNAC	2 cut(s)	997, 1250
HpyAV	CCTTC	3 cut(s)	102, 482, 546
HpyCH4III	ACNGT	4 cut(s)	643, 674, 1241, 1298
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	7 cut(s)	365, 526, 953, 1064, 1084, 1187, 1301
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 344, 411, 810, 819
HpyF3I	CTNAG	5 cut(s)	617, 965, 1205, 1268, 1323
HpySE526I	ACGT	1 cut(s)	1018
Hsp92II	CATG	6 cut(s)	135, 345, 553, 601, 833, 1178
HspAI	GCGC	1 cut(s)	877
Kzo9I	GATC	7 cut(s)	26, 120, 179, 295, 661, 961, 988
LmnI	GCTCC	3 cut(s)	191, 538, 1319
Lsp1109I	GCAGC	2 cut(s)	350, 1298
LweI	GCATC	6 cut(s)	23, 426, 708, 962, 1146, 1174
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	4 cut(s)	607, 968, 1144, 1199
MalI	GATC	7 cut(s)	28, 122, 181, 297, 663, 963, 990
MboI	GATC	7 cut(s)	26, 120, 179, 295, 661, 961, 988
MflI	RGATCY	2 cut(s)	26, 295
MhlI	GDGCHC	1 cut(s)	535
MlsI	TGGCCA	1 cut(s)	1100
MluCI	AATT	9 cut(s)	206, 246, 371, 390, 521, 542, 1035, 1049, 1078
MluNI	TGGCCA	1 cut(s)	1100
MlyI	GAGTC	3 cut(s)	51, 415, 1268
Mox20I	TGGCCA	1 cut(s)	1100
MroXI	GAANNNNTTC	2 cut(s)	28, 510
MscI	TGGCCA	1 cut(s)	1100
MseI	TTAA	9 cut(s)	497, 651, 699, 825, 1005, 1023, 1053, 1122, 1292
Msp20I	TGGCCA	1 cut(s)	1100
MspCI	CTTAAG	1 cut(s)	824
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	426, 516
Mva1269I	GAATGC	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	5 cut(s)	147, 344, 411, 810, 819
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	7 cut(s)	26, 120, 179, 295, 661, 961, 988
NlaIII	CATG	6 cut(s)	135, 345, 553, 601, 833, 1178
NlaIV	GGNNCC	4 cut(s)	187, 297, 360, 916
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	607, 968, 1199
NspI	RCATGY	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	788
PceI	AGGCCT	2 cut(s)	822, 1266
PciI	ACATGT	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	2 cut(s)	107, 116
PctI	GAATGC	1 cut(s)	621
PdmI	GAANNNNTTC	2 cut(s)	28, 510
PfeI	GAWTC	5 cut(s)	217, 323, 470, 629, 1275
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	2 cut(s)	340, 1313
PleI	GAGTC	3 cut(s)	51, 415, 1267
PpsI	GAGTC	3 cut(s)	51, 415, 1267
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	514
PspEI	GGTNACC	1 cut(s)	1199
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	4 cut(s)	187, 297, 360, 916
PspPI	GGNCC	1 cut(s)	358
PspPPI	RGGWCCY	1 cut(s)	358
PspXI	VCTCGAGB	1 cut(s)	788
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	26, 295
RsaI	GTAC	3 cut(s)	164, 596, 794
RsaNI	GTAC	3 cut(s)	163, 595, 793
SaqAI	TTAA	9 cut(s)	497, 651, 699, 825, 1005, 1023, 1053, 1122, 1292
SatI	GCNGC	2 cut(s)	339, 1312
Sau3AI	GATC	7 cut(s)	26, 120, 179, 295, 661, 961, 988
Sau96I	GGNCC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	794
SchI	GAGTC	3 cut(s)	51, 415, 1268
ScrFI	CCNGG	2 cut(s)	426, 516
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	6 cut(s)	23, 426, 708, 962, 1146, 1174
SfcI	CTRYAG	1 cut(s)	363
Sfr274I	CTCGAG	1 cut(s)	788
SfuI	TTCGAA	1 cut(s)	394
SinI	GGWCC	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	788, 824
SmoI	CTYRAG	2 cut(s)	788, 824
Sse9I	AATT	9 cut(s)	206, 246, 371, 390, 521, 542, 1035, 1049, 1078
SseBI	AGGCCT	2 cut(s)	822, 1266
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	1 cut(s)	402
StuI	AGGCCT	2 cut(s)	822, 1266
StyD4I	CCNGG	2 cut(s)	424, 514
StyI	CCWWGG	2 cut(s)	291, 945
TaaI	ACNGT	4 cut(s)	643, 674, 1241, 1298
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	9 cut(s)	119, 351, 394, 484, 558, 632, 660, 789, 1182
TasI	AATT	9 cut(s)	206, 246, 371, 390, 521, 542, 1035, 1049, 1078
TatI	WGTACW	3 cut(s)	162, 594, 792
TfiI	GAWTC	5 cut(s)	217, 323, 470, 629, 1275
Tru1I	TTAA	9 cut(s)	497, 651, 699, 825, 1005, 1023, 1053, 1122, 1292
Tru9I	TTAA	9 cut(s)	497, 651, 699, 825, 1005, 1023, 1053, 1122, 1292
TscAI	CASTG	3 cut(s)	568, 679, 973
TseFI	GTSAC	3 cut(s)	607, 968, 1199
TseI	GCWGC	2 cut(s)	338, 1311
Tsp45I	GTSAC	3 cut(s)	607, 968, 1199
TspDTI	ATGAA	4 cut(s)	84, 538, 573, 846
TspRI	CASTG	3 cut(s)	568, 679, 973
Vha464I	CTTAAG	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	4 cut(s)	206, 542, 1049, 1078
XceI	RCATGY	1 cut(s)	601
XhoI	CTCGAG	1 cut(s)	788
XmnI	GAANNNNTTC	2 cut(s)	28, 510
XspI	CTAG	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.