Rh2CG024900

Calcium uptake protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005926
Physical Location & Seq
Forward (+)
1907991 .. 1913807
5817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG024900.1

Sequence Viewer

Length: 1407 bp
ATGTTTTCTTGGGCATCTTCAAGAAGATCTTCAGGGGTTGTTTTGGGTGTTCAACGACTCGGCTCTCGCACATTGTTCAGTAAATCACAACCTTCATCATCGCCATCTTCGTCTTCTTCGATCAGCTCATCATGTGGTGGCAGTTTTGGCTGTAATAACGAGTACAATCACAAGAGTAGATCAGGCTCCTCCAATAAGGGTAGTAAATTTGATTTGATTCAGAGGTCAGTTTCTTCAGGGGTTCTAATTCTCGGGTCAAGCATAGGCTATTCTTATTGGTCTTCTTCTACCTTGGATCCAAACGCCTCTGTTTGTTTTGCTGATTCCAAAGAGGAGGCAGCATGGGCAATCGAGCAGGACCCTGCAGAACAATTCAAGTCCCTCTTTTCAAATACATTTAGGAGAAAAAAGTTCTTTACGTATGAAAAAAAGATAAGAGAGCGAAGTACCCCAGAAAAGATTTTCAATTACTTTGCATCAGTTCGAACCCCTAGCGGAGAGTGCTTTATGACTCCGGGGGACTTGATGCGAGCTGTTGTTCCTGTGTTTCCTCCCTATGATTCAAATCGGGTTCGAGAAGGCTCTTTAAGAGGGGAAAATGTTCCTGGAGAATTGCAATGTGCTCCTTCTAAATTCTTCATGCTTTTCGACACTGATGGTGATGGCCTCATTTCATTTCAAGAGTACATGTTTTTCGTCACTCTCCTCAGCATTCCTGAATCGAGTTTTACTGTGGCTTTTAAAATGTTCGATCTTGACAACAGTGGAGACATTGATAAGGAAGAGTTTAACAGAGTTATGGCATTGATGCGAAATCACAACAATAAAATCAAGGACGGCCACAGGGTCAAAGTTGGTGTAGAAGAGGGAGGAATACTCGAGTACTTCTTCGGCAAAGACGGCAAAAAAGGCCTTAAGCATGAAAGATTTGTTCAGTTTTTCAGGGATTTACACGAGGAAATGTTGCGCTTGGAGTTTGCTCATTATGACTATAAATCAAAAGGAACCATAACAGCTAAAGATTTTGCCTTGTCCTTGGTTGCATCTGCTGATCTCAGTGACTTATACAAGTTGCTTGATCGTGTTGACGATATTAACAACGCCCCACGTCTTAACAACATACAAATTACATACAAGGAATTTAAAGATTTTGCAGAGCTACGCAAGAATTTGCAGTCTTTCTCTTTGGCCATTTTCAGCTACGGCGAGGTTAATGGGGTTTTGACAAAATCAGATCTCCAGAGAGCAGCTTCCAAAGTACATTCTCACATACCAATCTATCTGTTCCTTCTGATTAGCTTCTTTCATGTGGATACTAACGATCAACTAATCGACACAGGTATGTGGCATCAATGTTACAGACAATGTGATGGACATAATCTTCCGTGTATTCGATGCAAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

468

Amino Acids

53.01

Weight (kDa)

8.42

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_5 PF13202 246 - 267 2.5e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 495
AclWI GGATC 2 cut(s) 290, 303
AcoI YGGCCR 2 cut(s) 838, 1188
AcsI RAATTY 4 cut(s) 206, 632, 1139, 1168
AcuI CTGAAG 2 cut(s) 15, 219
AfaI GTAC 5 cut(s) 164, 448, 686, 884, 1260
AflII CTTAAG 1 cut(s) 914
AflIII ACRYGT 1 cut(s) 687
AgsI TTSAA 7 cut(s) 21, 53, 376, 390, 466, 564, 680
AjiI CACGTC 1 cut(s) 1109
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 7 cut(s) 126, 533, 1016, 1159, 1200, 1250, 1299
AluI AGCT 7 cut(s) 126, 533, 1016, 1159, 1200, 1250, 1299
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 762
AlwI GGATC 2 cut(s) 290, 303
Ama87I CYCGRG 2 cut(s) 251, 878
AoxI GGCC 4 cut(s) 664, 838, 910, 1188
ApeKI GCWGC 2 cut(s) 338, 1247
ApoI RAATTY 4 cut(s) 206, 632, 1139, 1168
Asp700I GAANNNNTTC 2 cut(s) 28, 600
AspLEI GCGC 1 cut(s) 969
AspS9I GGNCC 1 cut(s) 358
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 671
AsuII TTCGAA 1 cut(s) 484
AvaI CYCGRG 2 cut(s) 251, 878
AvaII GGWCC 1 cut(s) 358
BalI TGGCCA 1 cut(s) 1190
BamHI GGATCC 1 cut(s) 295
BauI CACGAG 1 cut(s) 953
BbsI GAAGAC 2 cut(s) 105, 273
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 707
BbvI GCAGC 2 cut(s) 350, 1259
BccI CCATC 4 cut(s) 112, 650, 656, 1364
BceAI ACGGC 3 cut(s) 853, 916, 1219
BciT130I CCWGG 1 cut(s) 606
BciVI GTATCC 1 cut(s) 1306
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 914
BfuI GTATCC 1 cut(s) 1306
BglII AGATCT 2 cut(s) 26, 1234
BisI GCNGC 2 cut(s) 339, 1248
BlsI GCNGC 2 cut(s) 340, 1249
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 2 cut(s) 516, 606
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 2 cut(s) 251, 878
BmgBI CACGTC 1 cut(s) 1109
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 4 cut(s) 187, 297, 360, 1006
BmrFI CCNGG 2 cut(s) 516, 606
BmsI GCATC 7 cut(s) 23, 485, 516, 798, 1052, 1357, 1385
BpiI GAAGAC 2 cut(s) 105, 273
BplI GAGNNNNNCTC 2 cut(s) 861, 893
BpmI CTGGAG 2 cut(s) 627, 1223
Bpu10I CCTNAGC 1 cut(s) 707
Bpu14I TTCGAA 1 cut(s) 484
BpuMI CCSGG 1 cut(s) 516
BsaAI YACGTR 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 291, 515, 1035
Bse3DI GCAATG 1 cut(s) 623
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 291, 515, 1035
BseJI GATNNNNATC 1 cut(s) 564
BseMI GCAATG 1 cut(s) 623
BseMII CTCAG 2 cut(s) 721, 1069
BseRI GAGGAG 3 cut(s) 178, 347, 695
BseXI GCAGC 2 cut(s) 350, 1259
BshFI GGCC 4 cut(s) 666, 840, 912, 1190
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 2 cut(s) 251, 878
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 2 cut(s) 364, 533
BsmAI GTCTC 1 cut(s) 762
BsmFI GGGAC 2 cut(s) 364, 533
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 4 cut(s) 666, 840, 912, 1190
BsoBI CYCGRG 2 cut(s) 251, 878
Bsp119I TTCGAA 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 9 cut(s) 26, 120, 179, 295, 751, 1051, 1078, 1234, 1321
BspACI CCGC 1 cut(s) 495
BspANI GGCC 4 cut(s) 666, 840, 912, 1190
BspCNI CTCAG 2 cut(s) 720, 1068
BspLI GGNNCC 4 cut(s) 187, 297, 360, 1006
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 2 cut(s) 290, 303
BspT104I TTCGAA 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 914
BsrDI GCAATG 1 cut(s) 623
BssECI CCNNGG 3 cut(s) 291, 515, 1035
BssMI GATC 9 cut(s) 26, 120, 179, 295, 751, 1051, 1078, 1234, 1321
BssSI CACGAG 1 cut(s) 953
BssT1I CCWWGG 2 cut(s) 291, 1035
Bst2BI CACGAG 1 cut(s) 953
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 733, 764, 1404
Bst6I CTCTTC 2 cut(s) 777, 858
BstAFI CTTAAG 1 cut(s) 914
BstBAI YACGTR 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 707, 1055
BstHHI GCGC 1 cut(s) 969
BstKTI GATC 9 cut(s) 29, 123, 182, 298, 754, 1054, 1081, 1237, 1324
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 9 cut(s) 26, 120, 179, 295, 751, 1051, 1078, 1234, 1321
BstMWI GCNNNNNNNGC 5 cut(s) 147, 344, 501, 900, 909
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 2 cut(s) 514, 604
BstSFI CTRYAG 1 cut(s) 363
BstSNI TACGTA 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 350, 1259
BstV2I GAAGAC 2 cut(s) 105, 273
BstX2I RGATCY 3 cut(s) 26, 295, 1234
BstYI RGATCY 3 cut(s) 26, 295, 1234
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 4 cut(s) 666, 840, 912, 1190
BtgZI GCGATG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 1109
BtsIMutI CAGTG 3 cut(s) 651, 769, 1063
Cac8I GCNNGC 1 cut(s) 531
CfoI GCGC 1 cut(s) 969
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 5 cut(s) 163, 447, 685, 883, 1259
CviAII CATG 6 cut(s) 132, 342, 640, 688, 920, 1307
CviQI GTAC 5 cut(s) 163, 447, 685, 883, 1259
DdeI CTNAG 2 cut(s) 707, 1055
DpnI GATC 9 cut(s) 28, 122, 181, 297, 753, 1053, 1080, 1236, 1323
DpnII GATC 9 cut(s) 26, 120, 179, 295, 751, 1051, 1078, 1234, 1321
DraI TTTAAA 2 cut(s) 742, 1144
EaeI YGGCCR 2 cut(s) 838, 1188
Eam1104I CTCTTC 2 cut(s) 777, 858
EarI CTCTTC 2 cut(s) 777, 858
Eco105I TACGTA 1 cut(s) 420
Eco130I CCWWGG 2 cut(s) 291, 1035
Eco147I AGGCCT 1 cut(s) 912
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 15, 219
Eco88I CYCGRG 2 cut(s) 251, 878
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 2 cut(s) 291, 1035
ErhI CCWWGG 2 cut(s) 291, 1035
FaeI CATG 6 cut(s) 135, 345, 643, 691, 923, 1310
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 368, 400
FaqI GGGAC 2 cut(s) 364, 533
FatI CATG 6 cut(s) 131, 341, 639, 687, 919, 1306
Fnu4HI GCNGC 2 cut(s) 339, 1248
Fsp4HI GCNGC 2 cut(s) 339, 1248
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 968
GluI GCNGC 2 cut(s) 339, 1248
GsuI CTGGAG 2 cut(s) 627, 1223
HaeIII GGCC 4 cut(s) 666, 840, 912, 1190
HapII CCGG 1 cut(s) 515
HhaI GCGC 1 cut(s) 969
Hin1II CATG 6 cut(s) 135, 345, 643, 691, 923, 1310
Hin6I GCGC 1 cut(s) 967
HinP1I GCGC 1 cut(s) 967
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HinfI GANTC 6 cut(s) 57, 217, 323, 511, 560, 719
HpaII CCGG 1 cut(s) 515
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 1 cut(s) 1087
Hpy188I TCNGA 3 cut(s) 222, 1234, 1293
Hpy188III TCNNGA 6 cut(s) 21, 575, 680, 716, 755, 1240
Hpy8I GTNNAC 1 cut(s) 1087
HpyAV CCTTC 4 cut(s) 102, 572, 636, 1298
HpyCH4III ACNGT 3 cut(s) 733, 764, 1404
HpyCH4IV ACGT 2 cut(s) 419, 1108
HpyCH4V TGCA 7 cut(s) 365, 476, 616, 1043, 1154, 1174, 1398
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 344, 501, 900, 909
HpyF3I CTNAG 2 cut(s) 707, 1055
HpySE526I ACGT 2 cut(s) 419, 1108
Hsp92II CATG 6 cut(s) 135, 345, 643, 691, 923, 1310
HspAI GCGC 1 cut(s) 967
Kzo9I GATC 9 cut(s) 26, 120, 179, 295, 751, 1051, 1078, 1234, 1321
LmnI GCTCC 2 cut(s) 191, 628
Lsp1109I GCAGC 2 cut(s) 350, 1259
LweI GCATC 7 cut(s) 23, 485, 516, 798, 1052, 1357, 1385
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 419, 1108
MaeIII GTNAC 3 cut(s) 697, 1058, 1355
MalI GATC 9 cut(s) 28, 122, 181, 297, 753, 1053, 1080, 1236, 1323
MboI GATC 9 cut(s) 26, 120, 179, 295, 751, 1051, 1078, 1234, 1321
MflI RGATCY 3 cut(s) 26, 295, 1234
MhlI GDGCHC 1 cut(s) 625
MlsI TGGCCA 1 cut(s) 1190
MluCI AATT 9 cut(s) 206, 246, 371, 466, 611, 632, 1125, 1139, 1168
MluNI TGGCCA 1 cut(s) 1190
MlyI GAGTC 2 cut(s) 51, 505
Mox20I TGGCCA 1 cut(s) 1190
MroXI GAANNNNTTC 2 cut(s) 28, 600
MscI TGGCCA 1 cut(s) 1190
MseI TTAA 8 cut(s) 587, 741, 789, 915, 1095, 1113, 1143, 1212
MslI CAYNNNNRTG 1 cut(s) 1340
Msp20I TGGCCA 1 cut(s) 1190
MspCI CTTAAG 1 cut(s) 914
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 2 cut(s) 516, 606
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 5 cut(s) 147, 344, 501, 900, 909
NciI CCSGG 1 cut(s) 516
NdeII GATC 9 cut(s) 26, 120, 179, 295, 751, 1051, 1078, 1234, 1321
NlaIII CATG 6 cut(s) 135, 345, 643, 691, 923, 1310
NlaIV GGNNCC 4 cut(s) 187, 297, 360, 1006
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 697, 1058
NspI RCATGY 1 cut(s) 691
NspV TTCGAA 1 cut(s) 484
PaeR7I CTCGAG 1 cut(s) 878
PceI AGGCCT 1 cut(s) 912
PciI ACATGT 1 cut(s) 687
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 116
PctI GAATGC 1 cut(s) 711
PdmI GAANNNNTTC 2 cut(s) 28, 600
PfeI GAWTC 4 cut(s) 217, 323, 560, 719
PfoI TCCNGGA 1 cut(s) 604
PkrI GCNGC 2 cut(s) 340, 1249
PleI GAGTC 2 cut(s) 51, 505
PpsI GAGTC 2 cut(s) 51, 505
Ppu21I YACGTR 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 358
PscI ACATGT 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 4 cut(s) 187, 297, 360, 1006
PspPI GGNCC 1 cut(s) 358
PspPPI RGGWCCY 1 cut(s) 358
PspXI VCTCGAGB 1 cut(s) 878
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 3 cut(s) 26, 295, 1234
RsaI GTAC 5 cut(s) 164, 448, 686, 884, 1260
RsaNI GTAC 5 cut(s) 163, 447, 685, 883, 1259
RseI CAYNNNNRTG 1 cut(s) 1340
SaqAI TTAA 8 cut(s) 587, 741, 789, 915, 1095, 1113, 1143, 1212
SatI GCNGC 2 cut(s) 339, 1248
Sau3AI GATC 9 cut(s) 26, 120, 179, 295, 751, 1051, 1078, 1234, 1321
Sau96I GGNCC 1 cut(s) 358
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 2 cut(s) 51, 505
ScrFI CCNGG 2 cut(s) 516, 606
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 7 cut(s) 23, 485, 516, 798, 1052, 1357, 1385
SfcI CTRYAG 1 cut(s) 363
Sfr274I CTCGAG 1 cut(s) 878
SfuI TTCGAA 1 cut(s) 484
SinI GGWCC 1 cut(s) 358
SlaI CTCGAG 1 cut(s) 878
SmiMI CAYNNNNRTG 1 cut(s) 1340
SmlI CTYRAG 2 cut(s) 878, 914
SmoI CTYRAG 2 cut(s) 878, 914
SnaBI TACGTA 1 cut(s) 420
Sse9I AATT 9 cut(s) 206, 246, 371, 466, 611, 632, 1125, 1139, 1168
SseBI AGGCCT 1 cut(s) 912
SsiI CCGC 1 cut(s) 495
SspMI CTAG 1 cut(s) 492
StuI AGGCCT 1 cut(s) 912
StyD4I CCNGG 2 cut(s) 514, 604
StyI CCWWGG 2 cut(s) 291, 1035
TaaI ACNGT 3 cut(s) 733, 764, 1404
TaiI ACGT 2 cut(s) 422, 1111
TasI AATT 9 cut(s) 206, 246, 371, 466, 611, 632, 1125, 1139, 1168
TatI WGTACW 4 cut(s) 162, 684, 882, 1258
TfiI GAWTC 4 cut(s) 217, 323, 560, 719
Tru1I TTAA 8 cut(s) 587, 741, 789, 915, 1095, 1113, 1143, 1212
Tru9I TTAA 8 cut(s) 587, 741, 789, 915, 1095, 1113, 1143, 1212
TscAI CASTG 3 cut(s) 658, 769, 1063
TseFI GTSAC 2 cut(s) 697, 1058
TseI GCWGC 2 cut(s) 338, 1247
Tsp45I GTSAC 2 cut(s) 697, 1058
TspDTI ATGAA 6 cut(s) 84, 438, 628, 663, 936, 1295
TspGWI ACGGA 1 cut(s) 1374
TspRI CASTG 3 cut(s) 658, 769, 1063
Vha464I CTTAAG 1 cut(s) 914
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 4 cut(s) 206, 632, 1139, 1168
XceI RCATGY 1 cut(s) 691
XhoI CTCGAG 1 cut(s) 878
XmnI GAANNNNTTC 2 cut(s) 28, 600
XspI CTAG 1 cut(s) 492
ZrmI AGTACT 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.